BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28710.1

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933337 jgi|Araly1|933337|scaffold_401325.1                        795    0.0  


> Ahg933337 jgi|Araly1|933337|scaffold_401325.1
Length=511

 Score =  795 bits (430),  Expect = 0.0
 Identities = 469/488 (96%), Gaps = 1/488 (0%)
 Strand=Plus/Plus

Query  58   ATCAGTCAAATGGAAAGGGGAAGATCAGATATGGAGATGATAAACAACATGGCAAATTGC  117
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  12   ATCAGTCAAATGGAAAGGGGAAGATCAGAGATGGAGATGATAAACAACATGGCAAATTGC  71

Query  118  TTGATTCTTCTATCAAAGGCCCATCAAAACGACACCAAAAGCCGTGTTTTCGCGTGCAAG  177
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  72   TTGATTCTTCTATCAAAGGCTCATCAAAACGACACCAAAAGCCGTGTTTTCGCGTGCAAG  131

Query  178  ACATGCAACAAAGAGTTCCCGTCGTTCCAAGCCTTGGGAGGTCACCGAGCCAGCCACCGG  237
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  132  ACATGCAACAAGGAGTTCCCGTCGTTTCAAGCCTTGGGAGGTCACCGAGCCAGCCACCGG  191

Query  238  CGATCCGCAGCGCTTGAAGGCCACGCACCTCCTTCTCCTAAGAGAGTCAAACCGGTGAAA  297
            ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  192  CGATCGGCAGCCCTTGAAGGCCACGCGCCTCCTTCTCCTAAGAGAGTCAAACCGGTGAAA  251

Query  298  CACGAGTGTCCCATATGTGGTGCTGAGTTCGCGGTAGGGCAGGCCTTAGGTGGTCACATG  357
            ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  252  CACGAGTGTCCCATATGCGGTGCTGAGTTCGCGGTAGGGCAAGCCTTGGGTGGTCACATG  311

Query  358  AGGAAGCATAGAGGTGGATCAGGAGGAGGAGGTGGCCGGAGTTTGGCGCCGGCTACAGCG  417
            |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct  312  AGGAAGCATAGAGGTGGATCAGGAGGAGCAGTTGGCCGGAGTTTGGCACCGGCTACAGCG  371

Query  418  CCGGTGACGATGAAGAAATCAGGCGGTGGTAATGGAAAAAGAGTTTTGTGTTTGGACTTG  477
            |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct  372  CCGGTGACGATGAAGAAATCTGGCGGTGGTAATGGAAAGAGGGTTTTGTGTTTGGACTTG  431

Query  478  AACTTGACGCCTTTAGAGAACGAAGATTTGAAGTTGGAGCTTGGGAGGtttattttctga  537
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  432  AACTTGACGCCTTTAGAGAATGAAGATTTGAAGTTGGAGCTTGGGAGGTTGATTTTCTGA  491

Query  538  tttttgtt  545
            |||| |||
Sbjct  492  TTTT-GTT  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24856141884


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5