BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28725.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value Ahg481786 jgi|Araly1|481786|fgenesh2_kg.4__846__AT2G28725.1 472 1e-132 Ahg470812 jgi|Araly1|470812|fgenesh2_kg.1__766__AT1G07795.1 58.4 3e-08 > Ahg481786 jgi|Araly1|481786|fgenesh2_kg.4__846__AT2G28725.1 Length=321 Score = 472 bits (255), Expect = 1e-132 Identities = 299/321 (93%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 1 ATGGAACCAATTCTTGAAAAAACCTCAACACGTTGGGAAGTTCTTGTTCAAACAGCAACA 60 |||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||| Sbjct 1 ATGGAACCAATTCTTGAAAAAATCTCAACTCCTTGGCAAGTTCTTGTTCAAACAGCAACA 60 Query 61 TGGACAATTCTCCTAATGATCACAGTGGCTTTGGCTTCATTTGCTCCGGAGATGGCGTTT 120 |||||||| |||||||||||||||||| ||||||||||||||||||| || ||||||||| Sbjct 61 TGGACAATACTCCTAATGATCACAGTGTCTTTGGCTTCATTTGCTCCAGAAATGGCGTTT 120 Query 121 GTGTCGAAATTAAAGTCATCTTCCGATGGGTTCGTTAGGATTCCGATGGATTTACCGGGA 180 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 GTGTCGAAAATAAAATCATCTTCCGATGGGTTCGTTAGGATTCCGATGGATTTATCGGGA 180 Query 181 GAAATGTTAATCTTGCCGTCAGAAATGGTGAAGAATTCATATTTAGACGtttttttACCA 240 |||||||| ||||| ||||| || ||||||||||| |||| ||||||||||||| |||| Sbjct 181 GAAATGTTGATCTTACCGTCGGAGATGGTGAAGAACTCATCTTTAGACGTTTTTATACCG 240 Query 241 ACGATATTCGCAGGAGTTATGGTCATTGCTTCTGTTTCTTTATTACGATCATGTTTTGGT 300 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 241 ACGATATTCGCAGGTGTTATGGTCATTGCTTCTGTTTCTTTATTACGATCATGTCTTGGT 300 Query 301 ATTGAAGGTGTTGTAGAAGAA 321 |||||||||||||||| |||| Sbjct 301 ATTGAAGGTGTTGTAGTAGAA 321 > Ahg470812 jgi|Araly1|470812|fgenesh2_kg.1__766__AT1G07795.1 Length=607 Score = 58.4 bits (31), Expect = 3e-08 Identities = 33/34 (97%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 94 GCTTCATTTGCTCCGGAGATGGCGTTTGTGTCGA 127 ||||| |||||||||||||||||||||||||||| Sbjct 273 GCTTCGTTTGCTCCGGAGATGGCGTTTGTGTCGA 306 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12019010535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5