BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28690.1
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933335 jgi|Araly1|933335|scaffold_401323.1 1129 0.0
> Ahg933335 jgi|Araly1|933335|scaffold_401323.1
Length=737
Score = 1129 bits (611), Expect = 0.0
Identities = 697/739 (94%), Gaps = 3/739 (0%)
Strand=Plus/Plus
Query 132 gaagagaagagaCCAAACAAATGGAAGAGTTGGGTTCTATTTGGTTTTACCAAGAGAGTA 191
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAAGAAGAGACAAAACAAATGGAAGAGTTGGGTTCTATTTGGTTTTACCAAGAGAGTA 60
Query 192 TGGATGAATTAAGACAAAAGCTTCAATATAGTTCCTTTGAACTCGAAGCCGTGAAAGCAA 251
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TGGATGAATTAAGACAAAAGCTTCAATATAGTTCCTTTGAACTCGAAGCAGTGAAAGCAA 120
Query 252 AAGCTAATGAAGAAACAAAACTTCACCAAGAAGAAGTGAAGAATCTTCTTCATCTTCTCA 311
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTAATGAAGAAACAAAACTTCATCAAGAAGAAGTGAAGAATCTTCTTCATCTTCTCA 180
Query 312 AACTTGCTCGTCAAGAAAGAGACGAAGCTAAAGATCAATTACAAAAACTTCTCACAATCA 371
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AACTTGCTCGTCAAGAAAGAGACGAAGCTAAAGATCAACTACAAAAACTTCTCACAATCA 240
Query 372 AAACAAATTCAAGCATAACCGAGTCAAACTCTCACGGTTCTTCACCGGTTGACTCGTTCT 431
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 241 AAACAAATTCAGGCATAACCGAGTCAAACTCACACGGTTCTTCACCGGTTGACTCATTCT 300
Query 432 TCGAACCGGTCTCATCCTCGGAATTCTCCAATTTCAACATGGTACCTGAACCGATTAACC 491
| ||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct 301 TTGAACCGGTCTCATCCTCTGAATTCTCCAATTTCAACATAATACCAGAACCGGTTAACC 360
Query 492 AAGTCAAATTCAAGAACCGACAACAACTCGTTAACCGGAACTTGAAGAAGATTGATCCTG 551
|| |||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 361 AAATCAAGTTCAAGAACCGACAACAACCCGTTAACCGGATCTTGAAAAAGATTGATCCTG 420
Query 552 TGGATGCTCTAATGGATGAGATCATAAAAGGTAAAGCTTTACCGGAGAAAGGGAAGCTTC 611
|||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 421 TGGATGCTCTAATGGATGAGATTATAAAAGGCAAATCTTTACCGGAGAAAGGGAAGCTTC 480
Query 612 TTCAAACTGTGATGGAATCTGGACCGTTGCTTCAAACACTTCTTGTTGCTGGTCCACTTC 671
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TTCAAACAGTGATGAAATCTGGACCGTTGCTTCAAACACTTCTTGTTGCTGGTCCTCTTC 540
Query 672 CACGGTGGCGTAATCCTCCCCCGCTTCAACAGAGCTTTAGAGTCCCTCCGATCTCTAACT 731
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 541 CACGGTGGCGTAATCCTCCGCCGCTTCAACAGAGCTTAAGAGTTCCTCCGATCTCAAACT 600
Query 732 CTTACGGTTGTTTACCGGCGACGACAACGACTTCAATGCTGAATTTTAGAGGTTGCTCTG 791
||||||||||||| ||| | ||||| ||| | | || ||||||||||||||||||||||
Sbjct 601 CTTACGGTTGTTTGCCGACAACGACGACG--T-CGATACTGAATTTTAGAGGTTGCTCTG 657
Query 792 TTCCTAGAATTGCTACCGGAATTGAAGTTGCAACTAAACGACAACGatttcattagtgtt 851
||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 658 TTCCTGGAATTGCCACCGGAATTGAAGTTGCTACTAAACGACAACGATTTCATTAGTGCT 717
Query 852 tttgttgttacaattattt 870
|||||||||||||||||||
Sbjct 718 TTTGTTGTTACAATTATTT 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40867767024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5