BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28940.2
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481811 jgi|Araly1|481811|fgenesh2_kg.4__871__AT2G28940.2 2279 0.0
> Ahg481811 jgi|Araly1|481811|fgenesh2_kg.4__871__AT2G28940.2
Length=1490
Score = 2279 bits (1234), Expect = 0.0
Identities = 1391/1466 (95%), Gaps = 14/1466 (1%)
Strand=Plus/Plus
Query 1 GAAGAACATGAAGTGTTTTCACTTCACCAATGGCGACAAGAGAACAACAACAACAATCGA 60
||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 1 GAAGATCATGAAGTGTTTTCACTTCACCAATGGCGACAAGAG---AGGAACATCAATCGA 57
Query 61 AGAAGGAGTAGGAGGAGGAGACAGTGTTGTTTCAAGAGCTTCAAGACTCTCATGGGCTCG 120
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 58 CGAAGGAGGAGGAGGAGGAGACAGTGTTATTTCAAGAGCTTCAAGACTCTCATGGGCTCG 117
Query 121 TTCTCTAAGCGTAGCATCATCCACCACTTCAGACCCAACTCGCCGGTCCGAGTTTGACTC 180
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 118 GTCTCTAAGCGTAGCATCATCCACCACTTCAGACCCAACTCGGAGGTCTGAGTTTGACTC 177
Query 181 AGACTGGAGTTTCTCACCGGAAAGACTTACTTTTCCCAAGCCATTAAGTCAACGTTGGAT 240
|||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 178 AGACTGGAGTTTCTCACCGGAACGACTTAGTTTTCCCAAACCATTAAGTCAACGTTGGAT 237
Query 241 CGGTGGACTTGTTCCTGAGAATGATCTAAAGGTGTTTACTTTCAAAGAGCTGAAAATAGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 238 CGGTGGACTTGTTCCTGAGAATGATCTAAAGGTGTTTACTTTCAAAGAGCTGAAGTTGGC 297
Query 301 TACTAAA-GGTTTCAATAGAGGTCTTTTGATTGGCGAAGGAGGGTTTGGTTGCGTTTATA 359
||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 298 TACTAAAGGGTTT-AGTAGAGGTCTTTTGATTGGTGAAGGAGGGTTTGGTTGCGTTTATA 356
Query 360 GAGGTGTTGTTGATGTTTCAGACTCTAATGGTTTTGATTCGAAGATTAATGTTGCTGTTA 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 GAGGTGTTGTTGATGTTTCAGACTCAAATGGTTTTGATTCGAAGATTAATGTTGCTGTTA 416
Query 420 AACAGCTTAATCGTCAAGGTTTACAGGGGCATAAGGAATGGATCAATGAGGTGAATTTTC 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 AACAGCTTAATCGTCAAGGTTTACAGGGGCATAAAGAATGGATCAATGAGGTGAATTTTC 476
Query 480 TAGGAGTAGTGAATCATCCAAATCTTGTGAAGTTAGTTGGGTATTGTGCTGATGATGATG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TAGGAGTAGTGAATCATCCAAATCTTGTGAAGTTAGTTGGGTATTGTGCTGATGATGATG 536
Query 540 AAAGAGGGATGCAAAGGCTTCTAGTCTATGAACTTATGTGTAATAAGAGCTTGGAGGATC 599
|||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 537 AAAGAGGGATGCAAAGGCTTCTTGTTTACGAACTTATGTGTAATAAAAGCTTGGAGGATC 596
Query 600 ATCTCGTAGGCCGAGTTGTGTCGGTATCTCTACCGTGGATGATGAGGTTGAAGATTGCGC 659
||||||||||| |||||||||| ||||| || |||||||||| |||||||||||||||||
Sbjct 597 ATCTCGTAGGCAGAGTTGTGTCTGTATCGCTTCCGTGGATGACGAGGTTGAAGATTGCGC 656
Query 660 AAGATGCTGCTCAAGGCTTAGCTTATCTTCATGAAGAAATGGATTTTCAGTTGATATTTC 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAGATGCTGCTCAAGGCTTGGCTTATCTTCATGAAGAAATGGATTTTCAGTTGATATTTC 716
