BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28970.1

Length=2361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg900676 jgi|Araly1|900676|Al_scaffold_0004_1326                    257    2e-67
  Ahg887387 jgi|Araly1|887387|Al_scaffold_0190_3                       145    2e-33


> Ahg900676 jgi|Araly1|900676|Al_scaffold_0004_1326
Length=255

 Score =  257 bits (139),  Expect = 2e-67
 Identities = 165/178 (93%), Gaps = 0/178 (0%)
 Strand=Plus/Plus

Query  1429  ATGACAAATAACTTTCAGAGAGTTCTTGGTGAAGGAGGCTTTGGAGTCGTTTATCATGGT  1488
             ||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||
Sbjct  1     ATGACCAATAACTTTCAAAGAATTCTTGGTGAAGGAGGGTTTGGAGTCGTTTATCACGGT  60

Query  1489  TGTGTTAATGGTACCCAACAAGTAGCTGTTAAATTGCTCTCTCAATCATCTTCCCAAGGC  1548
             |||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  61    TGTGTTAATGATACACAACAAGTAGCTGTTAAATTGCTCTCTCAATCATCATCTCAAGGC  120

Query  1549  TATAAACATTTCAAGGCAGAGGTGGAACTTCTTATGAGAGTACACCATAAAAATTTGG  1606
             ||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||
Sbjct  121   TATAAACATTTCAAGGCTGAGGTGGAACTGCTTATGAGGGTACACCATATAAATTTGG  178


> Ahg887387 jgi|Araly1|887387|Al_scaffold_0190_3
Length=870

 Score =  145 bits (78),  Expect = 2e-33
 Identities = 97/106 (92%), Gaps = 2/106 (2%)
 Strand=Plus/Plus

Query  529  CATTTCGCTGAGATACAAACCCTTGCAGCCAACGAGACGAGGGAATTCGACATTGTTTTC  588
            ||||| || ||||||||||| |||| |||||||||||||||||||||||||||| | || 
Sbjct  4    CATTTTGCCGAGATACAAACTCTTGGAGCCAACGAGACGAGGGAATTCGACATTATCTTG  63

Query  589  AAAGGAAACTTTAATTATTCAG-CTTTTAGTCCTACCAAGTTAGAG  633
            |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  64   AAAGGAAACTTTAATTATTCAGGCTTT-AGTCCTACCAAGTTAGAG  108



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 88940722075


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5