BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29010.1
Length=3701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1 1962 0.0
Ahg887748 jgi|Araly1|887748|Al_scaffold_0109_2 584 1e-165
> Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1
Length=3408
Score = 1962 bits (1062), Expect = 0.0
Identities = 1361/1501 (91%), Gaps = 37/1501 (2%)
Strand=Plus/Plus
Query 54 ATTCGACATGATTTTTATGTCGCCTCTTACCAGAATTCATTAACTTGGATTGCGGGTAAC 113
|||||||||||| ||||| || |||||||||||||||||| ||||| |||||||| | ||
Sbjct 24 ATTCGACATGATCTTTATCTCACCTCTTACCAGAATTCATCAACTTAGATTGCGGTTTAC 83
Query 114 ACCCTGCGGTATCGCCTTATACCGAACCATTAACAAAC-TTAACATACCTATCCGACGCT 172
|||| |||||||| |||||||||||||||||||| ||| ||||||||| ||||||| ||
Sbjct 84 ACCCCGCGGTATCTCCTTATACCGAACCATTAAC-AACATTAACATACATATCCGATGCC 142
Query 173 AACTTCACCCAAGGTGGTCAAAGTGGAAGAGTCCAAAAGGTTTGGGAAGAAGCTTATCAG 232
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 143 AACTTCACTCAAGGTGGTCAAAGTGGTAGAGTCCAAAAGATTTGGGAAGAAGCTTATAAG 202
Query 233 CCATTCACAGTTCTAAGATACTTTCCGGATGGAATACGAAACTGCTATAACTTGAGGGTC 292
|||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||
Sbjct 203 CCATTCACAGTTCTAAGATATTTTCCAGACGGAATACGAAACTGCTATAACTTAAGGGTC 262
Query 293 ACTCCATCCACAAAA-TATCTTATCAAAGCTCTCTTTCTCTATGGAAATTATGACGGGCT 351
|||||||||| |||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 263 ACTCCATCCA-AAAAGTATCTTATCAAAGCTCTCTTTCTCTACGGAAACTACGACGGGCT 321
Query 352 TAACAATGCCCCGATATTCGATCTGTATCTAGGTCCTAACATATGGACAACGGTCGATTT 411
|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 322 TAACAATGGCCCGATATTTGATCTATATCTAGGTCCTAACATATGGACAACGGTCGATTT 381
Query 412 GAAAAGCTCTTTACTTTCTCAAACGGAAGAGATCATACACATCACAAAGTCAAGCTCTTT 471
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GAAAAGCTCATTACTTTCTCAAACGGAAGAGATCATACACATCACAAAGTCAAGCTCTTT 441
Query 472 GGAGATTTGTCTTGTTAAAACAGGGAAGACTACACCAATCATCTCAGCCTTGGAACTAAG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GGAGATTTGTCTTGTTAAAACAGGGAAGACTACACCAATCATCTCAGCCTTGGAACTAAG 501
Query 532 ACCTTTGAGAGATGACATTTACATTACTCAAATTGGTTCCTTGAAGCTCTTAAAACGCTA 591
||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 502 ACCTTTGAGAGATGACACTTACATCACTCAAAATGGTTCCTTAAAGCTCTTAAAACGCTA 561
Query 592 TTATGCTAGCGATTTTCTCGGTCCTTCGATTCGGTAATTTAACTTTACTTGCTTTACAAG 651
|| |||||| ||||| ||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 562 CTACGCTAGCAATTTTTTCGGTCCTTCGATTCGGTAATTTAACTTTGCTTACTTTCCAAG 621
Query 652 AAACAGAGTTTTGTAATTTTGTTAATACAAATAAAGGTTTGGTAATTGTTGTTTAATATT 711
||||||| | ||||||||||| ||||||||||||| | |||||| |||| | ||
Sbjct 622 AAACAGA-----G---TTTTGTTAATAAAAATAAAGGTTTGATCATTGTTTTTTATTGTT 673
Query 712 CAGGTATCCGTCAGATGTATATGATCGTGAATGGAAGCCAATAAGTCTTTCGTTTGGCTT 771
||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 674 CAGGTATCCTTTAGATATATATGATCGTGAGTGGAAGCCAATAAGTCTTTCGTTTGGCTT 733
Query 772 GAATTTCGTAAACACAAGTCTCAGTGTGAACTCTTCCACTCCTTATGAGCTACCACAAGA 831
|| |||| ||||||| ||||||| ||| || || || ||||||||| |||||||||||||
