BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28890.1
Length=2341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481804 jgi|Araly1|481804|fgenesh2_kg.4__864__AT2G28890.1 3350 0.0
Ahg470787 jgi|Araly1|470787|fgenesh2_kg.1__741__AT1G07630.1 824 0.0
> Ahg481804 jgi|Araly1|481804|fgenesh2_kg.4__864__AT2G28890.1
Length=2247
Score = 3350 bits (1814), Expect = 0.0
Identities = 2082/2205 (94%), Gaps = 44/2205 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaTCATTTTCCTTGCACACAAGTCAActctctctctctcacatcttcttcttcaa 60
|||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 AAAAAAATCATTTTTCTTGCACACAAGTCAACTCTATCTCTCT--CATCTTCTTCTTCAA 58
Query 61 cctctgtctcttcatttctctctACCATGGATCAACAATCTCTAATCT-AAAAACACTTT 119
|||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct 59 CCTCTGTCTC-TCATTT-TCTCTACCATGGATCAACAATCTCTAATCTAAAAAACACGTT 116
Query 120 CGTTGTATCTAAACTCTCCATCTCCAAAAGAAAAACtttttttCTTCTTCTCAGATGGGT 179
| ||||||||||| |||| ||| ||||| ||||| | ||||||
Sbjct 117 CCTTGTATCTAAATTCTCAATC-ACAAAA-AAAAA-----------------A-ATGGGT 156
Query 180 AACGGAATCGGGAAGCT-AAGTAAATGTTTGACCGGAGGTGCTGGTCGGAACAAAAAACC 238
||||||||||||||||| | | |||||||| ||||||| || | ||||||||||| |
Sbjct 157 AACGGAATCGGGAAGCTGACG-AAATGTTTCACCGGAGAAACTCGCCGGAACAAAAAGTC 215
Query 239 CGAGTTATCAATTCTCGAACCAGATCCTTTAGACGAAGGGTTAGGACACTCTTTCTGTTA 298
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 216 TGAGTTATCAATTCTCGAACCAGATCCTTTAGACGAAGGTTTAGGTCATTCTTTCTGTTA 275
Query 299 CGTCAGACCAGACCCGACACGAGTTTCGTCTTCAAAAGTTCACTCAGAAGAAGAAACGAC 358
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CGTTAGACCCGACCCGACCCGAGTTTCGTCTTCAAAAGTTCACTCAGAAGAAGAAACGAC 335
Query 359 GACGTTCCGTACAATCTCCGGCGCTTCCGTTAGTGCTAACACCGCCACACCACTCTCTAC 418
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 336 GACGTTCCGTACAATCTCCGGCGCTTCCGTTAGTGCTAACGCCGCCACACCACTCTCTAC 395
Query 419 TTCTCTCTATGATCCTTACGGACATATCGATAGAGCCGCCGCGTTCGAAAGCACGACGTC 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TTCTTTATATGATCCTTACGGACATATCGATAGAGCCGCCGCGTTCGAAAGCACGACGTC 455
Query 479 GTTTTCGTCGATTCCTTTGCAACCGATTCCGAGAAGTTCCGGTCCGATTGTACCCGGTTC 538
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 456 GTTTTCGTCGATTCCTTTGCAACCGATTCCGAGAAGTTCCTGTCCGATTGTACCCGGTTC 515
Query 539 GGGTCCTTTAGAAAGAGGGTTT-TTATCCGGTCCGATTGAAAGAGGTTTCATGTCCGGTC 597
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 516 GGGTCCTTTAGAAAGAGGGTTTCTT-TCCGGTCCGATTGAAAGAGGTTTCATGTCCGGTC 574
Query 598 CACTTGATGGTTCTTCCGGTCCGATTGATGGTAAAACCGGTTCTGATCAATTTCAGAGAA 657
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 575 CACTTGATGGTTCTTCCGGTCCGATTGCTGGTAAAACCGGTTCTGATCAATTTCAGCGAA 634
Query 658 GTTTCTCTCATGGTTTAGCTAATCTCCGGGTCGGGTCGAGAAAAGGATCTTTAGTTCGGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GTTTCTCTCATGGTTTAGCTAATCTCCGGGTCGGGTCGAGAAAAGGATCTTTAGTTCGGG 694
