BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28830.1
Length=3218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320670 jgi|Araly1|320670|fgenesh1_pm.C_scaffold_4000727 2772 0.0
Ahg900654 jgi|Araly1|900654|Al_scaffold_0004_1304 619 3e-176
Ahg915009 jgi|Araly1|915009|Al_scaffold_0001_5263 383 5e-105
Ahg907857 jgi|Araly1|907857|Al_scaffold_0002_938 383 5e-105
> Ahg320670 jgi|Araly1|320670|fgenesh1_pm.C_scaffold_4000727
Length=1959
Score = 2772 bits (1501), Expect = 0.0
Identities = 1801/1945 (93%), Gaps = 24/1945 (1%)
Strand=Plus/Plus
Query 77 ATGGCGAAATCAGAGAAACACAAATTAGCTCAAACCTTAATCGATTCAATAAACGAGATC 136
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAAATCAGAGAAACACAAGTTAGCGCAAACCTTAATCGATTCAATAAACGAGATC 60
Query 137 GCTTCAATTTCCGATTC-CGTTACACCGATGAAGAAGCACTGCGCTAACCTCTCCCGGCG 195
|||||||||||||| || | || ||||||||||||||||||| |||||||| |||||
Sbjct 61 GCTTCAATTTCCGA-TCACCACACGCCGATGAAGAAGCACTGCGGAAACCTCTCTCGGCG 119
Query 196 ATTGTCGCTTCTTCTTCCTATGTTGGAAGAGATCAGAGACAATCAGGAATCATCTTCGGA 255
|||| ||||||| ||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 120 ATTGAAGCTTCTTATTCCTATGTTGGAAGAGATCAGAGACAATCAAGAATCGTCGTCGGA 179
Query 256 AGTAGTGAATGCTTTGTTATCTGTTAAGCAATCGCTTCTTCATGCTAAGGATTTGCTTTC 315
||| ||||| |||||||||||| ||||| |||||||| ||| |||||| |||||||||||
Sbjct 180 AGTTGTGAAGGCTTTGTTATCTCTTAAGGAATCGCTTGTTCCTGCTAAAGATTTGCTTTC 239
Query 316 TTTCGTTAGCCATGTTAGCAAAATTTACCTGGTGTTGGAGAGAGATCAAGTGATGGTGAA 375
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 240 TTTCGTTAGCCAAGTTAGCAAAATTTATCTGGTGTTGGAGAGAGACCAAGTGATGGTTAA 299
Query 376 ATTTCAGAAAGTGACTTCTCTATTGGAACAAGCTTTAAGTATAATCCCTTATGAGAATCT 435
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 GTTTCAGAAAGTGACGGCTCTATTGGAACAAGCTTTAAGTCGAATCCCTTATGAGAATCT 359
Query 436 GGAAATTTCAGATGAACTTAAAGAACAGGTGGAGCTTGTTTTAGTTCAGTTAAGAAGATC 495
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 360 TGAAATTTCAGATGAACTTAAAGAACAGGTTGAGCTTGTTTTAGTTCAGTTAAGAAGAGC 419
Query 496 GTTAGGAAAACGCGGTGGCGATGTGTATGATGATGAGTTGTATAAGGATGTTCTATCTCT 555
| |||||||| ||||| |||||||||||||||||||| || | |||| || |||||||
Sbjct 420 GATAGGAAAAGGCGGT---GATGTGTATGATGATGAGTTATACAGGGATCTTTTATCTCT 476
Query 556 TTATAGTGGTAGAGGTAGTGTAATGGAGTCTGATATGGTTAGGAGAGTGGCGGAGAAGCT 615
||| |||| | ||| ||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 477 TTACAGTGACATAGGCAGTGTAACGGAGTCTGACATGCTTAGGAGAGTGGCGGAGAAGCT 536
Query 616 TCAGTTGATGACTATAACTGACCTTACGCAAGAGTCATTGGCTTTACTTGACATGGTTAG 675
||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct 537 TCAGTTGATGACTATAACTGACCTTACACAAGAGTCGTTAGCTTTACTTGATATGGTTAG 596
Query 676 TTCTAGTGGTGGTGATGATCCTGGTGAAAGTTTTGAGAAGATGTCTATGGTTCTTAAGAA 735
