BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28920.1

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481807 jgi|Araly1|481807|fgenesh2_kg.4__867__AT2G28920.1          665    0.0  


> Ahg481807 jgi|Araly1|481807|fgenesh2_kg.4__867__AT2G28920.1
Length=438

 Score =  665 bits (360),  Expect = 0.0
 Identities = 412/438 (94%), Gaps = 0/438 (0%)
 Strand=Plus/Plus

Query  1    ATGGCATCAAGTTGTTGTGGGGATTACGTGGCGGCGGCGTCACCGGAGATGTCGACAGTG  60
            |||| ||||||||||||||| |||||| || |||||||||| ||||||||| |||| |||
Sbjct  1    ATGGAATCAAGTTGTTGTGGAGATTACATGACGGCGGCGTCGCCGGAGATGGCGACGGTG  60

Query  61   ATGGGATCAGAATCAATCGTGTTGAGACTTCTTTGCGTCGTCTTTATTATCCTCTTCTAC  120
            | |||||| |||||||| | ||||||||||||||| || |||||||| ||||||||||||
Sbjct  61   ACGGGATCTGAATCAATAGCGTTGAGACTTCTTTGTGTAGTCTTTATCATCCTCTTCTAC  120

Query  121  GGTTCTATTATTCTCCTCTGTTTCGTAATGTACCCGAAGCTACCAAAGGAAGAAATCGGC  180
            || || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  GGATCGATTATTCTCCTCTGTTTCGTAATGTACCCGAAGCTACCGAAGGAAGAAATCGGC  180

Query  181  GATGAGGAAGCCGGAGAGCCATTACCTCCCGCCGTGAGACTCACGAAATGCGGCGGTGGA  240
            || || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  181  GACGAAGAAGCCGGTGAGCCGTTACCTCCCGCCGTGAGACTCACGAAATGCGGCGGTGGA  240

Query  241  GACGGCGGAGACGGTGACGGAGTTAAAGCTGACGTGTGTGTGATTTGTTTGGAGGATTTT  300
            |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  241  GACGGCGGTGACGGTGACGGAGTTAGAGCTGACGTGTGTGTGATTTGTTTGGAGGATTTT  300

Query  301  AAAGTAAACGACGTCGTTAGAGTTCTTGTGAGATGCAAGCACGTGTTTCACGTGGATTGT  360
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GAAGTAAACGACGTCGTTAGAGTTCTTGTGAGATGCAAGCACGTGTTTCACGTGGATTGT  360

Query  361  ATAGATTCGTGGTGTTTTTATAAGCTGACGTGTCCGATTTGTAGAGCTCCGTTTCAATGG  420
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  361  ATAGATTCTTGGTGTTTTTATAAGCTGACGTGTCCGATTTGTAGAGCTCCGTTTCAGTGG  420

Query  421  TTTGGTGGTGATTGGTAG  438
            ||||||||||||||||||
Sbjct  421  TTTGGTGGTGATTGGTAG  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15796413846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5