BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28930.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481810 jgi|Araly1|481810|fgenesh2_kg.4__870__AT2G28930.1 2433 0.0
Ahg470784 jgi|Araly1|470784|fgenesh2_kg.1__738__AT1G07570.2 959 0.0
Ahg930902 jgi|Araly1|930902|scaffold_303359.1 154 2e-36
Ahg355547 jgi|Araly1|355547|fgenesh1_pg.C_scaffold_7002720 102 7e-21
> Ahg481810 jgi|Araly1|481810|fgenesh2_kg.4__870__AT2G28930.1
Length=1564
Score = 2433 bits (1317), Expect = 0.0
Identities = 1491/1573 (95%), Gaps = 19/1573 (1%)
Strand=Plus/Plus
Query 1 GGAGGATAAAATGACTTAACTTAAAAGTTAGGCTTAATGTTTTGACAAATCTGTCAAAGG 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 GGAGGATAAAATGACTTAACTTAAAAGTTAGGCTTAATGTATTGACAAATCTGTCAAAGG 60
Query 61 TTTTCATAATAAATTGATTAATTATCTAAAGCTTTGTCttttttttGGTGTT-TGGTTTA 119
||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||
Sbjct 61 -TTTCATAATAAATTGATTAATTATCTAAAACTTTGTCTTTTTTTTTTTGTTGTTGTTTT 119
Query 120 ATTCACTCCTTCATcaaaatcaaaaaca-a-atttacttttgtctgatctctaaaaacaa 177
|| | | | | ||||||| | ||| || | ||||||||||||||||||||||||||
Sbjct 120 GTT-AATACATAATCAAAA-C-AAATCAGAGTTTTACTTTTGTCTGATCTCTAAAAAC-- 174
Query 178 aaaacatgaaaaTGGGATTTGTCGA-AAAAGTGAAGTCTAACGtttttttGTATGCAAAC 236
||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||| |||
Sbjct 175 AAAACATGAAAATTGGATTTGTC-ACAAAAGTGAAATCTAACGTTTTTTTGTATGTTAAC 233
Query 237 TATGTGTTTGGTTGTTGTATAGGTGCAAGTCCGAAGTATATGAGCTCAGAGGCTAATGAT 296
||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 234 TATGTTTTTGGTTGTTGTATAGGTGCAAGTCCGAAGTATACGAGTTCAGAGGCTAATGAT 293
Query 297 TCAC------TGGGAAGTAAAAGCTCTTCTGTGTCAATCAGAACAAACCCAAGAACTGAA 350
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TCACAAAGTATGGGAAGCAAAAGCTCTTCTGTGTCAATCAGAACAAACCCAAGAACTGAA 353
Query 351 GGAGAGATCTTGCAATCTCCTAATCTCAAAAGTTTCACTTTTGCTGAGCTTAAAGCAGCA 410
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 354 GGAGAGATCTTGCAATCTCCTAACCTCAAAAGTTTCACTTTTGCTGAGCTTAAAGCAGCA 413
Query 411 ACTAGGAATTTTAGACCAGATAGTGTTCTTGGTGAAGGTGGTTTTGGTTCTGTTTTCAAA 470
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 414 ACTAGGAATTTCAGACCAGATAGTGTTCTTGGTGAAGGTGGATTTGGTTCTGTTTTCAAA 473
Query 471 GGTTGGATTGATGAACAGACTCTTACTGCTTCTAAACCGGGAACCGGTGTGGTTATTGCT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GGTTGGATTGATGAACAGACTCTTACTGCTTCTAAACCGGGAACCGGTGTGGTTATTGCT 533
Query 531 GTCAAAAAACTTAACCAAGATGGTTGGCAAGGTCACCAGGAATGGCTGGCGGAAGTGAAT 590
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 534 GTTAAAAAGCTTAACCAAGATGGTTGGCAAGGTCACCAAGAATGGCTGGCGGAAGTGAAT 593
Query 591 TACTTGGGGCAGTTTTCGCATCCTAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGAT 650
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TACTTGGGGCAGTTTTCACATCCTAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGAT 653
Query 651 GAGCATCGTCTTCTTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCATTTGTTC 710
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAGCATCGTCTTCTTGTGTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCATTTGTTC 713
Query 711 AGAAGAGGTTCTTATTTTCAACCTTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGT 770
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 714 AGAAGAGGTTCTTATTTTCAACCGTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGT 773
Query 771 GCAGCGAAAGGTCTTGCGTTTCTTCATAACGCCGAGACTAGTGTCATATACCGCGATTTC 830
|| || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 774 GCTGCCAAAGGTCTTGCTTTTCTTCATAACGCTGAGACTAGTGTCATATACCGTGATTTC 833
Query 831 AAAACGTCGAATATACTGCTTGATTCGGAGTACAATGCTAAGCTTTCTGATTTCGGGCTA 890
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 834 AAAACGTCGAATATACTTCTTGATTCGGAGTACAATGCTACGCTTTCTGATTTCGGGCTG 893
Query 891 GCTAAAGACGGTCCAACGGGTGATAAAAGCCATGTCTCTACGCGGATCATGGGTACTTAC 950
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 894 GCTAAAGATGGTCCAACGGGCGATAAAAGCCATGTCTCTACACGGATCATGGGTACTTAC 953
Query 951 GGATACGCAGCTCCTGAATATCTTGCAACTGGTCATTTAACAACCAAAAGTGATGTCTAT 1010
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GGATATGCAGCTCCTGAATATCTTGCAACTGGTCATTTAACAACCAAAAGTGATGTCTAT 1013
Query 1011 AGCTACGGTGTTGTGCTTTTGGAGGTGTTGTCTGGACGGAGAGCTGTAGACAAGAACCGT 1070
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1014 AGCTACGGTGTCGTGCTTTTGGAGGTGTTGTCTGGACGGAGAGCTGTGGACAAGAACCGT 1073
Query 1071 CCACCAGGAGAGCAAAAGCTAGTGGAATGGGCAAGACCGTTACTTGCTAACAAAAGGAAG 1130
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1074 CCACCAGGAGAGCAAAAGCTGGTGGAATGGGCAAGACCGTTACTTGCAAACAAAAGGAAG 1133
Query 1131 TTATTCCGAGTTATCGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTGTAAA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTATTCCGAGTTATCGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTGTAAA 1193
Query 1191 GTAGCTACTCTTGCGCTGAGATGCCTCACATTCGAGATAAAGCTGAGACCAAACATGAAC 1250
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1194 GTAGCTACTCTGGCGCTGAGATGCCTCACATTCGAGATAAAGCTGAGACCGAACATGAAT 1253
Query 1251 GAGGTTGTTTCTCACCTCGAACACATCCAAACTTTGAATGAAGCAGGAGGAAGAAATATT 1310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GAGGTTGTTTCTCACCTCGAACACATCCAAACTTTGAATGAAGCAGGAGGAAGAAATATC 1313
Query 1311 GATATGGTCCAGAGGAGAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACCAAAAACCA 1370
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GATAAGGTCGAGAGAAGAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACCAAAAACCA 1373
Query 1371 AATGCAGGTTTTGCTCGACAAACTGCTGTAGGCGTCATAGCTACTGCTTATCCACGCCCG 1430
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1374 AATGCAGGTTTTGCTCGGCAAACAGCTGTAGGCGTCATAGCTACTGCTTATCCACGCCCG 1433