|||||||||| | || |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 597 TTCTAGTGGT-G-GA-GATCCTGGTGAAAGCTTTGAGAAGATGTCGATGGTTCTCAAGAA 653
Query 736 GATTAAGGACTTTGTGCAAACTTATAATCCTAACTTGGATGATGCTCC-ATTGAGACTGA 794
|||||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||
Sbjct 654 GATTAAGGACTTTGTGCAAACTGATAATCCTAACTTAGATGATGCTCCGA-TGAGACTGA 712
Query 795 AATCATCGCTTCCGAAGTCGCGAGAT-GATGATCGA-GATATGCTAATTCCGCCTGAAGA 852
||||| |||||||||||| | |||| || |||| | ||||||| | | |||||||||||
Sbjct 713 AATCACCGCTTCCGAAGTTACAAGATGGA-GATC-AGGATATGCCAGTGCCGCCTGAAGA 770
Query 853 GTTCCGTTGTCCAATATCTCTAGAATTGATGACTGATCCAGTTATTGTTTCTTCAGGGCA 912
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 771 TTTCCGTTGTCCAATTTCTCTAGAATTGATGACGGATCCAGTTATTGTTTCTTCAGGGCA 830
Query 913 GACTTATGAACGTGAGTGCATTAAGAAGTGGCTTGAAGGAGGACACTTGACGTGTCCAAA 972
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 831 GACATATGAACGTGAGTGCATTAATAAGTGGCTTGAAGGAGGACACTTGACGTGTCCAAA 890
Query 973 GACGCAAGAAACGCTGACAAGCGATATCATGACACCAAACTATGTTCTAAGAAGCCTTAT 1032
||||||||| ||||||||||| |||| | | |||||||||||||||||||||||||||||
Sbjct 891 GACGCAAGAGACGCTGACAAGTGATACCGTCACACCAAACTATGTTCTAAGAAGCCTTAT 950
Query 1033 AGCTCAATGGTGTGAGTCCAATGGCATCGAACCTCCAAAGCGTCCCAAC-ATATCTCAAC 1091
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 951 AGCTCAATGGTGTGAGTCTAATGGCATCGAACCTCCAAAGCGTCCCAACAAT-TCTCAAC 1009
Query 1092 CGAGTAGTAAGGCCTCATCTTCGTCGTCAGCCCCTGATGATGAACATAACAAGATTGAAG 1151
|||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 1010 CGAGTAGTAAAGCCTCATCTTCCTCCTCAACCCCTGATGATGAACATAACAAGATTGAAG 1069
Query 1152 AACTTC-TACTTAAGCTCACATCGCAACAGCCTGAAGACCGAAGATCTGCTGCAGGAGAA 1210
||| || |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 1070 AAC-TCTTACTTAAGCTTACATCGCAACACCCTGAAGACCAAAGATCCGCTGCAGGAGAA 1128
Query 1211 ATCCGTCTTCTAGCAAAACAAAACAATCATAACCGAGTCGCCATTGCTGCCTCAGGCGCG 1270
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1129 ATCCGTCTTCTAGCAAAACAAAACAACCATAACCGAGTCGCCATTGCTGCATCAGGCGCG 1188
Query 1271 ATCCCTCTTCTGGTGAATCTCCTCACGATATCTAATGACTCTC-GGACTCAAGAACACGC 1329
|||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||||
Sbjct 1189 ATCCCTCTTCTGGTGAATCTCCTCACGATATCCAATGACT-ACAGAACTCAAGAACACGC 1247
Query 1330 TGTGACATCGATTCTTAACCTCTCGATATGTCAAGAGAACAAAGGGAA-GATTGTTTATT 1388
|||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1248 TGTGACATCGATTCTTAATCTCTCGATATGCCAAGAGAACAAA-GGAAGGATTGTTTATT 1306
Query 1389 CATCTGGAGCAGTTCCAGGTATTGTTCATGTGCTTCAGAAAGGTAGCATGGAAGCTAGAG 1448
||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 1307 CATGTGGAGCGGTTCCAGGTATTGTTCATGTGCTCCAGAGAGGCAGCATGGAAGCTAGAG 1366
