BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28900.1
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481805 jgi|Araly1|481805|fgenesh2_kg.4__865__AT2G28900.1 1000 0.0
> Ahg481805 jgi|Araly1|481805|fgenesh2_kg.4__865__AT2G28900.1
Length=770
Score = 1000 bits (541), Expect = 0.0
Identities = 669/726 (92%), Gaps = 28/726 (4%)
Strand=Plus/Plus
Query 68 aaagagaaaaatatcccaaaacc-aaaaac--a-gaggaagaaagaagaagaa-aagaTG 122
||||| ||||||||||||||||| |||||| | || |||||||||||||||| ||||||
Sbjct 44 AAAGAAAAAAATATCCCAAAACCAAAAAACAAAGGAAGAAGAAAGAAGAAGAAGAAGATG 103
Query 123 CCTTCAAGCACATTCTCCGGGACTGTTAGCACGCCGAAGCTGTCGGTGGCAGTGGACATG 182
|||||||||||||||||||| || || |||||||||||||| |||||||| || ||||||
Sbjct 104 CCTTCAAGCACATTCTCCGGTACCGTGAGCACGCCGAAGCTATCGGTGGCGGTTGACATG 163
Query 183 GGAAACCCTTTTCTCAATCTCACCGTTGATGCCTTCCTCAAGATCGGAGCTGTTGGAGTC 242
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 164 GGAAACCCTTTTCTCAATCTCACTGTTGATGCCTTCCTCAAGATCGGAGCTGTTGGAATC 223
Query 243 ACTAAATCTCTTGCAGAAGACACTTACAAGGCCATCGACAAAGGGAGTCTCTCCAAGAGC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ACTAAATCTCTTGCAGAAGACACTTACAAGGCCATCGACAAAGGGAGTCTCTCCAAGAGC 283
Query 303 ACTTTGGAGCATGCGCTTAAGAAGTTGTGTAAAGAAGGTGTTTACTGGGGAGCTGCTGGT 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 284 ACTTTGGAGCATGCGCTTAAGAAGTTGTGTAAAGAAGGTGTTTACTGGGGAGCTGCGGGT 343
Query 363 GGAGTGTACATTGGAACAGAATACGGAATCGAACGTATCCGTGGCAGCAGAGATTGGAAA 422
||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 344 GGAGTTTATATTGGAACGGAATACGGAATTGAACGTATCCGTGGCAGCAGAGATTGGAAA 403
Query 423 AACGCAATGTTAGCAGGCGCGGCGACAGGAGCAGTGCTCTCAGCGGTTGGTAAGAAAGGC 482
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 404 AACGCAATGTTAGCAGGCGCGGCGACAGGAGCAGCGCTCTCTGCGGTTGGTAAGAAAGGC 463
Query 483 AAAGACACTATTGTGATCGATGCCATTCTTGGTGGCGCGCTTGCAACCGCTTCTCAGTTC 542
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 464 AAAGACACTATCGTGATCGATGCCATTCTTGGTGGCGCGCTTGCAACTGCTTCTCAGTTC 523
Query 543 GTTAACAATCATTATTTCTACTGATTCTCCATCTTCCTTTAGGGACCAATTTGGTTCATA 602
||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 524 ATTAACAATCATTATTTCTACTGATTTTCAATCTTCCTATAGGGACCAATTTGGTTCATA 583
Query 603 TGGTGTGGATTCCTTTGTTTACTCTTTAAATAATAATAAAAAACAATGTAGTGTTTTTGA 662
||||||||||||||||||||||| ||| || | |||||||||||||||||
Sbjct 584 TGGTGTGGATTCCTTTGTTTACT----AAA-AA-A--------CAATGTAGTGTTTTTGA 629
Query 663 AATGAATACATTCGAGTATTGTTGACGTTAAATATGCAATTTAGCTATTTTCAATATGAG 722
| |||||||||| |||||||||| | || | |||||||||||||||| ||||||||
Sbjct 630 A-TGAATACATTTGAGTATTGTTAA--TT---T--GCAATTTAGCTATTTTAAATATGAG 681
Query 723 AAATGCCTCGAAATA-TGAAAATTTGTATAGAGAGTAGTAATGATTTTGTGGTTTCTATA 781
||||||||| ||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 682 AAATGCCTCAAAACAATGAAAATTTGTATAGAAAGTAGTAATGATTTTGTGGTTTCTATA 741
Query 782 AAACTC 787
||||||
Sbjct 742 AAACTC 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32404479450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5