BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28760.2
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481790 jgi|Araly1|481790|fgenesh2_kg.4__850__AT2G28760.2 2119 0.0
> Ahg481790 jgi|Araly1|481790|fgenesh2_kg.4__850__AT2G28760.2
Length=1395
Score = 2119 bits (1147), Expect = 0.0
Identities = 1326/1408 (94%), Gaps = 30/1408 (2%)
Strand=Plus/Plus
Query 1 TTGGTGACCAACTTAAAATTGGGTTTGGTGCATTTCGTAGTCTCACTTTTCGTTCATTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGGTGACCAACTTAAAATTGGGTTTGGTGCATTTCGTAGTCTCACTTTTCGTTCATTTG 60
Query 61 AAGCTTC-ATTTTTTCTGAAATGGCGTCTAATTCTTCTAACGGGACGACGACGACAAAGC 119
||||||| | |||||||||||||||| | |||||||||||||||| |||||| |||||||
Sbjct 61 AAGCTTCGA-TTTTTCTGAAATGGCGACGAATTCTTCTAACGGGATGACGACAACAAAGC 119
Query 120 CACCACCTATGCCGTCTCCTCTGCGTAATTCCAAGTTTTTTCAGTCGAATATGAGGATCT 179
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 120 CACCACCGATGCCGTCTCCTCTGCGTAATTCCAAGTTTTTTCAGTCAAATATGAGAATCT 179
Query 180 TGGTGACCGGAGGAGCTGGATTCATTGGTTCACATCTCGTTGATAAATTGATGCAAAACG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGGTGACCGGAGGAGCTGGATTCATTGGTTCACATCTCGTTGATAAATTGATGCAAAACG 239
Query 240 AAAAGAATGAAGTAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAAGAATGAAGTAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGA 299
Query 300 AATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGATGTGACTGAACCTCTT-TTC 358
|||||||||||||||||||||||||||| |||||||||||||||||||||| | || ||
Sbjct 300 AATGGATTGGTCATCCAAGATTTGAGCTCATTCGTCATGATGTGACTGAACAT-TTGTTA 358
Query 359 GTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATAC 418
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 359 GTTGAGGTTGATCAAATCTACCATTTAGCATGTCCTGCATCTCCAATTTTCTACAAATAC 418
Query 419 AACCCCGTTAAGACGATAAAAACAAATGTGATTGGCACACTTAACATGTTAGGACTAGCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AACCCCGTTAAGACGATAAAAACAAATGTGATTGGCACACTTAACATGTTAGGACTAGCT 478
Query 479 AAGCGAGTTGGAGCAAGAATTTTACTTACTTCCACATCTGAAGTGTATGGTGATCCTTTG 538
|||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 479 AAGCGAGTCGGCGCAAGAATTTTACTTACTTCGACATCTGAAGTGTACGGTGATCCTTTG 538
Query 539 GTTCACCCTCAAACCGAGAGCTATTGGGGAAATGTAAACCCGATCGGTGTTAGAAGCTGT 598
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 539 GTTCACCCTCAACCCGAGAGCTATTGGGGAAATGTAAACCCCATCGGTGTTAGAAGTTGT 598
Query 599 TATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGG 658
|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 599 TACGATGAAGGAAAACGTGTTGCAGAAACACTTATGTTTGATTACCATAGGCAACATGGG 658
Query 659 ATTGAGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGAT 718
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTGAGATACGCATAGCAAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGAT 718
Query 719 GGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGGGGAGAAGCTCTGACTGTTCAG 778
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTCGTGTCGTGAGCAACTTCATCGCTCAGGCTCTCAGGGGAGAAGCTCTGACTGTTCAG 778
Query 779 AAACCGGGAACACAAACCCGCAGTTTCTGTTATGTTTCGGACATGGTGGAAGGTCTAATG 838
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 AAACCGGGAACACAAACCCGCAGTTTCTGTTATGTTTCCGACATGGTGGAAGGTCTAATG 838
Query 839 CGTTTGATGGAAGGAGACCAAACCGGACCGATAAACATAGGCAATCCAGGCGAATTCACG 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGTTTGATGGAAGGGGACCAAACCGGACCGATAAACATAGGCAATCCAGGCGAATTCACG 898
Query 899 ATGGTTGAGCTCGCTGAGACGGTTAAAGAGCTTATTAAACCGGACGTGGAGATAAAGATG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGGTTGAGCTCGCTGAGACGGTTAAAGAGCTTATTAAACCGGACGTGGAGATAAAGATG 958
Query 959 GTAGAGAACACACCTGATGATCCAAGGCAGAGGAAACCAGACATAAGCAAAGCTAAAGAA 1018
|| ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 959 GTGGAGAACACACCAGATGATCCAAAACAGAGAAAACCAGACATAAGCAAAGCTAAAGAA 1018
Query 1019 GTTCTTGGTTGGGAACCAAAGGTGAAGCTACGTGAGGGGCTTCCTCTTATGGAAGAAGAT 1078
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1019 GTTCTTGGTTGGGAACCAAAGGTGAAGCTACGTGAAGGGCTTCCTCTTATGGAAGAAGAT 1078
Query 1079 TTTCGTCTAAGGCTTGGTGTTCCGAAGAAGTAAAACTTATTTTCCaaaa-aaaaGAAGAA 1137
||||||||||||||||||||| ||||||||| || ||||||||| |||| ||||||| |
Sbjct 1079 TTTCGTCTAAGGCTTGGTGTTTCGAAGAAGTGAAGCTTATTTTC-AAAACAAAAGAA-A- 1135
Query 1138 GAAAAATAATTGCTATTTTAATTTCATGGAATTGTGTGGTCTTATCATTTTGTTTGTTTG 1197
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1136 GAAAAATAATTGCTATTTTAATTTCATGGAATTGTGTGTTCTTATCGTTTTGTTTGTTTG 1195
Query 1198 TTTGAA------AT-C-GGGGTTCCAAGTCGAAGCAAGTGCACACATA-TCCCCGGAACA 1248
|||| || | ||||||||||| ||||||||| ||| || | |||||| ||||
Sbjct 1196 TTTGTTTGTTTGATACCGGGGTTCCAAGCCGAAGCAAGCGCATAC-TGGTCCCCGAAACA 1254
Query 1249 TGTGGAGCATGTCTTTTAATCTTTCTCTTTGCATTTTGAGTTTGTAGGAAATAAGCGTCC 1308
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1255 TGTGGATCATGTCTTTTAATCTTTCTCTTTGCATTTTGAGTTTGTAGGGAATAAGCATCC 1314
Query 1309 TAACGAGGAACATTTTAGGGAAGTGATGTTACGTTACTACTTGAATTTTATTA-T--GA- 1364
||||||||||||||| ||||| |||||||||| | ||| | ||||||||||| | ||
Sbjct 1315 TAACGAGGAACATTT-AGGGA-GTGATGTTAC-T-ACT--T-GAATTTTATTACTATGAG 1367
Query 1365 A-TGTAATCAGTGAGATGTTTTAAGCTT 1391
| |||||||| |||||||||||||||||
Sbjct 1368 AATGTAATCAATGAGATGTTTTAAGCTT 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5