Query 1449 AAAACGCAGCAGCTACACTTTTCAGCCTCTCGGTTATAGACGAGAACAAAGTGACAATAG 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AAAACGCAGCAGCTACACTTTTCAGCCTCTCGGTTATAGACGAGAACAAAGTGACAATAG 1426
Query 1509 GTGCCGCAGGAGCGATCCCGCCTCTTGTGACCTTGCTGAGCGAAGGATCACAGAGAGGCA 1568
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1427 GTGCCGCAGGAGCGATCCCGCCTCTTGTGACCTTGCTGAGCGAAGGATCACAAAGAGGCA 1486
Query 1569 AAAAAGACGCGGCAACTGCTCTGTTTAATCTCTGCATATTTCAAGGAAACAAAGGAAAAG 1628
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1487 AAAAAGACGCGGCGACTGCTCTGTTCAATCTCTGCATATTTCAAGGGAACAAAGGAAAAG 1546
Query 1629 CTGTGAGAGCCGGTTTAGTTCCCGTGCTAATGAGGTTACTAACAGAACCCGAAAGCGGAA 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CTGTGAGAGCCGGTTTAGTTCCCGTGCTAATGAGGTTACTAACAGAACCCGAAAGCGGAA 1606
Query 1689 TGGTTGATGAATCACTCTCGATATTAGCCATACTATCGAGTCATCCGGACGGGAAATCAG 1748
||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |||
Sbjct 1607 TGGTTGATGAATCACTCGCTATATTAGCCATACTATCAAGTCATCCGGACGGGAAAACAG 1666
Query 1749 AGGTTGGAGCCGCTGATGCAGTTCCAGTTCTGGTAGATTTTATAAGAAGCGGGTCACCGC 1808
||||| ||| ||||| ||||||| ||| ||||||||||||| |||||||| |||||||
Sbjct 1667 TGGTTGCTGCCTCTGATCCAGTTCCGGTTATGGTAGATTTTATCAGAAGCGGATCACCGC 1726
Query 1809 GGAACAAAGAAAACTCAGCTGCGGTATTAGTGCACTTGTGTTCATGGAATCAGCAACATT 1868
| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1727 GAAACAAAGAAAACGCAGCTGCAGTATTGGTGCACTTGTGTTCATGGAATCAGCAGCATT 1786
Query 1869 TGATTGAAGCTCAGAAATTAGGGATTATG-GATCTTTTAATAGAAATGGCTGAGAATGGT 1927
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1787 TGATTGAAGCTCAGAAATTAGGGATTATGAG-TCTTTTAATAGAAATGGCTGAGAATGGT 1845
Query 1928 ACTGACAGAGGAAAACGCAAAGCGGCACAGTTACTTAACCGCTTTAGCCGTTTTAACGAC 1987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 ACTGACAGAGGAAAACGCAAAGCGGCACAGTTACTTAACCGCTTTAGCCGTTTTAACGAC 1905
Query 1988 CAGCAGAAACAACACTCTGGTTTAG 2012
|||||||||||||| || |||||||
Sbjct 1906 CAGCAGAAACAACAGTCCGGTTTAG 1930
> Ahg900654 jgi|Araly1|900654|Al_scaffold_0004_1304
Length=873
Score = 619 bits (335), Expect = 3e-176
Identities = 441/491 (90%), Gaps = 12/491 (2%)
Strand=Plus/Plus
Query 2475 AGACTTCcaacaacgaaaagaaacaacaaaaacaaaaaagttccgtcaacgaaaagaaac 2534
||| |||| || ||||||||||| | ||||| |||| | |||| ||| |||||||||||
Sbjct 395 AGAGTTCCGTCAGCGAAAAGAAAC-A-AAAAA-AAAAGACTTCCATCAGCGAAAAGAAAC 451
Query 2535 caaaaaaaaaaaaaaaGAGTTCCATCAGCGATATCCCAAGAAGAACAAAGTTTCAGAAAC 2594
| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 452 C------AAAAAAAAAGAGTTCCGTCAGCGATATCCCTAGAAGAACAAAGTTTCAGAAAC 505
Query 2595 ATCATCGAGGAAGAATTAATAAAGGAGTATCTTCTCAGGGGTATATTTGTAGTAGATATG 2654
||||||||||||||| | ||||||| ||||| |||| ||| |||||| | |||||||||