Query 1431 TCTGATTCGCCTCTGTTTGTTTGAGTACGAAACGATGAATGTTCTCTTTAGTTCGGATGT 1490
|||||||||||||||||||| | |||| ||||||||||||||||| ||||||||||||||
Sbjct 1434 TCTGATTCGCCTCTGTTTGTCTAAGTAAGAAACGATGAATGTTCTGTTTAGTTCGGATGT 1493
Query 1491 ACAGTTTTGTTTCTGCTTGTGTACCGAAAGGATTCTCAGTTCATGGCTCGTTTACACGAC 1550
|||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||
Sbjct 1494 ACAGTTTTGTTTCTGCTTATGTACCGAAAGGATTC--AGTTCATGGCTCAATTACATGAC 1551
Query 1551 TCAGAGATTTGAC 1563
|||||||||||||
Sbjct 1552 TCAGAGATTTGAC 1564
> Ahg470784 jgi|Araly1|470784|fgenesh2_kg.1__738__AT1G07570.2
Length=1547
Score = 959 bits (519), Expect = 0.0
Identities = 933/1130 (83%), Gaps = 39/1130 (3%)
Strand=Plus/Plus
Query 318 TCTGTGTCAATCAGAACAAACCCAAGAACTGAAGGAGAGATCTTGCAATCTCCTAATCTC 377
|||||||| | ||| ||| ||| ||||||| || |||||||| || ||||| || |||
Sbjct 293 TCTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATCTTACAGTCTCCAAACCTC 352
Query 378 AAAAGTTTCA-CTTTTGCTGAGCTTAAAGCAGCAACTAGGAATTTTAGACCAGATAGTGT 436
|| ||||| | | |||||||| |||||| | ||||| |||||||| |||||||| |||||
Sbjct 353 AAGAGTTTTAGC-TTTGCTGACCTTAAATCCGCAACCAGGAATTTCAGACCAGACAGTGT 411
Query 437 TCTTGGTGAAGGTGGTTTTGGTTCTGTTTTCAAAGGTTGGATTGATGA-ACAGACTCTTA 495
|||||||||||||| || |||| ||| |||||||| ||||||||||| | || |||| |
Sbjct 412 GCTTGGTGAAGGTGGATTCGGTTGTGTGTTCAAAGGATGGATTGATGAGA-AGTCTCTCA 470
Query 496 CTGCTTCTAA-ACCGGGAACCGGTGTGGTTATTGCTGTCAAAAAACTTAACCAAGATGGT 554
|||| || || ||| || || ||| |||||||||| |||||||| |||||||||||||||
Sbjct 471 CTGCCTC-AAGACCAGGCACTGGTTTGGTTATTGCCGTCAAAAAGCTTAACCAAGATGGT 529
Query 555 TGGCAAGGTCACCAGGAATGGCTGGCGGAAGTGAATTAC-TTGGGGCAGTTTTCGCATCC 613
||||||||||||||||| |||||||| |||||||||||| |||| |||||||| |||
Sbjct 530 TGGCAAGGTCACCAGGAGTGGCTGGCTGAAGTGAATTACCTTGGT-CAGTTTTCTCATGG 588
Query 614 TAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGATGAGCATCGTCTTCTTGTTTATGA 673
| | |||||||| ||||| ||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 589 TCACCTTGTGAAGCTGATCGGTTATTGCCTAGAGGATGAGCACCGTCTTCTTGTTTACGA 648
Query 674 GTTCATGCCTCGTGGAAGCTTAGAGAATCAT-TTGTTCAGAAGAGGTTCT-TATTTTCAA 731
|||||||||||| || ||||| ||||||||| || ||||| || |||| | || || |||
Sbjct 649 GTTCATGCCTCGGGGTAGCTTGGAGAATCATCTT-TTCAGGAGGGGTT-TGTACTTCCAA 706
Query 732 CCTTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGTGCAGCGAAAGGTC-TTGCGTT 790
|| |||||||||| || ||||||||||||||||||||||| || ||||| | |||| ||
Sbjct 707 CCGTTATCTTGGAAACTTCGGTTGAAAGTTGCTCTTGGTGCTGC-AAAGGGCCTTGCTTT 765
Query 791 TCTTCATAACGCCGAGACTAGTGTCATATACCGCGATTTCAAAACGTCGAATATACTGCT 850
|||||| | |||||||||| || |||||||| |||||||| || || ||||| || ||
Sbjct 766 TCTTCACAGTTCCGAGACTAGAGTGATATACCGAGATTTCAAGACTTCTAATATCCTTCT 825
Query 851 TGATTCGGAGTACAATGCTAAGCTTTCTGATTTCGGGCTAGCTAAAGACGGTCCAACGGG 910
||| ||||||||||| || |||||||||||||| ||| | || || || || |||| ||
