BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28790.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481792 jgi|Araly1|481792|fgenesh2_kg.4__852__AT2G28790.1 1264 0.0
> Ahg481792 jgi|Araly1|481792|fgenesh2_kg.4__852__AT2G28790.1
Length=933
Score = 1264 bits (684), Expect = 0.0
Identities = 778/824 (94%), Gaps = 4/824 (0%)
Strand=Plus/Plus
Query 14 ACACAATGGCTAAAAcctctcttcctctcgccgcctccttcctcctcctcatctccttct 73
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACACAATGGCTAAAACCTCACTTCCTCTCGCCGCCTCCTTCCTCCTCCTCATCTCCTTCT 60
Query 74 cctccGCCGTAGACACTTCCCGTCTCTTCCTCACCGTCGTCAACAACTGTCCCTTCACTG 133
|||| ||||||||||| |||||||||||||||| || ||||||||||||||||||| |
Sbjct 61 CCTCAGCCGTAGACACCAGCCGTCTCTTCCTCACCATCTTCAACAACTGTCCCTTCACCG 120
Query 134 TCTGGCCAGCCATTCAACCCAACGCCGGCCACCCCGTCCTAGAGAAAGGTGGCTTCGCTC 193
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 121 TCTGGCCAGCCATTCAACCCAACGCTGGCCACCCCGTCCTAGAGAAAGGTGGTTTCGTTC 180
Query 194 TCCCAACTTTCACTCACCGCTCCTTCAACGTTCCAACCACACACTGGTCCGGTCGCATCT 253
|||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 181 TCCCAAAGTACACTCACCGCTCCTTCAACGCTCCAACCACACTCTGGTCCGGTCGCATCT 240
Query 254 GGGCCAGAACCTGG-TGTGCCCACTACAACGGAAAATTCTCCTGCCTCACCGGAGACTGC 312
||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 241 GGGCCAGAACC-GGCTGTGCCCACTACAACGGCAAATTCTCCTGCATCACCGGAGACTGC 299
Query 313 GGAAACCGCCTGGAATGCAACGGTCTCGGCGGGGCACCACCAGCTTCTCTAGCTCAGTTC 372
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 300 GGAAACCGCCTCGAATGCAACGGTCTCGGCGGCGCACCACCAGCTTCTCTAGCTCAATTC 359
Query 373 GACCTCCACCACGGTGGTCACCACGACTTCTCCTCTTACGGTGTCTCTCTCGTTGACGGT 432
||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||
Sbjct 360 GACCTCCACCACGGTGGTCACAATGACTTCTCCTCTTACGGCGTCTCTCTCGTCGACGGT 419
Query 433 TACAATGTTCCGATGACCGTGACTCCTCACGAAGGCCATGGTGTCTGTCCTGTCGTTGGT 492
||||| ||||| ||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 420 TACAACGTTCCAATGACTGTGACTCCTCACGAAGGCCATGGTGTCTGTCCCGTTGTAGGA 479
Query 493 TGTCGTGAAGATCTAATAAAAACGTGTCCGGCTCATCTTCAGGTCCGGTCACACAGTGGA 552
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 TGCCGTGAAGATCTTATAAAAACATGTCCGGCTCATCTTCAGGTCCGGTCACACAGTGGA 539
Query 553 CACGTGGTGGCTTGTAAGAGTGGGTGTGAGGCTTTCCATACAGACGAGCTGTGTTGTCGT 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CACGTGGTGGCTTGTAAGAGTGGGTGTGAGGCTTTCCATACAGACGAGCTGTGTTGTCGA 599
Query 613 GGTCATTACAATAGCCCTAACACGTGTAAAGCTTCGAGCCATTCGCTGTTCTTTAAGCAT 672
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GGTCATTACAATAGTCCTAACACGTGTAAAGCTTCGAGCCATTCGTTGTTCTTTAAGCAT 659
Query 673 GCGTGTCCTTCGAGTTTCACTTTTGCTCATGATAGTCCTTCGCTTATGCATGACTGTGCT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 GCGTGTCCTTCGAGTTTCACTTTTGCTCATGATAGTCCTTCGCTTATGCATGACTGTTCT 719
Query 733 TCTCCTAGAGAGCTCAAAGTCATCTTCTGCCACTAATGTTTCGGCCATGTTCTAGGGTTA 792
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TCTCCTAGAGAGCTCAAAGTCATCTTCTGCCACTAATGTTTCGGCTATGTTCTAGGGTTA 779
Query 793 TTGTCGTAACATCGGACTGATCTTCTAATG-CTTTTGTTTGGTT 835
|| ||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 780 TTATCGTAACATCGGACTGATCTTCTCATGACTTT-GTTTGGTT 822
Score = 100 bits (54), Expect = 2e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 937 tttttATTTCGATTCTGTAATGCTTAAACATTGATAGAGAAGTTATAATTGGAATGGTAA 996
|||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 868 TTTTTATTTCGATTCTATAATGCTTAAACATTGATAGATAAGTTAAAATTAGAATGGTAA 927
Query 997 CAATTT 1002
||||||
Sbjct 928 CAATTT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5