BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28990.1
Length=2655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887385 jgi|Araly1|887385|Al_scaffold_0190_1 460 2e-128
> Ahg887385 jgi|Araly1|887385|Al_scaffold_0190_1
Length=318
Score = 460 bits (249), Expect = 2e-128
Identities = 293/314 (93%), Gaps = 4/314 (1%)
Strand=Plus/Plus
Query 2323 AACCGTCCTATAATCCAGCAATCCCGTGAAAAGCCTCACATAGTGGAATGGGTCAGTTTT 2382
||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 7 AACCGCCCTATAATTCAGCAATCCCGTGAAAAACCTCACTTAGTGGAATGGGTCAGTTTT 66
Query 2383 ATGATAACAAAAGGAGATCTTAGAAGTATTATGGATCCAAACCTCCACCA-AGATTATGA 2441
|||||||| ||||||||| |||||| |||||||||||||||||||||||| | |||||||
Sbjct 67 ATGATAACCAAAGGAGATATTAGAAATATTATGGATCCAAACCTCCACCACA-ATTATGA 125
Query 2442 TATTGGTTCTGTCTGGAAGGCCATTGAATTAGCAATGTCATGTGTGAGTCTTTCTTCTGC 2501
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 126 CATTGGTTCTGTCTGGAAGGCCATTGAAATAGCAATGTCATGTGTGAATCTTTCTTCTAC 185
Query 2502 AAGACGACCAAACATGTCTCGAG-TTGTGAATGAATTAAAAGAATGTCTTATATCCGAAA 2560
|||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct 186 AAGACGACCAAACATGTCTC-AGGTTGTGAATGAATTAAAAGAATGTCTGATATCCGAAA 244
Query 2561 CCTCTAGGATAGGTGAGGGACGAGACATGGAATCAAAAGGTTCAATGGAATTCAGCAGAG 2620
||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||
Sbjct 245 CCTCTAGGATAGGAGAGGGACGAGACATGGAATCTAAAGGTTCAATGGACTACAGCAAAG 304
Query 2621 ACATTTATAATGAG 2634
||||||||||||||
Sbjct 305 ACATTTATAATGAG 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100139254105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5