BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28720.1
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933338 jgi|Araly1|933338|scaffold_401326.1 765 0.0
Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1 359 2e-98
Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1 315 4e-85
Ahg470811 jgi|Araly1|470811|fgenesh2_kg.1__765__AT1G07790.1 257 6e-68
> Ahg933338 jgi|Araly1|933338|scaffold_401326.1
Length=506
Score = 765 bits (414), Expect = 0.0
Identities = 468/492 (95%), Gaps = 12/492 (2%)
Strand=Plus/Plus
Query 45 TTTCCCGAG-AAAACTaaaaaaaTGGCACCaaaagccggaaagaaaccagcagagaa-aa 102
||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1 TTTCCCGAGAAAAACT-CAAAAATGGCACCAAAAGCTGGAAAGAAACCAGCAGAGAAGAA 59
Query 103 a---gcc-c-gcagagaaagctccagc---agaagaagagaaagtagccgaaaaagcacc 154
| ||| | ||||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 60 ACCCGCCGCGGCAGAGAAAGCTCCAGCAGTAGAAGAAGAGAAAGTAGCAGAGAAAGCACC 119
Query 155 agcagagaagaaaccaaaagccggaaaaaaaCTACCAAAAGAAGCAGTCACCGGAGGAGT 214
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 AGCAGAGAAGAAACCAAAAGCCGGAAAAAAGCTACCAAAAGAAGCAGTCACCGGAGGAGT 179
Query 215 CGAGAAGAAGAAGAAACGAGTCAAGAAAAGCACAGAGACATACAAGATCTACATCTTCAA 274
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 CGACAAGAAGAAGAAACGAGTCAAGAAAAGCACAGAGACATACAAGATCTATATCTTCAA 239
Query 275 GGTGTTGAAACAAGTTCATCCAGATATTGGAATCTCAAGTAAAGCTATGGGGATTATGAA 334
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GGTGTTGAAACAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGGATTATGAA 299
Query 335 CAGTTTTATCAATGATATATTCGAGAAACTTGCGCAAGAAGCTTCAAAATTAGCTAGGTA 394
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CAGTTTTATCAACGATATATTCGAGAAACTTGCGCAAGAAGCTTCGAAATTAGCTAGGTA 359
Query 395 TAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGACTAGTGTTACC 454
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 TAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGACTTGTGTTACC 419
Query 455 TGGTGAACTTGCTAAGCATGCTGTTTCTGAAGGAACTAAGGCTGTTACTAAGTTTACTAG 514
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TGGTGAACTTGCTAAGCATGCTGTTTCTGAAGGAACTAAAGCTGTTACTAAGTTTACTAG 479
Query 515 CTCTTAGG-TTT 525
|||||||| |||
Sbjct 480 CTCTTAGGGTTT 491
> Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1
Length=565
Score = 359 bits (194), Expect = 2e-98
Identities = 360/437 (82%), Gaps = 23/437 (5%)
Strand=Plus/Plus
Query 93 gcagagaaaaagcccgcagagaaag-ctcca--gcagaagaaga-gaaagtagccgaaaa 148
|||||||| ||||| |||||| ||| ||| | || |||| | ||| |||||| ||
Sbjct 79 GCAGAGAAGAAGCCGGCAGAG-AAGAAACCAGTGGAGGAGAA-ATCAAA--AGCCGAGAA 134
Query 149 agcaccagcagagaagaaaccaaaagccggaaaaaaaCTACCAAAAGAAGCAGTCACCGG 208
||| || || |||||||||||||||||||| || ||||| || |||||||| | | ||||
Sbjct 135 AGCTCCGGCGGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGG 194
Query 209 AGGAGTCGAGAAGAAGAAGAAACG-AGTCAAGAAAAGCACAGAGACATACAAGATCTACA 267
|||| | ||||||||||| | | || ||||| || |||||||||||||||||||
Sbjct 195 CGGAGACAAGAAGAAGAAG--ATGAAG--AAGAAGAGTGTTGAGACATACAAGATCTACA 250
Query 268 TCTTCAAGGTGT-TGAAACAAGTTCATCCAGATATTGGAATCTCAAGTAAAGCTATGGGG 326
|||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 251 TCTTCAAGGT-TCTGAAGCAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGA 309
Query 327 ATTATGAACAGTTTTATCAATGATATATTCGAGAAACTTGCGCAA-G-AAGCTTCAAAA- 383
|| ||||||||||| || || ||||| ||||||||| ||| ||| | || | || ||
Sbjct 310 ATCATGAACAGTTTCATTAACGATATCTTCGAGAAA-TTG-GCATCGGAATCGTCGAAGC 367
Query 384 TTAGCTAGGTATAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGA 443
|| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 368 TT-GCTAGGTATAATAAGAAGCCAACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGA 426
Query 444 CTAGTG-TTACCTGGTGAACTTGCTAAGCATGCTGTTTCTGAAGGAACTAAGGCTGTTAC 502