Query 720 GAGATTTCAAGTCTTCAAACATCTTGCTTGATGAGAGATTCGGTGCAAAGCTCTCGGATT 779
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 717 GAGATTTCAAGTCTTCAAACATCTTGCTTGACGAGAGATTCGGTGCAAAGCTTTCGGATT 776
Query 780 TTGGATTAGCTAGGCAAGGACCTCCTGAAGGACTTGGTCATGTCTCAACTTCAGTTGTAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTGGATTAGCTAGGCAAGGACCTCCTGAAGGACTTGGTCATGTCTCAACTTCAGTTGTAG 836
Query 840 GTACGGTTGGTTACGCAGCTCCTGAGTATGTACAAACCGGGAAATTGACGGCAAAGAGTG 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 837 GTACGGTTGGTTACGCAGCTCCTGAGTATGTACAAACCGGGAAATTGACGGCAAAGAGCG 896
Query 900 ATGTATGGAGCTTTGGGGTAGTGTTGTATGAACTGATCACGGGAAGACGAGCAGTGGATA 959
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 897 ATGTTTGGAGCTTTGGGGTAGTGTTGTATGAACTGATCACTGGAAGACGAGCAGTGGATA 956
Query 960 GAAATCGACCTCGAGGTGAACAGAAGCTTTTAGAATGGGTGAAGCCTTATGTATCAGACT 1019
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 957 GAAATCGACCTCGGGGGGAACAGAAGCTTTTAGAATGGGTGAAACCTTATGTATCAGACT 1016
Query 1020 CGAAGAAGTTCCAT-CTGATTGTCGATCCACGGCTCGAAGGCCAGTACTACTGTATGAAG 1078
||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1017 CGAAGAAATTCCATGCC-ATTGTCGATCCGCGGCTCGAAGGCCAGTACTACTGTATGAAG 1075
Query 1079 TCTGTTCAAAGAGTAGCTGCTTTAGCAAACAAATGTCTAATGAAGCAACCGAAATCTCGG 1138
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCTGTTCAGAGAGTAGCTGCTTTGGCAAACAAATGTCTAATGAAGCAACCGAAATCTCGG 1135
Query 1139 CCTAAAATGAGCGAAGTCGTATCACTACTTGGACGCATCATCGATGAAGAAGCGGAAAAC 1198
|||| |||||||||||| || ||||| ||||||||||||||||| |||||||||||| |
Sbjct 1136 CCTAGAATGAGCGAAGTTGTTTCACTTCTTGGACGCATCATCGACGAAGAAGCGGAAGAT 1195
Query 1199 GTTCCTCCGCCAGTTGCTGATGAAACAGAAGAGATAATCAAAGCTGAGCTCAATGGAGAG 1258
| ||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 1196 GCTCCTCCGCCAGTTACTGATGAAACAGAAGAGATCATCAAAGCTGAGATAAATGGAGAG 1255
Query 1259 AGTGAGCCTGAGCTAAAGAAGCAAGGTAGTAGTTATCGTAAGAAGGTTCTTGATCTTAGG 1318
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1256 AGTGAGCCTGAGCTAAAGAAGCAAGGGAGTAGTTATCGTAAGAAGGTTCTTGATCTTAGG 1315
Query 1319 GATAAGATGAACTTAAACAAGTCGCTTTCGAAGCTAGACTGGCGAAACTGGACACCAGGA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GATAAGATGAACTTAAACAAGTCGCTTTCGAAGCTAGACTGGCGAAACTGGACACCAGGA 1375
Query 1379 CTGGTCAGAACATGGTAGTAGAAATAGTGTCTTCACTGTATATAAACTTCTTA---AGCA 1435
|||||||||||||||||| | || ||||||| ||||||||||||||||||||| | ||
Sbjct 1376 CTGGTCAGAACATGGTAG-A-AA-TAGTGTCCTCACTGTATATAAACTTCTTAGCCACCA 1432
Query 1436 TTTGCTTATGTATATGTTTG-AAAGC 1460
||||||| | |||||||||| |||||
Sbjct 1433 TTTGCTTGTATATATGTTTGGAAAGC 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5