Sbjct 506 ATCATCGAGGAAGAA-T--TAAAGGAATATCTACTCAAGGGAATATTTTTGGTAGATATG 562
Query 2655 CTCTTCAAACACTTGAACCAGCTTGGATCACTTCTAGACAAATAGAAGCAGGACGACGAG 2714
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 563 CTCTTCAAACACTTGAACCCGCTTGGATCACATCTAGACAAATAGAAGCAGGGCGACGAG 622
Query 2715 CAATGACACGAAATATAGGACGTGGTTTAACTGTTCGAGTTCATATATTTGCAGACAAAC 2774
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 623 CAATGACACGAAATATAGGACGTGGTTTAAAAGTTCGAGTTCATATATTTGCAGACAAAC 682
Query 2775 CAGTTACAGTAAGACCTCCTGAAACGCGTATGGGTCGTGGGAAAGGAGCTCCAGCGTTTT 2834
|||||||||||||||| || |||||||| ||||||||||||||||||| |||||||||||
Sbjct 683 CAGTTACAGTAAGACCCCCCGAAACGCGAATGGGTCGTGGGAAAGGAGATCCAGCGTTTT 742
Query 2835 GGGTAGCTGTGGTTAAACCAGGTAAAATCATTTATGAAATGGGTGGTGTTTCCGAAAAAG 2894
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 743 GGGTAGCTGTGGTTAAACCAGGTAAAATCATTTATGAAATGGGTGGTGTATCCGAAAAAA 802
Query 2895 TAGCTAGAGAAGCTATTTCTATAGCCGCATCAAAGTTGCCTGCAAAAACCAAATTCATCA 2954
|||| |||||||||||| | || || |||||||| |||||| ||||||||||||||| |
Sbjct 803 TAGCCAGAGAAGCTATTACAATTGCGGCATCAAAATTGCCTATAAAAACCAAATTCATTA 862
Query 2955 TTTCTAAATAA 2965
||| | |||||
Sbjct 863 TTTTTGAATAA 873
Score = 215 bits (116), Expect = 2e-54
Identities = 169/193 (88%), Gaps = 9/193 (5%)
Strand=Plus/Plus
Query 2090 ATGCAGAGATTCATGTTTAGCCGCGTCGTGGAACATCAACGTCAGATAAGCCGAGGATTT 2149
|||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 1 ATGCAGAGATTCTTGTTTAGCCGCGTCGTGGAAAATCAACATCAGATAAGCCGAAGATTT 60
Query 2150 CTCAGTCTTGTACCATCTCTATCTCCCACTGCTGTTCCTGCTATGTCTCGTTTCTTTCCG 2209
|||| ||| || ||||||||||| |||| | ||||||||| |||||||||||||||||
Sbjct 61 CTCAATCTAGTTCCATCTCTATC-ACCAC--CAGTTCCTGCTCTGTCTCGTTTCTTTCCG 117
Query 2210 AAGATTACTGCTTCTGATTCCACTTCCTCGATTCCC-TT-TT--T-T-ACTCCAGACTTC 2263
||||||||||||||||||||||||||||| ||||| || || | | |||| |||| |
Sbjct 118 AAGATTACTGCTTCTGATTCCACTTCCTCTCTTCCCGTTGTTAGTGTTACTCTTGACTCC 177
Query 2264 ATCAATCCCAAGA 2276
|||||||||||||
Sbjct 178 ATCAATCCCAAGA 190
> Ahg915009 jgi|Araly1|915009|Al_scaffold_0001_5263
Length=408
Score = 383 bits (207), Expect = 5e-105
Identities = 343/406 (84%), Gaps = 19/406 (5%)
Strand=Plus/Plus
Query 2570 CCAAGAAGAA-CAAAGTTTCAG-AAACATCATCGAGGAAGAATTAATAAAGGAGTATCTT 2627
|||| ||||| || | |||| | ||||| ||||||||||| | | | |||||| ||||||
Sbjct 10 CCAAAAAGAACCAGA-TTTC-GTAAACAACATCGAGGAAG-ACT-A-AAAGGAATATCTT 64
Query 2628 CTCAG-GGG--T-ATATTTG---TAGTAGATATGCTCTTCAAACACTTGAACCAGCTTGG 2680
||| | ||| | |||||| | | |||||||||||||||||||||||||| ||||||
Sbjct 65 CTC-GTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGG 123
Query 2681 ATCACTTCTAGACAAATAGAAGCAGGACGACGAGCAATGACACGAAATATAGGACGTGGT 2740