Query 718 TTCTCCGTCGTGCAATTTCGAAGACGATTACTAGAGGACAGAACTCTATTGTTGCTCCGA 777
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 695 TTCTCCGTCGTGCAATTTCGAAGACGATTACTAGAGGACAAAACTCTATTGTTGCTCCGA 754
Query 778 TCAAACCGGTTAAAGAGCCCGATTGGGTATTCGGGTCGGATAAAACCCGGAT-------C 830
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 755 TCAAATCGGTTAAAGAACCCGATTGGGTATTCGGGTCGGATAAAACCCGGATCCAGAACC 814
Query 831 --CATCAGATCGAGAATAATCTCACTGTTAATAGCTTGAATTTTAGTAGTGAAGGAAGTT 888
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AACACCAGATCGAGAATAACCTCACTGTTAATAGCTTGAATTTTAGTAGTGAAGGAAGTT 874
Query 889 TACTAGACGACGACGTTTCGTTAGAGAGCCAGAATCTTCAATGGGCACAAGGTAAAGCCG 948
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 875 TATTAGACGACGACGTTTCGTTAGAAAGCCAGAATCTTCAATGGGCACAAGGTAAAGCCG 934
Query 949 GTGAGGATCGTGTACATGTGGTTGTATCGGAAGAACATGGATGGCTTTTCGTTGGAATCT 1008
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 935 GTGAGGATCGTGTACATGTAGTTGTATCGGAAGAACATGGATGGCTCTTCGTTGGAATCT 994
Query 1009 ACGATGGATTCAACGGTCCAGATGCGCCGGACTATTTACTCTCTCATTTATATCCAGCCG 1068
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 995 ACGATGGATTCAACGGTCCAGATGCACCTGACTATTTACTCTCTCATTTATATCCAGCCG 1054
Query 1069 TTCATCGTGAGCTTAAAGGATTGTTATGGGACGATCCCAAAACAGATGCAAAATCTTCCG 1128
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1055 TTCATCGTGAGCTTAAAGGATTATTATGGGACGATCCTAAAACAGATGCAAAATCTTCCG 1114
Query 1129 ATGAAGCTGATGTAGAGAATCGTGACTCGAGTTCTGAGAAAAAGTCAAAGAATTGGGAAG 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 ATGAAGCTGATGTAGAGAATCGTGACTCGAGTTCTGAGAAAAAGTCAAAGAATTGGGAAG 1174
Query 1189 AAAGTCAACGACGGTGGAGATGTGAATGGGATCGAGATCTTGACCGTTTACTGAAAGATC 1248
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1175 AAAGTCAACGACGGTGGAGATGTGAGTGGGATCGAGATCTTGACCGTTTATTGAAAGATC 1234
Query 1249 GGAGTAATGGGTTGGATCTAGATCCGGATCCGAATTCGTCTGATGTACTGAAAGCTTTGT 1308
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1235 GGAGTAATGGGTCGGATCTAGATCCGGATCCGAATTCGTCTGATGTATTGAAAGCTTTGT 1294
Query 1309 CACAAGCTTTGAGGAAGACGGAAGAAGCTTATTTGGAGAATGCAGATATGATGCTCGACG 1368
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 CACAAGCCTTGAGGAAGACGGAAGAAGCTTATTTGGAGAATGCAGATATGATGCTCGACG 1354
Query 1369 AAAATCCTGAACTAGCTTTAATGGGTTCTTGTGTT-TTGGTAATGTTGATGAAAGGTGAA 1427
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 1355 AAAATCCTGAACTAGCTTTAATGGGTTCTTGTGTTCTTGTTA-TGTTGATGAAAGGTGAA 1413
Query 1428 GATGTTTATTTGATGAATGTTGGTGATAGTAGAGCTGTTCTTGGGCAAAAAGCTGAGAGT 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 GATGTTTATTTGATGAATGTTGGTGATAGTAGAGCTGTTCTTGGGCAAAAAGCTGAGAGT 1473
Query 1488 GATTATTGGATTGGGAAGATTAAA-CAAGATTTGGAACGTATCAATGAAGAAACTATGAA 1546
|| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1474 GAGTATTGGATTGGGAAGAT-AAGGCAAGATTTGGAACGTATCAATGAAGAAACTATGAA 1532
