BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28725.1

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481786 jgi|Araly1|481786|fgenesh2_kg.4__846__AT2G28725.1          472    1e-132
  Ahg470812 jgi|Araly1|470812|fgenesh2_kg.1__766__AT1G07795.1         58.4    3e-08 


> Ahg481786 jgi|Araly1|481786|fgenesh2_kg.4__846__AT2G28725.1
Length=321

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 299/321 (93%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  1    ATGGAACCAATTCTTGAAAAAACCTCAACACGTTGGGAAGTTCTTGTTCAAACAGCAACA  60
            |||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||||
Sbjct  1    ATGGAACCAATTCTTGAAAAAATCTCAACTCCTTGGCAAGTTCTTGTTCAAACAGCAACA  60

Query  61   TGGACAATTCTCCTAATGATCACAGTGGCTTTGGCTTCATTTGCTCCGGAGATGGCGTTT  120
            |||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct  61   TGGACAATACTCCTAATGATCACAGTGTCTTTGGCTTCATTTGCTCCAGAAATGGCGTTT  120

Query  121  GTGTCGAAATTAAAGTCATCTTCCGATGGGTTCGTTAGGATTCCGATGGATTTACCGGGA  180
            ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  121  GTGTCGAAAATAAAATCATCTTCCGATGGGTTCGTTAGGATTCCGATGGATTTATCGGGA  180

Query  181  GAAATGTTAATCTTGCCGTCAGAAATGGTGAAGAATTCATATTTAGACGtttttttACCA  240
            |||||||| ||||| ||||| || ||||||||||| |||| ||||||||||||| |||| 
Sbjct  181  GAAATGTTGATCTTACCGTCGGAGATGGTGAAGAACTCATCTTTAGACGTTTTTATACCG  240

Query  241  ACGATATTCGCAGGAGTTATGGTCATTGCTTCTGTTTCTTTATTACGATCATGTTTTGGT  300
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  241  ACGATATTCGCAGGTGTTATGGTCATTGCTTCTGTTTCTTTATTACGATCATGTCTTGGT  300

Query  301  ATTGAAGGTGTTGTAGAAGAA  321
            |||||||||||||||| ||||
Sbjct  301  ATTGAAGGTGTTGTAGTAGAA  321


> Ahg470812 jgi|Araly1|470812|fgenesh2_kg.1__766__AT1G07795.1
Length=607

 Score = 58.4 bits (31),  Expect = 3e-08
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  94   GCTTCATTTGCTCCGGAGATGGCGTTTGTGTCGA  127
            ||||| ||||||||||||||||||||||||||||
Sbjct  273  GCTTCGTTTGCTCCGGAGATGGCGTTTGTGTCGA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12019010535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5