||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 124 ATCACATCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGTGGT 183
Query 2741 TTAACTGTTCGAGTTCATATATTTGCAGACAAACCAGTTACAGTAAGACCTCCTGAAACG 2800
|| || | || | ||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 184 GGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAAACG 243
Query 2801 CGTATGGG-TCGTGGGAAAGGAGCTCCAGCGTTTTGGGTAGCTGTGGTTAAACCAGGTAA 2859
|||||||| || |||||||||| | || | || |||||||||||||||||||||||||||
Sbjct 244 CGTATGGGTTC-TGGGAAAGGATCCCCCGAGTATTGGGTAGCTGTGGTTAAACCAGGTAA 302
Query 2860 AATCATTTATGAAATGGGTGGTGTTTCCGAAAA-AGTAGCTAGAGAAGCTATTTCTATAG 2918
|||| ||||||||||||||||||| ||||||| | |||| ||| |||||||||| ||||
Sbjct 303 AATCCTTTATGAAATGGGTGGTGTACCCGAAAATA-TAGCCAGAAAAGCTATTTCAATAG 361
Query 2919 CCGCATCAAAGTTGCCTGCAAAAACCAAATTCATCATTTCTAAATA 2964
| |||||||| ||||| ||||||| ||||||| |||||| ||||
Sbjct 362 CGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATA 407
> Ahg907857 jgi|Araly1|907857|Al_scaffold_0002_938
Length=408
Score = 383 bits (207), Expect = 5e-105
Identities = 343/406 (84%), Gaps = 19/406 (5%)
Strand=Plus/Plus
Query 2570 CCAAGAAGAA-CAAAGTTTCAG-AAACATCATCGAGGAAGAATTAATAAAGGAGTATCTT 2627
|||| ||||| || | |||| | ||||| ||||||||||| | | | |||||| ||||||
Sbjct 10 CCAAAAAGAACCAGA-TTTC-GTAAACAACATCGAGGAAG-ACT-A-AAAGGAATATCTT 64
Query 2628 CTCAG-GGG--T-ATATTTG---TAGTAGATATGCTCTTCAAACACTTGAACCAGCTTGG 2680
||| | ||| | |||||| | | |||||||||||||||||||||||||| ||||||
Sbjct 65 CTC-GTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGG 123
Query 2681 ATCACTTCTAGACAAATAGAAGCAGGACGACGAGCAATGACACGAAATATAGGACGTGGT 2740
||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 124 ATCACATCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGTGGT 183
Query 2741 TTAACTGTTCGAGTTCATATATTTGCAGACAAACCAGTTACAGTAAGACCTCCTGAAACG 2800
|| || | || | ||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 184 GGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAAACG 243
Query 2801 CGTATGGG-TCGTGGGAAAGGAGCTCCAGCGTTTTGGGTAGCTGTGGTTAAACCAGGTAA 2859
|||||||| || |||||||||| | || | || |||||||||||||||||||||||||||
Sbjct 244 CGTATGGGTTC-TGGGAAAGGATCCCCCGAGTATTGGGTAGCTGTGGTTAAACCAGGTAA 302
Query 2860 AATCATTTATGAAATGGGTGGTGTTTCCGAAAA-AGTAGCTAGAGAAGCTATTTCTATAG 2918
|||| ||||||||||||||||||| ||||||| | |||| ||| |||||||||| ||||
Sbjct 303 AATCCTTTATGAAATGGGTGGTGTACCCGAAAATA-TAGCCAGAAAAGCTATTTCAATAG 361
Query 2919 CCGCATCAAAGTTGCCTGCAAAAACCAAATTCATCATTTCTAAATA 2964
| |||||||| ||||| ||||||| ||||||| |||||| ||||
Sbjct 362 CGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATA 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121584062040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5