Query 1547 TGATTTTGATGGTTGTGGTGATGGTGAAGGAGCTAGTTTGGTTCCGACTTTATCAGCTTT 1606
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1533 TGATTTTGATGGTTGTTGTGATGGTGAAGGAGCTAGTTTGGTTCCGAATTTATCGGCTTT 1592
Query 1607 TCAGCTTACTGTTGATCATAGCACTAATGTAGAAGAGGAAGTTAATAGAATTCGAAAGGA 1666
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1593 TCAGCTTACTGTTGATCATAGCACTAATGTAGAAGAGGAAGTTGATAGAATTCGAAAGGA 1652
Query 1667 GCATCCTGATGATGCGAGCGCGGTTTCGAATGAACGGGTTAAAGGTTCGTTGAAGGTCAC 1726
|||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1653 GCATCCGGATGATGCGAGTGCGGTTTCGAATGAACGTGTTAAAGGTTCTTTGAAGGTCAC 1712
Query 1727 TAGAGCTTTCGGTGCGGGTTTCCTTAAGCAGCCTAAATGGAATAACGCGCTTCTAGAGAT 1786
|||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1713 TAGAGCTTTCGGCGCAGGTTTCCTCAAGCAGCCTAAATGGAATAACGCGCTTCTTGAGAT 1772
Query 1787 GTTTCAAATCGATTACAAAGGGACGTCACCATACATCAATTGTTTGCCATCACTTTACCA 1846
|||||||||||||||||||||||| || || |||||||| || |||||||||||||||||
Sbjct 1773 GTTTCAAATCGATTACAAAGGGACATCTCCTTACATCAACTGCTTGCCATCACTTTACCA 1832
Query 1847 TCATAGATTAGGCTCGAAAGACCAGTTTCTGATACTATCATCGGATGGTCTTTACCAATA 1906
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1833 TCATAGATTAGGCTCTAAAGACCAGTTTCTGATACTATCCTCGGATGGTCTTTACCAATA 1892
Query 1907 TTTCACAAACGAAGAAGCGGTTTCAGAGGTTGAACTATTCATCACGTTACAGCCGGAAGG 1966
|||||||||||||||||||||||||||||| ||||| || ||||| || ||||| |||||
Sbjct 1893 TTTCACAAACGAAGAAGCGGTTTCAGAGGTCGAACTCTTTATCACATTGCAGCCTGAAGG 1952
Query 1967 TGACCCGGCTCAGCACTTGGTTCAAGAGCTTCTTTTCCGTGCTGCTAAGAAAGCTGGTAT 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 TGACCCGGCTCAGCACTTGGTTCAAGAGCTTCTTTTCCGTGCTGCTAAGAAAGCTGGTAT 2012
Query 2027 GGATTTCCATGAACTGCTTGAGATACCACAAGGGGAACGGAGACGGTACCACGATGATGT 2086
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2013 GGATTTCCATGAACTACTTGAGATACCGCAAGGGGAACGGAGACGGTACCACGATGATGT 2072
Query 2087 TTCCATTGTAGTGATCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATAAACAAAAAC 2146
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TTCCATTGTAGTAATCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATAAACAAAAAC 2132
Query 2147 C-TATATAATGAACATAGAGAAAACTTAAAGTGTTTCTGAGATGA 2190
| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 2133 CATATATA-TGAACATAGAGAAAACTTGAAGTGTTTCTGAGATGA 2176
> Ahg470787 jgi|Araly1|470787|fgenesh2_kg.1__741__AT1G07630.1
Length=2305
Score = 824 bits (446), Expect = 0.0
Identities = 725/857 (85%), Gaps = 29/857 (3%)
Strand=Plus/Plus
Query 1302 GCTTTGTCACAAGCTTTGAGGAAGACGGAAGAAGCTTATTTGGAGAATGCAGATATGATG 1361
||| ||||||||||| ||||||| || || ||||| ||||| || | |||||||| ||||
Sbjct 1225 GCTCTGTCACAAGCTCTGAGGAAAACAGAGGAAGCGTATTTAGATACTGCAGATAAGATG 1284
Query 1362 CTCGACGAAAATCCTGAACTAGCTTTAATGGGTTCTTGTGT-TTTGGTAATGTTGATGAA 1420
||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct 1285 CTCGACGAAAATCCTGAACTAGCTTTAATGGGTTCTTGTGTGCTT-GTGATGTTAATGAA 1343
