BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28850.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933351 jgi|Araly1|933351|scaffold_401339.1 2252 0.0
Ahg934047 jgi|Araly1|934047|scaffold_402035.1 1079 0.0
> Ahg933351 jgi|Araly1|933351|scaffold_401339.1
Length=1530
Score = 2252 bits (1219), Expect = 0.0
Identities = 1398/1485 (94%), Gaps = 10/1485 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCCTCAGTTTCCCTATTTGCTTCTCTTACACCGTACTTAGTCTCAGCATTACTT 60
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 21 ATGGTTTCCTCAATTTCCCTATTTGCCTCTCTTGCACCGTACTTAGTCTCAGCATTACTT 80
Query 61 CTATTCCTTCTGCTCGAGCAACTCTTTTACCGTCTCAAGAAACGTAACCTCCCTGGCCCT 120
||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |||
Sbjct 81 CTATTCCTTCTGCTCGAGCAACTCTCTTACCTTGTCAAGAAACGTAACCTCCCTGGTCCT 140
Query 121 CTCTTTGTCTTTCCGATAATTGGAAATGTTGTTGCACTTATTCGCGACCCAACTTCCTTC 180
||||| ||| ||||||| |||||||| |||||||||||| | || |||||||||||||||
Sbjct 141 CTCTTCGTCCTTCCGATCATTGGAAACGTTGTTGCACTTGTCCGTGACCCAACTTCCTTC 200
Query 181 TGGGACAAGCAATCCGCGATGGCGGACACGTCCGTTGGCCTCTCCGTCAACTACCTTATT 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 201 TGGGACAAGCAATCCGCGATGGCGGACACTTCCGTTGGCCTCTCCGTCAACTACCTTATT 260
Query 241 GGAAAATTCATCATATACATTAAAGACGCAGAGCTCTCCAATAAAGTCTTCTCCAACATT 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 261 GGAAAATTCATCATATACATTAAAGACGCAGAGCTCTCCAATAAAATCTTCTCCAACATT 320
Query 301 CGTCCCGATGCTTTCCAACTTGTTGGACATCCATTCGGAAAGAAGCTCTTCGGTGATCAT 360
||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 321 CGTCCTGATGCTTTCCAACTTGTTGGACATCCATTCAGAAAAAAGCTCTTCGGTGATCAC 380
Query 361 AGCCTTATCTTTATGTTTGGCGAGAATCACAAATCCGTTCGTCGTCAAGTCGCTCCTAAC 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 381 AGCCTTATCTTTATGTTTGGCGAGGATCACAAATCCGTTCGTCGTCAAGTCGCTCCTAAC 440
Query 421 TTCACCCG-CAAGCCACTCTCTGCTTATTCTTCCCTCCAGCAAATAGTTATCCTCCGTCA 479
|||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 441 TTCACCCGACAA-CCACTCTCTGCCTATTCTTCCCTCGAGCAAATAGTTATCCTCCGTCA 499
Query 480 TTTACGGCAGTGGGAGGAAAGTTTTTCCAGTGGATCTCGTCCGGTTTCGATGAGACAACT 539
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 500 TTTACGGCAGTGGGAGGAATGTTTTTCCAGTGGATCTCGGCCGGTTTCGATGAGACAACT 559
Query 540 CATCCGTGAACTCAACCTCGAGACTTCTCAGACGGTTTTTGTTGGACCATATCTCGACAA 599
||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||| || |
Sbjct 560 AATCCGTGAACTAAACCTCGAGACTTCCCAGACCGTTTTTGTTGGACCATACCTCAACGA 619
Query 600 GGAAGTCAAGAACACGATCCGTGA-TGATTACAATGTGTTCAATCCTGGAACAATGGCGC 658
|||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
Sbjct 620 GGAAGTCAAGAACACGATCCGT-ACTGATTACAATGTGTTCAATCCCGGAACAATGGCCC 678
Query 659 TCCCGATCGACCTCCCTGGCTTCACGTTCGGGGAGGCTCGTCGGGCGGTATCGAGGCTAG 718
