BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28780.1
Length=2596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320665 jgi|Araly1|320665|fgenesh1_pm.C_scaffold_4000722 3725 0.0
> Ahg320665 jgi|Araly1|320665|fgenesh1_pm.C_scaffold_4000722
Length=2388
Score = 3725 bits (2017), Expect = 0.0
Identities = 2272/2396 (95%), Gaps = 13/2396 (1%)
Strand=Plus/Plus
Query 141 ATGCTAATGACGGAGAGAGGCCGAGCCATGTGGCGCACGTGCCTAGCCTCAGCGTTCCGA 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTAATGACGGAGAGAGGCCGAGCCATGTGGCGCACGTGCCTAGCCTCAGCGTTCCGA 60
Query 201 ACAGCTCTAGCCTGCACAATCGTTGGTTCAGCTACACTATACGGTCCAGAATGGATCAAC 260
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 61 ACAGCTCTAGCCTGCACAATCGTTGGCTCAGCTACACTTTACGGTCCCGAATGGATCAAC 120
Query 261 CGCCACGTGGCATTCCCGGCCTTCTCTTACGTCACGGTTATCCTCATCATCACGGATGCT 320
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 CGCCACGTGGCATTCCCGGCCTTCTCTTACGTCACTGTTATCCTCATCATCACCGATGCT 180
Query 321 ACACTCGGAGACACGCTACGTGGCTGCTGGTTAGCTCTTTACGCCACGTGTCAGAGCGTG 380
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 ACACTCGGAGACACGCTACGTGGCTGCTGGTTAGCTCTTTACGCCACGTGTCAAAGCGTG 240
Query 381 GGACCTGCGATCGTCACGTTAAAGCTTATAAGACCAGCTCGTCTGACAGCCGAAACCACG 440
|||||||||||| |||||||||||||||| ||||||||||||| || |||||||| |||
Sbjct 241 GGACCTGCGATCATCACGTTAAAGCTTATTGGACCAGCTCGTCTCACGGCCGAAACTACG 300
Query 441 GCTCTGGCGGCGGCTCTAGCGGCGTTTGTGGTAGTGCTGCCTAACAGTTCGACTCACTTG 500
||||| || ||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||
Sbjct 301 GCTCTCGCTGCGGCTCTAGCGGCGTTCGTGGTGGTGCTACCTAATAGTTCGACCCACTTG 360
Query 501 GTGGCTAAGAGAATCGCGTTAGGACAAATCGTTCTTATATATGTTATTGGTTATATCAAA 560
||||||||||||||||||||||| || |||||||| || ||||||||||||||||| |||
Sbjct 361 GTGGCTAAGAGAATCGCGTTAGGCCAGATCGTTCTCATTTATGTTATTGGTTATATAAAA 420
Query 561 GGAGCTAAGACTGATCCAGTTATGCACCCTCTTCAAGTCGCGGCTAGCACCGCGCTTGGT 620
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAGCTGAGACTGATCCAGTTATGCACCCTCTTCAAGTCGCGGCTAGCACCGCGCTTGGT 480
Query 621 GTTGTAGCTTGCGTTCTTGCACTACTCGTCCCACTACCTCGCTTGGCTACTTGCGAGGTG 680
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 481 GTTGTAGCTTGCGTTCTTGCACTACTCGTCCCACTTCCTCGCTTGGCTACTTGTGAGGTG 540
Query 681 AAACAAAGCTGCAAAGAGCTTGGTCAAAATGTAACAACGAGAGTGAAGTTGTATATGAAG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAACAAAGCTGCAAAGAGCTTGGTCAAAATGTAACAACGAGAGTGAAGTTGTATATGAAG 600
Query 741 GCTTTTTGCTCCGATGATAG-CATGTCAGCAACGGCTTCAGTCTCACAGGCTCGAGTGTT 799
|| ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 601 GCATTTTGCTCCGATGAT-GCCATGTCTGCAACGGCTTCAGTCTCACAGGCTCGAGTGTT 659
Query 800 GGCTCGTTCTTCCTCCAAGCTTTATCAAACACTCAAACGTTACCAACCAAGCATGACATG 859
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCTCGTTCTTCCTCTAAGCTTTATCAAACACTCAAACGTTACCAACCAAGCATGACATG 719
Query 860 GGAGAGGCTTCCATTTAAGATATGGAGGTGGCAAAACGTGAATGATAACAAAGGAGAGAA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGAGAGGCTTCCATTTAAGATATGGAGGTGGCAAAACGTGAATGATAACAAAGGAGAGAA 779
