BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28800.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933344 jgi|Araly1|933344|scaffold_401332.1 2211 0.0
> Ahg933344 jgi|Araly1|933344|scaffold_401332.1
Length=1421
Score = 2211 bits (1197), Expect = 0.0
Identities = 1335/1401 (95%), Gaps = 12/1401 (1%)
Strand=Plus/Plus
Query 90 CTCCAATGGCGAGAGTTCTAGTCTCGTCTCCATCTTCATTCTTCGGTTCACCGTTGATTA 149
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 20 CTCCAATGGCGAGAGTTCTAGTCTCGTCTCCCTCTTCATTCTTCGGTTCACCGTTGATTA 79
Query 150 AACCGTCGTCATCTCTCCGTCACAGTGGAGTAGGAGGAGGAGGAACCGCTCAATTTCTTC 209
|||||||||| |||||||||||| ||| |||||||| | ||||||||||| |
Sbjct 80 AACCGTCGTCGTCTCTCCGTCAC-----AGT----GGAGGAGG-A--GCTCAATTTCTAC 127
Query 210 CATACCGGAGTAATAATAACAAACTCTTCACTACTTCAACCACCGTACGATTCAGCTTAA 269
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 128 CATACCGGAGTAATAATAACAAGCTTTTCACTACTTCAACCACCGTACGATTCAGCTTAA 187
Query 270 ACGAGATTCCTCCTTTCCATGGCTTGGATTCATCTGTAGACATCGGAGCGATTTTCACCA 329
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 188 ACGAGATTCCTCCTTTCCATGGATTGGATTCATCGGTAGACATCGGAGCGATTCTCACCA 247
Query 330 GAGCTGAATCTCTTCTCTATACAATAGCTGACGCCGCCGTTGTTGGTGCTGATTCCGTCG 389
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 248 GAGCTGAGTCTCTTCTTTATACTATAGCTGACGCCGCCGTTGTTGGTGCTGATTCCGTCG 307
Query 390 TAACTACTGATTCATCCGCCGTGCAGAAGAGTGGTGGTTGGTTTGGTTTTATCTCCGATG 449
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTTCTACTGATTCCTCCGCCGTGCAGAAGAGTGGTGGTTGGTTTGGTTTTATCTCCGATG 367
Query 450 CTATGGAATTGGTTCTTAAGATTTTGAAGGATGGATTATCAGCGGTTCATGTACCTTATG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 368 CTATGGAATTGGTTCTTAAGATTTTGAAGGATGGATTATCAGCGGTTCATGTACCGTATG 427
Query 510 CTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACGTATCCTTTGA 569
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 428 CTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACTTATCCTTTGA 487
Query 570 CTAAGCAACAGGTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGA 629
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CTAAGCAACAGGTTGAATCGACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGA 547
Query 630 TTCAACAACGTTACGCAGGAAATCAGGAGAGGATACAACTAGAGACATCGCGATTGTATA 689
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 548 TTCAACAACGTTACGCAGGGAATCAGGAGAGAATACAACTAGAGACATCGCGCTTGTATA 607
Query 690 AACAAGCTGGTGTTAATCCGTTGGCAGGTTGCTTACCAACTTTAGCAACCATACCAGTTT 749
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 608 AACAAGCTGGTGTAAATCCATTGGCAGGTTGCTTACCAACTTTAGCTACCATACCAGTTT 667
Query 750 GGATTGGTTTATACCAAGCTCTCTCTAACGTGGCCAACGAGGGATTGTTTACAGAAGGTT 809
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 668 GGATTGGTTTATACCAAGCTCTCTCCAACGTGGCCAACGAGGGATTGTTTACAGAAGGTT 727
Query 810 TCTTTTGGATTCCATCTCTGGGTGGACCAACATCTATAGCTGCTCGGCAGAGTGGATCCG 869
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 728 TCTTTTGGATTCCCTCTCTGGGTGGACCAACAACTATAGCTGCTCGGCAGAGTGGATCCG 787
Query 870 GCATTTCGTGGCTTTTTCCGTTTGTGGACGGGCATCCACCATTGGGATGGTATGACACTG 929
|||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 788 GCATATCATGGCTTTTTCCGTTTGTGGACGGGCATCCACCATTGGGATGGAATGACACTG 847
Query 930 TAGCTTATCTTGTTCTACCTGTTCTACTTATTGCCTCCCAGTATGTGTCAATGGAAATTA 989
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 848 CAGCTTATCTTGTTCTACCTGTTCTCCTTATTGCCTCCCAATATGTGTCAATGGAGATTA 907
Query 990 TGAAGCCTCCTCAAACTGATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTC 1049
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 908 TGAAGCCTCCTCAAACAGATGATCCTGCCCAAAAGAATACGCTTCTTGTTTTCAAGTTTC 967
Query 1050 TTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGGC 1109
|||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 968 TTCCACTCATGATCGGATACTTTGCATTGTCTGTCCCATCAGGATTATCTATCTACTGGT 1027
Query 1110 TCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTAGGTGGTGCAA 1169
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1028 TCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTTGGTGGTGCAA 1087
Query 1170 AGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGAGCAAAGAGATCTA 1229
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1088 AGCCTAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGGGCAAAGAGATCTA 1147
Query 1230 TTGCTCAGCCTGACGATGCTGGCGAAAGATTTAGACAATTAAAAGAGCAAGAGAAGCGCA 1289
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1148 TTGCTCAGCCTGACGATGCTGGCGAAAGATTTAGACAACTAAAAGAGCAAGAGAAGCGTA 1207
Query 1290 GCAAGAAGAACAAGGCGGTTGCGAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTG 1349
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1208 GCAAGAAGAACAAGGCTGTTGCAAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTG 1267
Query 1350 AATCAGAAGAAGGGTCTGATGATGAGGAAGAAGAGGCTCGTGAAGGAGCGTTAGCTTCGA 1409
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1268 AATCAGAAGAAGGGTCTGATGATGAGGAAGAAGAGGCTCGCGAAGGAGCATTAGCTTCAA 1327
Query 1410 GCACAACAAGCAAGCCGCTTCCTGAGGTTGGCCAACGAAGAAGCAAAAGATCGAAGCGGA 1469
|||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1328 GCACTACAAGCAAGCCGCTTCCTGACGTTGGGCAACGAAGAAGCAAAAGATCAAAGCGGA 1387
Query 1470 AACGCACTGTATAGAACCAAA 1490
|||||||||||||||||||||
Sbjct 1388 AACGCACTGTATAGAACCAAA 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5