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 679 TCCCGATCGACCTCCCTGGCTTCACGTTCGGCGAGGCTCGTCGGGCGGTATCGAGACTAG 738
Query 719 TGAATACAATGTCTCTTTGCGTGAG-AAAATCAAAAGAAAAGATGGCCGCAGGAGAGAAT 777
||||||||||| || ||||||| || ||||||||||| ||||||||| ||||||||||||
Sbjct 739 TGAATACAATGGCTGTTTGCGT-AGTAAAATCAAAAGCAAAGATGGCTGCAGGAGAGAAT 797
Query 778 CCAACATGTTTAGTCGATTTCTGGACGCATTCGATCGTAGCTGAGAGTCCTCCACCGCCT 837
||||||||| |||||||||||||||||||||||||| ||| |||| ||| |||||||||
Sbjct 798 CCAACATGTCTAGTCGATTTCTGGACGCATTCGATCATAGGAGAGAATCCGCCACCGCCT 857
Query 838 CACTCCAAAGACGAAGAGATTAGTTGTGTGCTCGTTGATTTTCTGTTTGCCTCACAGGAC 897
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 858 CACTCCAAAGACGAAGAGATCAGTTGTGTGCTCGTTGATTTTCTGTTTGCCTCACAGGAC 917
Query 898 GCGTCTACGTCATCACTCCTCTGGGCAGTGGTGCTGCTTGAGTCCGAGCCAGAAGTGCTA 957
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 918 GCGTCTACATCATCACTCCTCTGGGCAGTGGTGCTACTTGAGTCGGAGCCAGAAGTGCTA 977
Query 958 AGAAGAGTGAGGGAGGACGTTGCAAGATTTTGGTCGCCTGAGTCCAAGGAGTCGATCACA 1017
|||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||| |||
Sbjct 978 AGAAGAGTAAGGGAGGAAGTCGCAAGAGTTTGGTCGCCTGAGTCCAACGAGTTGATAACA 1037
Query 1018 GCCGATCAGCTCGCGGAGATGAAGTACATTCGGGCTGTGGCGCGTGAGGTC-TTAAGATA 1076
|| ||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||
Sbjct 1038 GCTGATCAGCTCGCGGAGATGAAGTACACTCGGTCTGTGGCGCGTGAGGTCCTTA-GATA 1096
Query 1077 CCGACCACCAGCAAGTATGGTCCCACATGTTGCTGTTAGTGACTTCCGTCTCACGGAATC 1136
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1097 CCGACCACCAGGAATTATGGTCCCACATGTTGCTGTTAGTGACTTCCATCTCACGGAATC 1156
Query 1137 GTACACAATCCCAAAAGGTACAATTGTGTTTCCTTCCCTTTTTGACGCCTCTTTTCAAGG 1196
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1157 GTACACAATCCCAAAAGGTACAATTGTCTTTCCTTCCCTTTTCGACGCCTCGTTTCAAGG 1216
Query 1197 GTTTACTGAACCAGACCGGTTCGATCCTGACCGGTTTAGCGAGACAAGGCAAGAGGATGA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1217 GTTTACTGAACCAGACCGGTTCGATCCTGACCGGTTTAGCGAGACAAGGCAAGAGGATCA 1276
Query 1257 GGTGTTCAAACGCAATTTCCTAACTTTTGGAATTGGCTCGCACCAATGCGTGGGCCAACG 1316
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1277 GGTGTTCAAACGCAATTTCCTAACTTTTGGAATTGGCTCGCACCAGTGCGTAGGCCAACG 1336
Query 1317 TTACGCGCTGAACCACCTCGTGCTCTTCATTGCCATGTTCTCCTCGATGTTTGATTTCAA 1376
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1337 TTACGCGATGAACCACCTCGTGCTCTTCATTGCCATGTTCTCCTCCATGTTTGATTTCAA 1396
Query 1377 GAGGGTCCGATCAGATGGTTGCGATGAGATTGTGCATAT-CCCCACGATGTCGCCAAAGG 1435
||||||||||||||||||||| ||||||||||||||| | |||||| |||||||| ||||
Sbjct 1397 GAGGGTCCGATCAGATGGTTGTGATGAGATTGTGCAT-TGCCCCACCATGTCGCCTAAGG 1455
Query 1436 ACGGGTGCACGGTGTTCTTGTCTAGCCGCCTCGTTACCTCTCCTT 1480
|||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1456 ACGGGTGCACAGTGTTCTTGTCTAGCCGTGTCGTTACCTCTCCTT 1500
> Ahg934047 jgi|Araly1|934047|scaffold_402035.1
