BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28810.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481796 jgi|Araly1|481796|fgenesh2_kg.4__856__AT2G28810.1 2025 0.0
> Ahg481796 jgi|Araly1|481796|fgenesh2_kg.4__856__AT2G28810.1
Length=1334
Score = 2025 bits (1096), Expect = 0.0
Identities = 1261/1338 (94%), Gaps = 22/1338 (2%)
Strand=Plus/Plus
Query 1 TCAAACTTTATTAAAGAAAGAAGAACAAAGAGATAAAAGGGAAGAAGAACAATGGTTTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TCAAACTTTATTAAAGAAAGAAGAACAAAGAGATAAAAGGGAAGAAGAACTATGGTTTTC 60
Query 61 TCATCCGTCTCAAGCTTTTTAGATCCACCAATTAATTGGCCACAGTCTG-CGAATCCA-A 118
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 61 TCATCCGTCTCAAGCTTTTTAGATCCACCAATTAATTGGCCACAGTC-GAATAAT-CATC 118
Query 119 ATAACCATCCTCATCATCATCAGCTACAAGAAAATGGAAGTTTAGTTAGTGGCCACCACC 178
||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 119 CTAATCATCCTCATCATCATCAGCTACAAGAGAATGGAGGTTTAGTTAGTGGCCACCACC 178
Query 179 AAGTACTCTCTCACCACTTCCCACAAAACCCTAACCCTAACCACCACCATGTTGAGACAG 238
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 179 AAGTACTCTCTCACCACTTCCCACAAAACCCTAACCCTAACCATCACCATGTTGACACAG 238
Query 239 CAGCCGCCACCACCGTTGATCCGAGCAGTCTCAATGGCCAGGCGGCTGAGAGAGCGAGGC 298
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 239 CAGCCGCCGCCACCGTTGATCCTAGCAGTCTAAATGGCCAGGCGGCTGAGAGAGCGAGGC 298
Query 299 TAGCTAAGAACTCTCAGCCGCCAGAGGGAGCCCTAAAGTGTCCTCGATGTGACTCAGCCA 358
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 299 TAGCTAAGAACTCTCAGCCACCTGAGGGAGCCCTAAAGTGTCCTCGATGCGACTCAGCCA 358
Query 359 ATACCAAGTTCTGTTACTTCAACAACTACAACCTCACGCAGCCACGCCACTTCTGCAAAG 418
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 359 ATACCAAGTTCTGTTACTTCAACAACTACAACCTCACACAGCCACGTCACTTCTGCAAAG 418
Query 419 CTTGCCGTCGCTACTGGACACGTGGCGGTGCCTTGAGGAACGTACCTGTCGGTGGTGGCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTTGCCGTCGCTACTGGACACGTGGCGGTGCCTTGAGGAACGTACCTGTCGGTGGTGGCT 478
Query 479 GCCGGAGGAATAAGAAGGGTAAATCCGGAAATTCAAAGTCTTCCTCTTCCTCTCAGAACA 538
|||||||||| ||||||||||||||||| || || ||||||||||| || || |||||||
Sbjct 479 GCCGGAGGAACAAGAAGGGTAAATCCGGGAACTCCAAGTCTTCCTCCTCTTCACAGAACA 538
Query 539 AGCAGTCAACGTCTATGGTCAACGCTACAAGCCCTACTAA-TACTAGTAATGTCCAGCTC 597
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 539 AGCAGTCAACGTCTATGGTCAACGCTACAATTCCTAC-AACTACTAGTAATGTCCAGCTT 597
Query 598 CAAACAAATAGCCAATTCCCATTTTTGCCCACTCTACAAAACCTCACTCAACTTGGTGGT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAAACAAATAGCCAATTCCCATTTTTGCCCACTCTACAAAACCTCACTCAACTTGGTGGT 657
Query 658 ATTGGTTTAAACTTAGCCGCCATTAATGGAAATAATGGTGGAAATGGTAACACTAGCTCA 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 ATTGGTTTAAACTTAGCCGCCATTAATGGAAATAACGGTGGAAATGGTAACACTAGCTCA 717
Query 718 AGTTTCTTGAATGACTTAGGGTTTTTTCATGGTGGTAACACTTCAGGTCCGGTCATGGGT 777
|||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 718 AGTTTCTTGAATGAATTAGGGTTTTTTCATGGGGGTAACACTTCAGGTTCGGTCATGGGT 777
Query 778 AACAACAAC------GAGAATAACCTAATGACTTCTCTTGGATCATCCAGCCACTTTGCT 831
||||||||| ||||||||| | |||||||||||||||||| | ||||||||||||
Sbjct 778 AACAACAACAACAATGAGAATAACATCATGACTTCTCTTGGATCAGCAAGCCACTTTGCT 837
Query 832 TTGTTCGATCGAACCATGGGATTATATAATTTCCCTAACGAGGTAAATATGGGATTATCT 891
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 838 TTGTTCGATCGAACCATGGGATTATATAATTTCCCTAACGAGGGCAATATGGGATTATCT 897
Query 892 TCTATTGGTGCTACTAGGGTTTCTCAAACTGCTCAGGTGAAAATGGAGGACAACCATTTG 951
| |||||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 898 TTTATTGGGGGTACTAGGGTTTCTCAAACTGCTCAAGTGAAAATGGAAGACAACCATTTG 957
Query 952 GGTAATATAAGCCGCCCGGTTTCGGGGT-TGACATCTCCAGGGAATCAATCCAATCAATA 1010
|||| ||||| ||| ||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 958 GGTAGTATAAACCGACCGGTTTCGGG-TATGACATCTCCGGGGAATCAATCCAATCAATA 1016
Query 1011 TTGGACCGGTCAAGGTCTCCCCGGTTCTTCATCTAACGATCATCATCACCAGCATCTTAT 1070
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1017 TTGGACCGGTCAAAGTCTCCCTGGTTCTTCATCTAACGATCATCATCACCAGCACCTTAT 1076
Query 1071 GTGATTGTGTTTCTTAGCCGTCGGATTATTCATGGACCTTGTTAAAGATCCAATGCATAT 1130
|||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1077 GTGAGTGTGATTCTTAGCCGTCGGATCATTCATGGACCTTGTTAAAGATCCAATGCATAT 1136
Query 1131 GGAGAAACTAAAAGGTATATTAGAATCGGTTTGTTATAGTCAAT----GGGTGCATATAG 1186
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1137 GGAGAAACTAAAAGGTATATTAGAATCGGTTTGTTATAGTCAATATATGGGTGCATATAG 1196
Query 1187 AATCAGGTGTGACAAAGAATTAT-T-CGTATTGTGTGATTATGAACTTGTTAGATGTATG 1244
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1197 AATCAGGTGTGACAAAGAATTATATTCGTATTGTATGATTATGAACTTGTTAGATGTATG 1256
Query 1245 AGAG--TGTACTTGTCGAGTTTGTGTTTGTTCAATTCGTATTATTCACTCAAATTTTCAT 1302
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGAGAGTGTACTTGCCGAGTTTGTGTTTGTTCAATTCGTATTATTCACTCAAATTTTCAT 1316
Query 1303 AAAATAATACTAACTTAT 1320
||||||||||||||||||
Sbjct 1317 AAAATAATACTAACTTAT 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5