BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28950.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933364 jgi|Araly1|933364|scaffold_401352.1 1317 0.0
> Ahg933364 jgi|Araly1|933364|scaffold_401352.1
Length=815
Score = 1317 bits (713), Expect = 0.0
Identities = 781/815 (96%), Gaps = 0/815 (0%)
Strand=Plus/Plus
Query 93 tctcagtctctctctcAGATAATGGCAATGTTGGGCTTGGTTTTATCTGTTCTTACTACA 152
||||| |||||||||| | |||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 TCTCAATCTCTCTCTCTGGTAATGGCAATGTTGGGTTTGGTTTTATCTGTTCTTACCACA 60
Query 153 ATTCTTGCATTGTCTGAAGCAAGAATCCCAGGAGTTTACAATGGTGGTGGTTGGGAAACT 212
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATTCTTGCATTGTCTGAAGCAAGAATCCCAGGAGTTTACAATGGAGGTGGTTGGGAAACT 120
Query 213 GCTCACGCCACTTTCTACGGTGGCTCTGATGCTTCTGGAACAATGGGAGGAGCTTGTGGT 272
||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 121 GCTCATGCCACTTTCTATGGTGGCTCTGATGCTTCTGGAACCATGGGAGGTGCTTGTGGT 180
Query 273 TATGGTAACTTATACAGCCAAGGCTATGGTGTGAACACGGCGGCTTTAAGCACGGCTCTG 332
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 TATGGTAACTTATACAGCCAAGGCTATGGTGTGAACACGGCGGCTCTAAGCACGGCTCTG 240
Query 333 TTCAACAATGGTTTTAGCTGTGGTGCTTGTTTTGAGCTCAAATGTGCTAGTGATCCAAAA 392
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 241 TTCAACAATGGTTTTAGCTGTGGTGCTTGTTTTGAGCTCAAATGTGCGAGTGATCCAAGA 300
Query 393 TGGTGCCATTCTGGTAGTCCTTCAATCTTCATCACTGCGACTAATTTCTGTCCTCCGAAC 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGTGCCATTCTGGTAGTCCTTCAATCTTCATCACTGCGACTAATTTCTGTCCTCCGAAC 360
Query 453 TTTGCTCAGCCTAGTGACAATGGTGGTTGGTGTAACCCTCCTAGACCTCACTTTGATCTT 512
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 361 TTTGCTCAGCCTAGTGACAATGGCGGTTGGTGTAACCCTCCTAGGCCTCACTTTGATCTT 420
Query 513 GCTATGCCTATGTTTCTCAAGATCGCTGAGTATCGTGCCGGAATCGTCCCCGTCTCTTTC 572
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 421 GCTATGCCTATGTTCCTTAAGATTGCTGAGTATCGCGCCGGAATCGTCCCCGTCTCTTTC 480
Query 573 CGCCGAGTGCCATGCCGGAAGAGAGGAGGAATAAGGTTCACAATCAACGGTTTCCGTTAT 632
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 481 CGCCGTGTGCCATGCCGGAAAAGAGGAGGAATAAGGTTCACGATCAACGGTTTCCGTTAC 540
Query 633 TTTAACTTGGTTCTAGTCACTAACGTCGCTGGCGCCGGAAACATAGTGCGGCTAGGTGTG 692
|||||||||||||||||||| |||||||| |||| |||||||||||| || ||||| |||
Sbjct 541 TTTAACTTGGTTCTAGTCACAAACGTCGCCGGCGTCGGAAACATAGTCCGACTAGGAGTG 600
Query 693 AAAGGAACACATACTTCGTGGATGACCATGAGTCGTAACTGGGGACAAAACTGGCAATCT 752
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 601 AAAGGAACACATACTTCGTGGATGAGCATGAGTCGTAACTGGGGGCAAAACTGGCAATCT 660
Query 753 AACTCAGTTTTGGTTGGTCAGTCACTTTCTTTTAGAGTCACAAGCAGTGACCGTAGAAGC 812
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 AACTCAGTTTTGGTTGGTCAGTCACTTTCTTTTAGAGTCACAGGCAGTGACCGTAGAAGC 720
Query 813 TCGACGTCGTGGAACATTGCTCCGGCGAATTGGAAGTTTGGTCAGACTTTCATGGGAAAG 872
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 TCGACGTCGTGGAACATTGCTCCGGCGAATTGGCAGTTTGGTCAGACTTTCATGGGAAAG 780
Query 873 AACTTCAGAGTCTGAGGGCATTATCGGAAACTCAT 907
||||||||||||||||||||| |||||||||||||
Sbjct 781 AACTTCAGAGTCTGAGGGCATAATCGGAAACTCAT 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5