Query 920 ACTACAAAGCATGGAAATTGCTCTTAGAGGAATGGAAATGGTAGTAGCAAGCAAATCTCC 979
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 ACTACAAAGCATGGAAATTGCTCTTAGAGGAATGGAAATGGTAGTCGCAAGCAAATCTCC 839
Query 980 TATTCCTTCGAGCTTACTTGCGGGTGAAGTAAAAGAAGATCTCAAGAATATACAAGAACG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TATTCCTTCGAGCTTACTTGCGGGTGAAGTAAAAGAAGATCTCAAGAATATACAAGAACG 899
Query 1040 TGTGATTCTCTCAATTAAAAGAGTGAATAATAGTTCG-CAACCGTCAGTAACACCAGAAT 1098
||||||||||||||| ||| |||| || |||||| || |||||||| |||||||||||||
Sbjct 900 TGTGATTCTCTCAATCAAACGAGTTAACAATAGT-CGGCAACCGTCGGTAACACCAGAAT 958
Query 1099 CTGATCCGAAAAACCCCGATGAGTGCCTCCAAACACTTCAGGAAATCCCGGGAACGCCTC 1158
| ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 959 CCGATCCGAAAAAACCTGATGAGTGCCTCCAAACACTTCAGGAAATCCCGGAAACGCCTC 1018
Query 1159 AAGATTTGCCCTTTTACTTCTTCTTGTTCTGCATCAGGCTCCTTGAAACCATCATAATAG 1218
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 1019 AAGATTTACCCTTTTACTTCTTCTTGTTCTGCATCAGGCTCCTTGAAATCATCACAATGG 1078
Query 1219 CTAAACCGGAGGAGAACAAAGTCAAGGTCTTAGAAAACAAATTCAAGACGAGGTCTTGGA 1278
||||||||||||||||||| ||||||||||||||||| | | ||| || || |||||||
Sbjct 1079 CTAAACCGGAGGAGAACAAGGTCAAGGTCTTAGAAAA-A--TCCAAAACTAGATCTTGGA 1135
Query 1279 TAAGTGATTGGGACAGCAAGAAAATTATGCCGGCGCTAAAGCTATCACTCTCATTAGGCT 1338
|||||||||||||||||||||| ||||||| ||| | |||||||| || ||||||||||
Sbjct 1136 TAAGTGATTGGGACAGCAAGAAGGTTATGCCCGCGTTGAAGCTATCGCTTTCATTAGGCT 1195
Query 1339 TAGCGATTTTGCTAGGTTCGATGTTTAGTAAGCCAAACGGTTATTGGGCTGGTTTACCCG 1398
|||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 TAGCGATTATGCTAGGTTCAATGTTTAGTAAGCCAAACGGGTATTGGGCTGGTTTACCCG 1255
Query 1399 TAGC-AGTCAGCTTCGCAGCGGCCAGAGAGGCGACGTTTAAAGTGACGAATGTGAAGGCA 1457
|||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1256 TAGCCA-TCAGCTTCGCAGCGGCGAGAGAGGCGACGTTTAAAGTGGCGAATGTGAAGGCA 1314
Query 1458 CAAGGGACAGTGATAGGGACAGTGTATGGAGTGATGGGCTGTTTTGTGTTTCAGAAGTTT 1517
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1315 CAAGGGACAGTGATAGGGACAGTGTATGGAGTGATGGGATGTTTTGTGTTTCAGAAGTTT 1374
Query 1518 TTGACGGTTCGGTTTCTTTCTTTGCTTCCATGGTTTCTCTTCTCTAGCTTCTTAAGCAGG 1577
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1375 TTGACGGTTAGGTTTCTTTCTTTGCTTCCATGGTTTCTCTTCTCTAGCTTCTTGAGCAAG 1434
Query 1578 AGCAAGA-TGTACGGGCAAGCCGGAGGGATATCAGCGGCCATAGGGGCCGTTTTGATTCT 1636
||| || ||||||| || |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1435 AGCC-GAATGTACGGACAGGCCGGAGGGATATCAGCGGCGATAGGAGCCGTTTTGATTCT 1493
Query 1637 CGGAAGAAAGAATTTCGGGCCACCAAGCGAGTTCGCGATCGAGAGAATTATCGAGACTTT 1696
|||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1494 CGGACGAAAGAATATCGGGCCACCAAGCGAGTTCGCGATCGAGAGAATCATCGAGACTTT 1553
Query 1697 TATTGGGTTGTCTTGTTCGATCATGGTGGAGCTTGTCTTTCAGCCTACAAGAGCCGCTAA 1756