Query 1421 AGGTGAAGATGTTTATTTGATGAATGTTGGTGATAGTAGAGCTGTTCTTGGGCAAAAAGC 1480
|||||||||| ||||| |||||||||||||||||||||||||||| ||||| || ||| |
Sbjct 1344 AGGTGAAGATATTTATGTGATGAATGTTGGTGATAGTAGAGCTGTGCTTGGTCAGAAATC 1403
Query 1481 TG-AGAGTGATTATTGGATT-GGGAAGATTAA-ACAAGATTTGGAACGTATCAATGAAGA 1537
| | | ||||| ||| || | |||| ||| ||| || |||||||| || || |||||
Sbjct 1404 AGAACCG-GATTACTGG-TTAGCTAAGA-TAAGACAGGACTTGGAACGGATTAACGAAGA 1460
Query 1538 AAC--T-ATGAATGATTTTGATGGTTGTGGTGATGGTGAAGGA-GCTAGTTT-GGTTCCG 1592
||| | ||||||||||| || || | | |||| || || | || ||| || |||
Sbjct 1461 AACGATGATGAATGATTTGGAAGG-T-T-GTGAAGGAGATCAATCCT-CTTTAGG-CCCG 1515
Query 1593 ACTTTATCAGCTTTTCAGCTTACTGTTGATCATAGCACTAATGTAGAAGAGGAAGTTAAT 1652
| |||||| ||||||||||| ||||||||||||||||| ||| ||||||| |||||| |
Sbjct 1516 AATTTATCGGCTTTTCAGCTCACTGTTGATCATAGCACAAATATAGAAGAAGAAGTTGAG 1575
Query 1653 AGAATTC-GAAAGGAGCATCCTGATGATGCGAGCGCGGTTTCGAATGAACGGGTTAAAGG 1711
|| | || |||| |||||||| |||||||| | ||| || |||||||||||||||||||
Sbjct 1576 AGGA-TCAGAAACGAGCATCCGGATGATGCTACCGCAGTGACGAATGAACGGGTTAAAGG 1634
Query 1712 TTCGTTGAAGGTCACTAGAGC-TTTCGGTGCGGGTTTCCTTAAGCAGCCTAAATGGAATA 1770
|| ||||| ||||| ||||| ||| ||||| |||||||| ||||||||||||||||| |
Sbjct 1635 CTCCTTGAAAGTCACAAGAGCGTTT-GGTGCTGGTTTCCTAAAGCAGCCTAAATGGAACA 1693
Query 1771 ACGCGCTTCTAGAGATGTTTCAAATCGATTACAAAGGGACGTCACCATACATCAATTGTT 1830
| |||||||| |||||||| ||||| |||||| ||||| ||| ||||||||||| || |
Sbjct 1694 ATGCGCTTCTTGAGATGTTCCAAATTGATTACGTAGGGAAGTCTCCATACATCAACTGCT 1753
Query 1831 TGCCATCACTTTACCATCATAGATTAGGCTCGAAAGACCA-GTTTCTGATACTATCATCG 1889
| || || || ||||| || |||||||| ||||| || || |||||| ||||||||||||
Sbjct 1754 TACCGTCTCTGTACCACCACAGATTAGGGTCGAAGGA-CAGGTTTCTAATACTATCATCG 1812
Query 1890 GATGGTCTTTACCAATATTTCACAAACGAAGAAGCGGTTTCAGAGGTTGAACTATTCATC 1949
|||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1813 GATGGTCTCTACCAATACTTCACAAACGAAGAAGCGGTTTCAGAGGTTGAGCTCTTCATC 1872
Query 1950 ACGTTACAGCCGGAAGGTGACCCGGCTCAGCAC-TTGGTTCAAGAGCTTCTT-TTCCGTG 2007
|| ||||| || ||||| || || ||||| ||| || || ||||||||| || || | |
Sbjct 1873 ACATTACAACCTGAAGGGGATCCAGCTCAACACGTT-GTACAAGAGCTT-TTGTTTAGAG 1930
Query 2008 CTGCTAAGAAAGCTGGTATGGATTTCCATGAACTGCTTGAGATACCACAAGGGGAACGGA 2067
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 1931 CTGCTAAGAAAGCTGGTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGGA 1990
Query 2068 GACGGTACCACGATGATGTTTCCATTGTAGTGATCTCTTTAGAAGGAAGAATGTGGAAAT 2127
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1991 GACGGTATCACGATGATGTTTCAATAGTAGTGATCTCTTTAGAAGGAAGAATGTGGAAAT 2050
Query 2128 CTTGTGTATAAACAAAA 2144
|||||||||||| ||||
Sbjct 2051 CTTGTGTATAAA-AAAA 2066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88178917175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5