Length=1545
Score = 1079 bits (584), Expect = 0.0
Identities = 1209/1506 (80%), Gaps = 62/1506 (4%)
Strand=Plus/Plus
Query 1 ATGG-TTTCCTCAGTTTCCCTATTTGCTTCTCTTACACCGTACTTAGTCTCAGCATTACT 59
|||| ||| |||||||||| |||||| ||||| |||| ||||||||||| |||||
Sbjct 24 ATGGCTTT-CTCAGTTTCCAGATTTGCCTCTCTCGCACCATACTTAGTCTCTTTGTTACT 82
Query 60 TCTATTCCTTCTGCTCGAGCAACTCTTTTACCGTCTCAAGAAACGTAACCTCCCTGGCCC 119
||| |||||||| |||||||| ||| ||||| | |||||||||||||||||||||||||
Sbjct 83 TCTCTTCCTTCTAATCGAGCAAATCTCTTACCTTGTCAAGAAACGTAACCTCCCTGGCCC 142
Query 120 TCTCTTTGTCTTTCCGATAATTGGAAATGTTGTTGCACTTATTCGCGACCCAACTTCCTT 179
|||||||||| |||||| || ||||| | ||| |||| |||| ||||||||||||||
Sbjct 143 TCTCTTTGTCCCTCCGATCATCGGAAACGCCGTTTCACTCGTTCGTGACCCAACTTCCTT 202
Query 180 CTGGGACAAGCAATCCGCGATGGCGGACACGTCC-GTTGGCCTCTCCGTCAACTACCTTA 238
|||| ||||||||||||| | ||||| ||| ||| || |||||||| | ||||||||| |
Sbjct 203 CTGGTACAAGCAATCCGCAACGGCGGGCACTTCCCGT-GGCCTCTCTGCCAACTACCTCA 261
Query 239 TTGGAAAATTCATCATATACATTAAAGACGCAGAGCTCTCCAAT-AAAGTCTTCTCCAAC 297
| |||||||||||||| ||||| | |||| | ||||| ||| || ||| |||||||||||
Sbjct 262 TCGGAAAATTCATCATCTACATCAGAGACACTGAGCTTTCCCATCAAA-TCTTCTCCAAC 320
Query 298 ATTCGTCCCGATGC-TTTCCAACTTGTTGGACATCCATTCGG-AAAGAAGCTCTTCGGTG 355
| ||| | |||| |||| | | | | |||||||| || || ||| || |||||||| |
Sbjct 321 GTGGGTCTCAATGCATTTC-ACCCTCTCGGACATCCTTTTGGCAAACAA-CTCTTCGGCG 378
Query 356 ATCATAGCCTTATCTT-TATGTTTGGCGAGAATCACAAATCCGTTCGTCGTCAAGTCGCT 414
|||||||||| |||| | |||| || ||| |||||||| ||||||| ||||| | |||
Sbjct 379 ATCATAGCCTAATCTACT-TGTTCGGTGAGGATCACAAAACCGTTCGCCGTCACCTTGCT 437
Query 415 CCTAACTTCACCCGCAAGCCACTCTCTGCTTATTCTTCCCTCCAGCAAATAGTTATCCTC 474
|| |||||||||| |||| ||||||| |||| ||| || || ||||||||||| ||
Sbjct 438 CCCAACTTCACCCCCAAGGCACTCTCCACTTACTCTGATCTTCAACAAATAGTTATGTTC 497
Query 475 CGTCATTTACGGCAGTGGGAGGAAAGTTTTTCCAGTGGATCTC-GTCCGGTTTCGATGAG 533
|||||| |||| ||||||||||||||||| || | ||| || | |||||||| ||| |
Sbjct 498 CGTCATCTACGACAGTGGGAGGAAAGTTTCTCTGGCGGAACTAAG-CCGGTTTCTATGCG 556
Query 534 ACAACTCATCCGTGAACTCAACCTCGAGACTTCTCAGACGGTTTTTGTTGGACCATATCT 593
| | || ||||||||||||| || ||||||||||| || ||||| |||||||| || ||
Sbjct 557 AGATCTTGTCCGTGAACTCAATCTTGAGACTTCTCAAACTGTTTTCGTTGGACCCTACCT 616
Query 594 CGACAAGGAAGTCAAGAA-CACGATCCGTGA-TGATTACAATGTGTTCAATCCTGGAACA 651
||||| |||| | |||| |||| ||||| | |||||||||| |||||||| ||| |
Sbjct 617 TGACAAAGAAG-CTAGAAACACGTTCCGT-ACTGATTACAATCTGTTCAATGTTGGTTCC 674
Query 652 ATGGCGCTCCCGATCGACCTCCCTGGCTTCACGTTCGGGGAGGCTCGTCGGGCGGT-ATC 710
||||||||||||||| |||| |||||||| ||||| | ||||||| |||||||| ||
Sbjct 675 ATGGCGCTCCCGATCAACCTACCTGGCTTTGCGTTCAGCAAGGCTCGCCGGGCGGTGAT- 733
Query 711 GAGGCTAGTGAATACAATGTC--TCTTTGCGTGAGAAAATCAAAAGAAAAGATGGCCG-C 767