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1554 TATTGGGTTGTCTTGTTCGATCATGGTGGAGCTTGTCTTTCAGCCCACGAGAGCCGCTAA 1613
Query 1757 CATAGCAAAACTTGAGCTCTCTAGAAGCTTCCACGCTTTGTACGAGTGTGCAAGCTTGTT 1816
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CATAGCGAAACTTGAGCTCTCTAGAAGCTTCCACGCTTTGTACGAGTGTGCAAGCTTGTT 1673
Query 1817 TGGAGCTAAAGCGAGTAAAGCAGATATAATGGAAAGTCAAAAGAAGTTGAGAAGTCATTT 1876
|||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1674 TGGAGCTAAAGCTAGTAAAGCGGAGATAATGGAGAGTCAAAAGAAGTTGAGAAGTCATTT 1733
Query 1877 AAATGAGCTCAAGAAGTTCACAGCAGAAGCCCATGCAGAGCCAAGTTTCTGGTTTTCGCC 1936
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1734 AAATGAGCTCAAGAAGTTCACAGCAGAAGCCCACGCAGAGCCAAGTTTCTGGTTTTCGCC 1793
Query 1937 TTTCAACTTTTCTTGCTACGAAAAGCTGTTCAAGTCATTGTCTAAAATGGCTGATCTATT 1996
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1794 TTTCAACTTTTCTTGCTACGAAAAGCTTTTCAAGTCATTGTCTAAAATGGCTGATCTATT 1853
Query 1997 GCAATTCAGCGGTTACGCCATAGGCTTTCTTGGAGAACAAGGAAAAACAAAATCACCGCA 2056
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1854 GCAATTCAGTGGTTACGCGATAGGCTTTCTTGGAGAACAAGGAAAAACAAAATCACCACA 1913
Query 2057 GTGTAAGGAGATTCTAAGCAACGTAGACAAAGATCTCAAGAGTCTAACAGAAAGCATAGG 2116
||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1914 GTGCAAAGAGATTCTAAGCAACGTAGACAAAGATCTGAAGAGTCTAACAGAAAGCATAGC 1973
Query 2117 TCTTTTAGCCAAATCATTCGAGGAAATCACACTT-CTAAAATCACTAGACGCACTCGAAA 2175
|||||||||||||||||||||||||||||| || || |||||||||||||| |||| ||
Sbjct 1974 TCTTTTAGCCAAATCATTCGAGGAAATCACT-TTGCTCAAATCACTAGACGCCCTCGGAA 2032
Query 2176 AGGCGCTCGCCAAGAGCGACAACACCTCATGGGACATTGAGCTCGGGAAGACACCGAACC 2235
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2033 AGGCGCTTGCAAAGAGCGACAACACCTCATGGGACATTGAGCTCGGAAAGACACCAAACC 2092
Query 2236 CTAGCTTCTCAACCGCCGTGAGCGAGCCGGAGAAGATTTTAGAAACGTATCTCCAGCATT 2295
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2093 CTAGCTTCTCAACCGCGGTGAGCGAACCGGAGAAGATATTAGAAACGTATCTCCAGCATT 2152
Query 2296 GCAGAAGCGTGGCGGATGGACTATTCCGTGTGGAAGAAGATGGAGAAGAAGAGGTTGAAG 2355
|||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 2153 GCAGAAGCGTTGCGGATGGAATATTCCGTGTGGAAGAAGGTGGAGAAGAAGAGGTTAAAG 2212
Query 2356 TGGACAAGAGTGAGGTTGTGTTGAGTTTGTGTGCATTAGGGTTTTGTGTGGAGAGAATTG 2415
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2213 TGGATAAGAGTGAGGTTGTGTTGAGTTTGAGTGCATTAGGGTTTTGTGTGGAGAGAATTG 2272
Query 2416 GGAAAGAGACAAGAGAGATTGAGGAGATGGTTAAAGAGGTTGTGCAATCGGAAAATCCTT 2475
|||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||
Sbjct 2273 GGAAAGAGACAAGAGAGATTGAGGAGATGGTTAAGGAGGTTCTGCAATCGGAGAACCCTT 2332
Query 2476 CAAGCCATGTTAACTTGCATGAGATCTCTTGCAAAATACGTTCTTTGTATAAATGA 2531
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 CAAGTCATGTTAACTTGCATGAGATCTCTTGCAAAATACGTTCTTTGTATAAATGA 2388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97891929650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5