|| || || |||||||| || || || || |||||||||||||||||||||||||| ||
Sbjct 427 CTTGTTCTT-CCTGGTGAGCTCGCGAAACACGCTGTTTCTGAAGGAACTAAGGCTGTGAC 485
Query 503 TAAGTTTACTAGCTCTT 519
||| || || |||||||
Sbjct 486 TAAATTCACCAGCTCTT 502
> Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1
Length=526
Score = 315 bits (170), Expect = 4e-85
Identities = 315/381 (83%), Gaps = 25/381 (7%)
Strand=Plus/Plus
Query 156 gcagagaagaaaccaaaagccggaaaaaaaCTACCAAAAGAA---GCAGTCACCGGAGGA 212
||||||||||||||||||||||| || || || ||||| ||| || ||| ||||| ||
Sbjct 83 GCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAAGGAACCTGCCGTCGCCGGA-GA 141
Query 213 GTCGAGAAGAAGAAGAAACGAGTC-AAGAA-AAGC-ACAGAGACATACAAGATCTACATC 269
| ||||||||||| | || || ||||| || | | ||||| |||||||||||||||
Sbjct 142 --CAAGAAGAAGAAG--A-GA-TCTAAGAAGAA-CGTC-GAGACGTACAAGATCTACATC 193
Query 270 TTCAAGGTGTTGAAACAAGTTCATCCAGATATTGGAATCTCAAGTAAAGCTATGGGGATT 329
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 194 TTCAAGGTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATC 253
Query 330 ATGAACAGTTTTATCAATGATATATTCGAGAAACTTGC-GCAAGAAG-CTTCAAAA-TTA 386
||||||||||| ||||| ||||| || ||||||||||| | || | |||| || ||
Sbjct 254 ATGAACAGTTTCATCAACGATATCTTTGAGAAACTTGCTGGT-GA-GTCTTCGAAGCTT- 310
Query 387 GCTAGGTATAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGACTA 446
|| ||||| || ||||| || |||||||||||||||||||||||||| || || |||||
Sbjct 311 GCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTT 370
Query 447 GTGTTACCTGGTGAACTTG-CTAAGCATGCTGTTTCTGAAGGAACTAAGGCTGTTACTAA 505
||||| |||||||| ||| | || ||||||||||||||||| |||||||| ||||| ||
Sbjct 371 GTGTTGCCTGGTGAG-TTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTACGAA 429
Query 506 GTTTACTAGCT-CTTAGGTTT 525
|||||| || | ||||| |||
Sbjct 430 GTTTACGAG-TACTTAGATTT 449
> Ahg470811 jgi|Araly1|470811|fgenesh2_kg.1__765__AT1G07790.1
Length=666
Score = 257 bits (139), Expect = 6e-68
Identities = 358/462 (77%), Gaps = 22/462 (5%)
Strand=Plus/Plus
Query 66 ATGGCACCaaaagccgga-aagaaaccagcagag-aaaaagcc-c-gcagagaaagctcc 121
|||||||||| |||| || ||||| || || ||| ||||| || | || |||||| ||
Sbjct 66 ATGGCACCAAGAGCC-GAGAAGAAGCCCGCCGAGAAAAAACCCGCGGCTGAGAAA---CC 121
Query 122 agcagaagaag-agaaagtagccgaaaaagcaccagcagagaagaaaccaaaagccggaa 180
| |||| || | || | ||||||||||| || || ||||||||||| || || || |
Sbjct 122 GGTGGAAG-AGAACAAGGCCGCCGAAAAAGCTCCGGCGGAGAAGAAACCCAAGGCGGGGA 180
Query 181 aaaaaCTACCAAAAGAAGCAGTCACCGGAGG-AGTCGAGAAGAAGAAGAAACGAGTC-AA 238
| ||| | || | | | | | | ||||| | ||| || |||||||| || || ||
Sbjct 181 AGAAATTGCC-ACCG-A-C-G--A-AGGAGGCCGGCGACAAAAAGAAGAAGCG-TTCGAA 232
Query 239 GAAAAGCA-CAGAGACATACAAGATCTACATCTTCAAGGTGTTGAAACAAGTTCATCCAG 297
||||| || | || || ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 233 GAAAAACATC-GAAACCTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAG 291
Query 298 ATATTGGAATCTCAAGTAAAGCTATGGGGATTATGAACAGTTTTATCAATGATATATTCG 357
|||| || || ||||| ||||| ||||||||||||||||| || ||||| || || ||||
Sbjct 292 ATATCGGGATTTCAAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATCTTCG 351
Query 358 AGAAACTTGCGCAAGAAGCTTCAAAATTAGCTAGGTATAATAAGAAACCTACGATTACTT 417
|||| || || || ||| |||| || | || ||||| || ||||| || || || || |
Sbjct 352 AGAAGCTAGCTCAGGAATCTTCGAAGCTCGCAAGGTACAACAAGAAGCCGACAATCACAT 411
Query 418 CTAGGGAGATTCAGACAGCTGTTAGACTAGTGTTACCTGGTGAACTTGCTAAGCATGCTG 477
|| | ||||| ||||| ||||||||||| || | || |||||||| ||||| || ||||
Sbjct 412 CTCGCGAGATCCAGACGGCTGTTAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCTG 471
Query 478 TTTCTGAAGGAACTAAGGCTGTTACTAAGTTTACTAGCTCTT 519
| |||||||| || ||||| || || ||||||||||||||||
Sbjct 472 TCTCTGAAGGTACCAAGGCGGTGACCAAGTTTACTAGCTCTT 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25771091892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5