BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28870.1

Length=660
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481802 jgi|Araly1|481802|fgenesh2_kg.4__862__AT2G28870.1          566    9e-161


> Ahg481802 jgi|Araly1|481802|fgenesh2_kg.4__862__AT2G28870.1
Length=563

 Score =  566 bits (306),  Expect = 9e-161
 Identities = 510/598 (85%), Gaps = 55/598 (9%)
 Strand=Plus/Plus

Query  83   ATGGGTTTCTCCGACGCTGGAATTTACCTCTCCGACCCAAACAATCTCTGCCAAACCGAA  142
            ||||||||||| ||||| ||||||||| ||||||||| ||||||||||||| |||| |||
Sbjct  1    ATGGGTTTCTCGGACGCCGGAATTTACATCTCCGACCAAAACAATCTCTGCGAAACGGAA  60

Query  143  CTAGGTTTCTTTCATGAACCATCTCTAGGGTTTTCAGACCAGAGCGATC-CACA-----A  196
            ||||| |||||||||||||| ||||||||| ||||||||| ||||| || ||||     |
Sbjct  61   CTAGGGTTCTTTCATGAACCCTCTCTAGGGGTTTCAGACCGGAGCGTTCACACACCTCCA  120

Query  197  -AAC--GAGTTC-CACATCACTCCTCCTATATATCAAGAATTACAAG------ATCAGGA  246
             |||  ||| || ||||||| |||||||| |||||||||||||||||      |||| ||
Sbjct  121  CAACAAGAG-TCTCACATCATTCCTCCTACATATCAAGAATTACAAGACCAACATCAAGA  179

Query  247  TCTTGAACCTAAATCCCAAGAGACGAA-TAATTGCTCACGCAAAGAAGGAGCAACCGTCa  305
            ||||||| |||||||||||||||| || |||||||||| | ||||||||||||| | || 
Sbjct  180  TCTTGAAACTAAATCCCAAGAGAC-AAGTAATTGCTCATGTAAAGAAGGAGCAAACTTC-  237

Query  306  agaaagaagaagaagaagaagaCGATTATTGTAAAACTCCGACTCGTTCAGACCAGATTC  365
               ||| || |||||||| | |  ||||||| || |||||||| ||||| ||||||||||
Sbjct  238  ---AAG-AG-AGAAGAAG-A-A-TATTATTGCAAGACTCCGACACGTTCCGACCAGATTC  289

Query  366  TCTCGGCGATGCCAAGAATTTGTCCACCGGCGCCTAGGAAACCTAAAAGAGTCCCGTCGA  425
            || |||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  290  TCCCGGCAATACCAAGAATTTGTCCACCGGCGCCGAGGAAACCTAAAAGAGTCCCGTCGA  349

Query  426  GAAGCCTTAAGGTTAGAAATTCATATAGAAGCAAGAGAATGATCATTCTAAATGTTTCTA  485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  350  GAAGCCTTAAGGTTAGAAATTCATATAGAAGCAAGAGAATGATCATTCTAAATGTTTCTA  409

Query  486  GAGAGATTGATTGTTTGTTTAATCCAACATCACTATGTAACAAAATTAAGAAAGCCAGAT  545
            ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct  410  GAGAGATTGATTGTTTGTTTAATCCAACATCTCTATGTAACAAAGTTAAGAAAGCCAGAT  469

Query  546  ACATCTAATGTTTTGTACGTACTGTATTTGTATAACGTAGCAACCTAATAACCAAATTGT  605
            |||| |   || |   |   || |||   |     | || |  | |||||||||||||||
Sbjct  470  ACAT-T---GTAT---A---AC-GTA---G-----C-TA-C--C-TAATAACCAAATTGT  505

Query  606  AATACACTACGACTTTACATAATGTAGT---GAGAAACTATCTATTTCACTTTTATTT  660
            |||||||||||| |||||||||||||||   ||||||||||||||||||||||| |||
Sbjct  506  AATACACTACGAGTTTACATAATGTAGTAATGAGAAACTATCTATTTCACTTTTGTTT  563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24208052295


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5