Sbjct 826 TGACTCGGAGTACAACGCAAAGCTTTCTGATTTTGGGTTGGCCAAGGATGGGCCAATAGG 885
Query 911 TGATAAAAGCCATGTCTCTACGCGGATCATGGGTACTTACGGATACGCAGCTCCTGAATA 970
||||||||| ||||||||||| ||| |||||||||| ||||||| |||||||| |||||
Sbjct 886 TGATAAAAGTCATGTCTCTACACGGGTCATGGGTACGCACGGATATGCAGCTCCCGAATA 945
Query 971 TCTTGCAACTGGTCATTTAACAACCAAA-AGTGATGTCTATAGCTACGGTGTTGTGCTTT 1029
|||||||| |||||| ||||||| ||| |||||||||||||||| || ||||| |||
Sbjct 946 CCTTGCAACCGGTCATCTAACAAC-AAAGAGTGATGTCTATAGCTTTGGGGTTGTCCTTC 1004
Query 1030 TGGAGGTGTTGTCTGGACGGAGAGCTGTAGACAAGAACCGTCCA-CCAGGAGAGCAA-AA 1087
||||| |||||||||| || |||| || ||||||||||||||| || |||||| | ||
Sbjct 1005 TGGAGCTGTTGTCTGGTCGTCGAGCCGTGGACAAGAACCGTCCATCC-GGAGAG-AGGAA 1062
Query 1088 GCTAGTGGAATGGGC-AAGACCGTTACTT-GCTAA-CAAAAGGAAGTTATTCCGAGTTAT 1144
|| ||||| ||||| || ||| | || | | ||| |||||||||| ||||| |||| ||
Sbjct 1063 CCTTGTGGAGTGGGCTAA-ACCAT-ACCTCG-TAAACAAAAGGAAGATATTCAGAGTCAT 1119
Query 1145 CGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTGTAAAGTAGCTACTCT-TG 1203
|||||| ||||| || || || ||||| ||||||||||| |||||||| |||||||| |
Sbjct 1120 CGATAATCGTCTTCAGGACCAGTACTCTATGGAAGAAGCATGTAAAGTGGCTACTCTGT- 1178
Query 1204 CGCTGAGATGCCTCAC-ATTCGAGATAAAGCTGAGACCAAACATGAACGAGGTTGTTTCT 1262
| |||||||| ||||| | ||||| ||||||||||||||||||| ||||||||||||
Sbjct 1179 CTCTGAGATGTCTCACCACA-GAGATTAAGCTGAGACCAAACATGAGCGAGGTTGTTTCG 1237
Query 1263 CACCTCGAACACATCCAAACTTTGAATGAAGCAGGAGGAAGAAATATTGATATGGTCCAG 1322
|||||||||||||| || |||| |||| ||| ||| ||||||| |||| | | ||
Sbjct 1238 CACCTCGAACACATTCAGTCTTTAAATGCTGCAATAGGGGGAAATATGGATA-GAAC-AG 1295
Query 1323 AG-GA-GAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACCAAAAACCAAATGCAGGTT 1380
|| || | |||||||||||||| || ||||||| | || | ||||| ||||||||||||
Sbjct 1296 AGAGAAGGATGCGTAGGAGAAGTGACAGTGTTG-T--CAGCAAAAAAGCAAATGCAGGTT 1352
Query 1381 TTGCTCGACAAACTGCTGTAGGC-GTCATAGCTACTGCTTATCCACGCCC 1429
|||||||||| |||||||| ||| || | || | ||||||||| |||||
Sbjct 1353 TTGCTCGACAGACTGCTGTGGGCAGT-ACAGTTGTTGCTTATCCTCGCCC 1401
> Ahg930902 jgi|Araly1|930902|scaffold_303359.1
Length=1459
Score = 154 bits (83), Expect = 2e-36
Identities = 415/568 (73%), Gaps = 52/568 (9%)
Strand=Plus/Plus
Query 558 CAAGGTCACCAG-GAATGGCTGGCGGAAGTGAAT-TACTTGGGGCAGTTTTCGCATCCTA 615
|||||||||| | ||||||||| ||||||| || | ||||| || || |||| |
Sbjct 408 CAAGGTCACC-GTGAATGGCTGACGGAAGT-TATGTTTTTGGGACAATTGAAGCAT-AAA 464
Query 616 ATCTT-GTGAAACTGATTGGTTATTGCTT-AGAGGATGAGCATCG-TCTTCTTGTTTATG 672
| ||| |||||| ||||||||||||| || ||||| || ||| | | |||||||||||
Sbjct 465 AACTTGGTGAAATTGATTGGTTATTG-TTGTGAGGAAGAACATAGAAC-TCTTGTTTATG 522
Query 673 AGTTCATGCCTCGTGGAAGCTTAGAGAATCAT-TTGTTCAGAAGAGGTTCTTATTTTCAA 731
||||||||||||||||||||||||||||||| || ||||||||| ||| | |
Sbjct 523 AGTTCATGCCTCGTGGAAGCTTAGAGAATCAACTT-TTCAGAAGATACTCTGCCT--CG- 578
