BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28910.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481806 jgi|Araly1|481806|fgenesh2_kg.4__866__AT2G28910.1 1652 0.0
> Ahg481806 jgi|Araly1|481806|fgenesh2_kg.4__866__AT2G28910.1
Length=1140
Score = 1652 bits (894), Expect = 0.0
Identities = 1013/1070 (95%), Gaps = 10/1070 (1%)
Strand=Plus/Plus
Query 72 TCTTCCTAACGATTCCTTCACTCGAATCAGGTTTGTGAAGGTTTTTTCTAGGGTTTCGAA 131
|||||||||||||| |||||| ||||||||||||||||| ||||||| |||||| ||||
Sbjct 48 TCTTCCTAACGATTTCTTCACACGAATCAGGTTTGTGAAAGTTTTTTGTAGGGTGTCGAG 107
Query 132 AAGATGCCGGCGACAGCAGGAAGAGTGCGTATGCCCGCAAACAATCGGGTGCATAGTAGT 191
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 ACGATGCCGGCGACCGCAGGAAGAGTGCGTATGCCCGCAAACAATCGGGTGCATAGTAGT 167
Query 192 GCAGCGCTTCAGACTCATGGAATATGGCAGAGTGCGATTGGTTATGATCCTTATGCACCA 251
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 168 GCAGCGCTTCAGACTCACGGGATATGGCAGAGTGCGATTGGTTATGATCCTTATGCACCA 227
Query 252 ACTAGTAAAGAAGAGCCTAAGACGACACAACAGAAAACCGAAGATCCCGAGAACTCGTAC 311
||||||||||| || || |||||||| || |||||||| |||||||| |||||||||||
Sbjct 228 ACTAGTAAAGAGGAACCGAAGACGACTCAGCAGAAAACAGAAGATCCTGAGAACTCGTAT 287
Query 312 GCGAGTTTTCAGGGACTTTTGGCTCTTGCTAGGATTACGGGTTCGAATAACGATGAGGCT 371
||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 288 GCGAGTTTTCAAGGTCTTTTGGCTCTTGCTAGAATTACTGGTTCTAATAACGATGAGGCT 347
Query 372 CGTGGTTCTTGTAAGAAGTGTGGCCGTGTTGGGCATTTGACGTTTCAGTGTAGGAATTTC 431
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 348 CGTGGTTCTTGTAAGAAGTGTGGTCGTGTTGGGCATTTGACGTTTCAGTGTAGGAATTTC 407
Query 432 TTGAGTACTAAGGAGGATAAGGAGAAAGATCCTGGTGCGATTGAAGCTGCGGTTTTGTCG 491
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 408 TTGAGTACTAAGGAGGATAAGGATAAAGATCCTGCTGCGATTGAGGCTGCGGTTTTGTCG 467
Query 492 GGGTTGGAGAAGATTaggagaggtgttggtaaaggtgaggtt-gaggaggtgagtagtga 550
||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||
Sbjct 468 GGGTTGGAGAAGATTAGGAGAGGAGTTGGTAAAGGTGA-GTTGGAGGAGGAGAGTAGTGA 526
Query 551 agaggaagaggagagtgagagtTCTGATTCTGATGTTGATTCTGAGATGGAGAGGATTAT 610
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 527 AGAGGAAGAGGAGAGTGAGAGTTCTGATTCGGATGTTGATTCTGAGATGGAGAGGATTAT 586
Query 611 TGCTGAGAGGTTTGGGAAGAAGAAAGGT--GGG-AGTAGTGTTAAGAAGACGAGTTCGGT 667
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 587 TGCTGAGAGGTTTGGGAAGAAGAAAGGTGGGGGTAGTAGTGTTAAGAAGACGAGTTCGGT 646
Query 668 TA-G--GAAGAAGAAGAAGCGTGTTTCTGATGAGTCTGATTCTGATTCGGATTCTGGAGA 724
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GAGGAAGAAGAAGAAGAAGCGTGTTTCTGATGAGTCTGATTCTGATTCGGATTCTGGAGA 706
Query 725 TAGGAAGAGAAGGCGGAGGTCGATGAAGAAGCGGAGTTCGCATaagagaaggagtttgag 784
||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct 707 TAGGAAGAGAAGGCGGAGGTCGAAGAAGAAGCGGAGTTCGCATAAGAGGAGGAGTACGAG 766
Query 785 tgagtctgaggatgaggaagagggaaggagtaagagaagaaaggagaggagaggaagaaa 844
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 767 TGAGTCTGAGGATGAGGATGAGGGAAGGAGTAAGCGAAGAAAGGAGAGGAGAGGAAGAAA 826
Query 845 gagagatgaagatgattctgatgagtctgaggatgaagatgaCAGACGTGTgaagagaaa 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GAGAGATGAAGATGATTCTGATGAGTCTGAGGATGAAGATGACAGACGTGTGAAGAGAAA 886
Query 905 gagtagaaaggagaagaggagaaggagaagCCGTCGTAATCATTCTGATGATTCTGATTC 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GAGTAGAAAGGAGAAGAGGAGAAGGAGAAGCCGTCGTAATCATTCTGATGATTCTGATTC 946
Query 965 AGAGTCTTCTGAAGATGATAGAAGACAGAAGCGGAGGAACAAAGTCGCAGCTTCTTCTGA 1024
||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 947 AGAATCCTCTGAAGATGATAGAAGGCAGAAGCGAAGGAACAAAGTCGCAGCTTCTTCTGA 1006
Query 1025 CTCAGAAGCAAATGTTTCAGGCGATGATGTTTCACGCGTTGGACGTGGTTCTTCTAAGCG 1084
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1007 CTCGGAAGCCAATGTTTCAGGGGATGATGTTTCACGCGTTGGACGTGGTTCTTCTAAACG 1066
Query 1085 GT-CTGAGAAGAAGAGCAGGAAACGTCATCACAGGAAAGAGCGAGAGTAG 1133
|| | |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1067 GTAC-GAGAAGAAGAGCAGGAAACGTCATCACAGGAAAGAGTGAAAGTAG 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5