BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28740.1
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481787 jgi|Araly1|481787|fgenesh2_kg.4__847__AT2G28740.1 508 1e-143
Ahg484971 jgi|Araly1|484971|fgenesh2_kg.5__963__AT3G45930.1 276 1e-73
Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 270 6e-72
> Ahg481787 jgi|Araly1|481787|fgenesh2_kg.4__847__AT2G28740.1
Length=369
Score = 508 bits (275), Expect = 1e-143
Identities = 303/317 (96%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 38 aaaaatgtcaggaagaggaaaaggaggaaaagggttaggcaaaggaggagcaaagagACA 97
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2 AAAAATGTCAGGAAGAGGAAAAGGAGGCAAAGGATTAGGCAAAGGAGGAGCAAAGAGACA 61
Query 98 CAGAAAGGTTCTAAGAGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGC 157
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CAGAAAAGTTCTTCGTGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGC 121
Query 158 TCGTAGAGGAGGTGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTT 217
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TCGAAGAGGAGGTGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTT 181
Query 218 GAAGATTTTTCTGGAGAATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCGAGGAG 277
|||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 182 GAAGATCTTTCTAGAGAATGTGATTAGAGATGCTGTTACTTATACAGAGCATGCGAGGAG 241
Query 278 GAAGACGGTGACTGCTATGGATGTTGTTTATGCCTTGAAGAGACAAGGAAGAACTCTATA 337
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 242 GAAGACTGTGACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGAACTCTGTA 301
Query 338 TGGATTTGGTGGTTGAT 354
|||||||||||||||||
Sbjct 302 TGGATTTGGTGGTTGAT 318
Score = 58.4 bits (31), Expect = 5e-08
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 382 ATGATGATGATTTAAGTCTTGCGATCAAGAAATT 415
||||| ||||||||||||||||||||||||||||
Sbjct 317 ATGATAATGATTTAAGTCTTGCGATCAAGAAATT 350
> Ahg484971 jgi|Araly1|484971|fgenesh2_kg.5__963__AT3G45930.1
Length=458
Score = 276 bits (149), Expect = 1e-73
Identities = 259/311 (83%), Gaps = 12/311 (4%)
Strand=Plus/Plus
Query 39 aaaatgtcaggaagaggaaaaggaggaaaagggttaggcaaaggaggag-caaagagACA 97
||||||||||| | ||||| ||||| ||||| || ||||||||||||| |||| | ||
Sbjct 24 AAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGATTGGGCAAAGGAGGAGCCAAA-CGTCA 82
Query 98 CAGAAAGGTTCTAAGAGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTT-G 156
||| |||||||||||||||||||| ||||||||||| ||||| |||||||| | || |
Sbjct 83 CAGGAAGGTTCTAAGAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAG-ATTGG 141
Query 157 CTCGTAGAGGAGGTGTGAAGAGAATCAGTGGAT-TGATCTATGAAGAAACGA-GAGGTGT 214
|||||||||| ||||| ||| | || ||||| | ||||||| || || || | | || ||
Sbjct 142 CTCGTAGAGGTGGTGTCAAGCGTATTAGTGG-TCTGATCTACGAGGAGAC-ACGTGGCGT 199
Query 215 GTTGAAGAT-TTTTCTGGAGAATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCGA 273
| ||||| |||| |||||||||| ||| | || || |||||||| |||||||| ||
Sbjct 200 ACTCAAGATCTTTT-TGGAGAATGTTATTCGTGACGCCGTTACTTATACTGAGCACGCTC 258
Query 274 GGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGC-CTTGAAGAGACAAGGAAGAACT 332
|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 259 GGAGGAAGACGGTGACTGCTATGGATGTCGTTTATGCTCTT-AAGAGACAAGGAAGAACT 317
Query 333 CTATATGGATT 343
|| ||||||||
Sbjct 318 CTCTATGGATT 328
> Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1
Length=501
Score = 270 bits (146), Expect = 6e-72
Identities = 260/313 (83%), Gaps = 16/313 (5%)
Strand=Plus/Plus
Query 39 aaaatgtcaggaagaggaaaaggaggaaaagggttaggcaaaggaggag-caaagagACA 97
||||||||||| | ||||| ||||| ||||| || ||||||||||||| |||| | ||
Sbjct 48 AAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAA-CGTCA 106
Query 98 CAGAAAGGTTCTAAGAGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTT-G 156
||| |||||||| ||||| ||||| ||||||||||| ||||| |||||||| | || |
Sbjct 107 CAGGAAGGTTCTGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAG-ATTGG 165
Query 157 CTCGTAGAGGAGGTGTGAAGAGAATCAGTGGAT-TGATCTATGAAGAAACGA-GAGGTGT 214
|||||||||| || || ||| | |||||||| | ||||||| || || || | | || ||
Sbjct 166 CTCGTAGAGGTGGAGTCAAGCGTATCAGTGG-TCTGATCTACGAGGAGAC-ACGTGGCGT 223
Query 215 GT-TGAAGAT-TTTTCTGGAGAATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCG 272
| | ||||| |||| |||||||||| || | || || ||||||||||||||||| ||
Sbjct 224 -TCTCAAGATCTTTT-TGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGC- 280
Query 273 A-GGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGC-CTTGAAGAGACAAGGAAGAA 330
| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 281 ACGGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTT-AAGAGACAAGGAAGAA 339
Query 331 CTCTATATGGATT 343
|||| ||||||||
Sbjct 340 CTCTCTATGGATT 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18467305076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5