|| || | | | ||| | || ||| ||| | ||||||| ||||| |||||||| | |
Sbjct 734 GAACCTTGAGGAGACACTCTCCGTCTGTGCC-G-GAAAATCCAAAGAGAAGATGGC-GAC 790
Query 768 AGGAGAGAATCCAACATGTTTAGTCGATTTCTGGACGCATTCGATCGT-A-GCTGA--GA 823
||| ||| | |||| ||| || |||||||||||| |||| | ||||| | | || ||
Sbjct 791 AGGGGAGGAGCCAAAATGCCTAATCGATTTCTGGATGCATGCAATCGTCACGGAGATAGA 850
Query 824 ----G-T---CCTCCACCGCCTCACTCCAAAGACGAAG-AGATTAGTTGTGTGCTCGTTG 874
| | || ||||| | ||||||| ||||||||| | || || || ||||| |||
Sbjct 851 ATCTGGTAATCCGCCACCACTTCACTCCGAAGACGAAGCA-ATCGGTGGTTTGCTCTTTG 909
Query 875 ATTTTCTGTTTGCCT-CACAGGACGCGTCTACGTCATCACTCCTCTGGGCAGTGGTGCTG 933
||||||| || || | |||| |||||||| || ||||||||||| ||||| |||| | |
Sbjct 910 ATTTTCTCTTCGC-TGCACAAGACGCGTCGACATCATCACTCCTTTGGGCGGTGGCGTTT 968
Query 934 CTTGAGTCCGAGCCAGAAGTGCTAAG-AAGAGTGAGGGAGGACGTTGC-AAGATTTTGGT 991
||||| || | || |||||||| || || |||||||||||| || || ||||||| |||
Sbjct 969 CTTGAATCTAATCCGGAAGTGCTTAGCAA-AGTGAGGGAGGAAGTGGCCAAGATTT-GGT 1026
Query 992 CGCCTGAGTCCAAG-GAG-TCGATCACAGCCGATCAGCTCGCGGAGATGAAGTACATTCG 1049
||||||||||| | ||| | ||||| |||||||||||||||||||||||||||| ||
Sbjct 1027 CGCCTGAGTCCG-GCGAGCTT-ATCACGGCCGATCAGCTCGCGGAGATGAAGTACACGCG 1084
Query 1050 GGCTGTGGCGCGTGAGGTCTTAAGATACCGACCACCAGCAAGTATGGTCCCACATGTTGC 1109
|| || || |||||| | |||||||||||||| |||| |||||||| || ||||
Sbjct 1085 CGCCACAGCTCGCGAGGTCGTGAGATACCGACCACCGGCAACAATGGTCCCGCACATTGC 1144
Query 1110 TGTTAGTGACTTCC-GTCTCACGGAATCGTACACAATCCCAAAAGGTACAATTGTGTTTC 1168
| || ||| |||| | ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1145 TACTAATGATTTCCCG-CTCACGGAATCGTACACAATCCCAAAAGGTACAATCGTTTTTC 1203
Query 1169 CTTCCCTTTTTGACGCCTCTTTTCAAGGGTTTACTGAACCAGA-CCGGTTCGATCCTGAC 1227
| || |||| ||| | || || ||||||||||||||||| || |||||||||||| |||
Sbjct 1204 CCTCGGTTTTCGACTCATCGTTCCAAGGGTTTACTGAACC-GAACCGGTTCGATCCGGAC 1262
Query 1228 CGGTTTAGCGAGACAAGGCAAGAGGATGAGGTGTTCAAACGCAATTTCCTAACTTTTGGA 1287
||||||||||||||||||||||||||| | || ||||||||||| | |||| ||||||||
Sbjct 1263 CGGTTTAGCGAGACAAGGCAAGAGGATCAAGTATTCAAACGCAACTACCTAGCTTTTGGA 1322
Query 1288 ATTGGCT-CGCACCAATGCGTGGGCCAACGTTACGCGCTGAACCACCTCGTGCTCTTCAT 1346
| || | ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1323 -TGGGGTGCGCACCAGTGCGTAGGCCAGCGTTACGCGCTGAACCACCTCGTTCTCTTCAT 1381
Query 1347 TGCCATGTTCTCCTCGATGTTTGATTTCAAGAGGGTCCGATCAGATGGTTGCGATGAGAT 1406
|| ||||||||||| ||||||||||||||||| | | | | || || |||||||| ||
Sbjct 1382 CGCAATGTTCTCCTCTTTGTTTGATTTCAAGAGGCTTCAAACTGACGGCTGCGATGACAT 1441
Query 1407 TGTGCATA-T-CCCCACGATGTCGCCAAAGGACGGGTGCACGGTGTTCTTGTCTA-GCCG 1463
| ||| | ||||||||| ||||| ||||||||||||||||| |||||||||| || |
Sbjct 1442 CAT--ATACTGCCCCACGATATCGCCGAAGGACGGGTGCACGGTCTTCTTGTCTAAGC-G 1498
Query 1464 CCTCGT 1469
| ||||
Sbjct 1499 CGTCGT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5