Query 732 CCTTTATCTTGGACTCTCCG-GT-TGAAAGTT-GCTCTTGGTGCAGCGAA-AGGTCTTGC 787
| || | ||| || | | |||| | | |||| ||| || || || ||| ||| |
Sbjct 579 C-TTC--CATGG--TCAACAAGAATGAA-GATCGCTCATGGAGCTGC-AACAGGACTT-C 630
Query 788 GTTTCTT-CAT-AACGCCGAGACTAGTGTCATATACCGCGATTTCAAAACGTCGAATATA 845
||||| || || ||||| | | || || || || ||||||||| | ||||||||
Sbjct 631 AATTCTTACACGAA-GCCGAAAATCCCGTTATCTATCGGGATTTCAAAGCCTCGAATAT- 688
Query 846 CT-GCTT-GATTCGGAGTACAATGCTAAGCTTTCTGATTTCGGGCTAGCTAAAGACGGTC 903
|| | || |||||||| |||| || || || ||||| |||||| |||| |||||||| |
Sbjct 689 CTTG-TTAGATTCGGATTACACGGCGAAACTCTCTGACTTCGGGTTAGCCAAAGACGGAC 747
Query 904 CA-ACGGGTGATAAAAGC-CATGTCTCTACGCG-GATCATGGGTACTTACGGATACGCAG 960
|| | || || | | | || || || ||||| | | ||||| || | || ||||| |
Sbjct 748 CAGAAGGA-GACGACA-CTCACGTGTCAACGCGAG-TGATGGGCACACAAGGCTACGCGG 804
Query 961 CTCCTGAATA--TCTTGCAACTGGTCATTTAACAACCAA-AAGTGATGTCTATAGCTACG 1017
|||||||||| || || | | |||||||||||| | || |||||| || || |||| ||
Sbjct 805 CTCCTGAATACATCATG-ACC-GGTCATTTAACAGC-AAGAAGTGACGTGTACAGCTTCG 861
Query 1018 GTGTTGTGCTTT-TGGAGGTGTTGTCTGGACGGAGAGCTGTAGACAAGAACCG-TCCACC 1075
| || ||| || | ||| | ||| ||||||| ||| | |||||||| || | || | |
Sbjct 862 GAGTCGTG-TTGCTCGAGCTTTTGACTGGACGAAGATCAGTAGACAAAAAGAGATC-ATC 919
Query 1076 -AGGAGAGCAAAAGCTAGTGGAATGGGC 1102
||| || || || |||||||| |||||
Sbjct 920 GAGG-GAACAGAACCTAGTGGACTGGGC 946
> Ahg355547 jgi|Araly1|355547|fgenesh1_pg.C_scaffold_7002720
Length=1341
Score = 102 bits (55), Expect = 7e-21
Identities = 229/309 (74%), Gaps = 28/309 (9%)
Strand=Plus/Plus
Query 608 GCATCCTAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGATGAGCATCGTCTTCTTGT 667
||| || ||||| ||||| ||||| || ||||||| ||||| || ||| | ||||||||
Sbjct 441 GCACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAGACTTCTTGT 500
Query 668 TTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCATTTGTTCAGAAGAG-GTTCTTATT 726
|||||||||||||||||||||||| |||||| ||| | |||||||| | |||| |
Sbjct 501 TTATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAG-GTGTTCCC-T- 557
Query 727 TTCAACCTTTATCTTGGACT-CTCCGGTTGAAAGTTGCTCTTG-GT-GCAGCGAAAGGTC 783
| || | | ||||| || ||||||| | | | ||| | || || || ||||
Sbjct 558 ---A-CCGCTGCCATGGACAACTA-GGTTGAA-GAT-CGCTTACGAAGCTGCCAAGGGTC 610
Query 784 TTGC-GTTTCTTCAT-AACGCCGAGACTAG--TGTCATATACCGCGATTTCAAAACGTCG 839
| | |||||| ||| || ||||||| || |||||| || ||||||||||| | ||
Sbjct 611 TA-CAGTTTCTCCATGAA-GCCGAGA--AGCCTGTCATCTATCGCGATTTCAAGGCCTCC 666
Query 840 AATATACT-GCTT-GATTCGGAGTACA-ATGCTAAGCTTTCTGATTTCGGGCTAGCTAAA 896
||||| || | || ||||| || || | | || || || || || ||||||||||| |||
Sbjct 667 AATAT-CTTG-TTAGATTCTGATTATACA-GCGAAACTCTCGGACTTCGGGCTAGCAAAA 723
Query 897 GACGGTCCA 905
||||| |||
Sbjct 724 GACGGACCA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5