Sbjct 734 GACTTTCATAAACACTAGTCTCAATGTAAATTCCTCTACTCCTTATCAGCTACCACAAGA 793
Query 832 AGT-ATCTCAAAGGCAATCATTAACGAAAACGTGACTGAGAAGTTATCTTTCGACTGGTA 890
| | |||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 794 ACTAATCTCAAAGGCAATCACTAACAAAAATGTGACTGAGAAGTTATCTTTCGACTGGTA 853
Query 891 TGTCGATAACCGCGAGGATCAAGCTCTCATATACCTTCATTTCGCTGAGATTCAATCACT 950
||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||| ||||
Sbjct 854 TGTCGATAACCGCGAAGATCAAGCTCTCATCTACCTACATTTTGCTGAGATTCAAACACT 913
Query 951 TAAAGGCAATGACACAAGAGAGTTCGACATTATATGGAAAGGGAACGATGGAAACATTAC 1010
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 914 TAAAGGCAATGACACAAGAGAGTTTGACATTATATGGAAAGGAAACGATGGAAACATTAC 973
Query 1011 CATTTCAGCTTATCGCCCTTCGAAGTTACAGCTAGAGACTCTATACAACACATCGCCTAT 1070
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 974 CATTTCAGCTTATCGCCCTTCGAAGTTTCAGCTAGAGACTTTATACAACACATCGCCTAT 1033
Query 1071 GAAATGTAGGTTTATGCAATGTACAGTGGAACTTGTTATGACTAAGAGCTCAACTCTCCC 1130
|||||||| ||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1034 GAAATGTAAGTTTATGCAATGTACAGTGGAGCTGGTTATGACTAAGAGCTCAACGCTCCC 1093
Query 1131 ACCAATGATCAATGCTATGGAAGCTTACCAAATTATAGAGTTCTCAGATGCAGAAACTAA 1190
|||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 1094 ACCAATGATCAATGCTATGGAAGCTTACCAGATTATTGAGTTCCCGGATGCAGAAACTAA 1153
Query 1191 TCCAGAGGATGGTTAGTCAATCTTCACTACTAATGAattttcgcgatatttttatatgtt 1250
||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||
Sbjct 1154 TCCAGAGGATGGTTAGTCAATCTTCACTAGTATTGAATTTTTGCGATATTTACCTATGTT 1213
Query 1251 tcggtatattta-ttttggttttatt-tGCAGTCGTTGCGGTCCAGAATATTAGAGCTGC 1308
|| |||| | || ||||||||||||| | ||||||||| |||||||||| || ||||| |
Sbjct 1214 TCTGTAT-TCTAATTTTGGTTTTATTGT-CAGTCGTTGTGGTCCAGAATGTTCGAGCTAC 1271
Query 1309 TTATGAATTGAGTAGAATAGACTGGCAAGGAGATCCGTGTGTTCCTCGGTTGTTCAAATG 1368
||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1272 TTACGAATTGAGTAAAATCGACTGGCAAGGAGATCCGTGTGTTCCTCGATTGTTCAAATG 1331
Query 1369 GGAGGGGATAAATTGCAGCTACACAAATACTTCTATTCCACCAAGAATCATTTCCTTGTA 1428
|||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||
Sbjct 1332 GGAGGGAATAAATTGCAGCAACACAAATGCTTCTATTCCACCAAGAATCATATCCTTGTA 1391
Query 1429 AGACTATTTAATAACAGATTTGATTACTATTAAAAATCAGTGTTTAAATCTCTAAAATTG 1488
||| |||||||| |||||||| | | | | ||| | | | || |||||| |
Sbjct 1392 AGAATATTTAATTACAGATTT-A--A-T-T-AAA--T-A-T--------CT-TAAAAT-G 1431
Query 1489 TGTGTTATGTTCTTATAACCAGAGACTTATCATCAAGTGGACTAAATGGGGTCATAGCAC 1548
|||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1432 TGTGTTCTGTTTTTATAACCAGAGACTTATCATCAAGTGGACTAAAGGGGGTCATAGCAC 1491
Query 1549 C 1549
|
Sbjct 1492 C 1492
Score = 1092 bits (591), Expect = 0.0
Identities = 759/836 (91%), Gaps = 28/836 (3%)
Strand=Plus/Plus
Query 1646 ATTAATTGTTATCGTAATCGATTGATAGGGACTTATCGAATAACAATCTAACTGGAGGAG 1705
||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 1527 ATTTATTGTTATCGTAATCGACTAATAGGGACTTATCGAATAACAATCTAACTGGAGGGG 1586
Query 1706 TGCCTGAATTTCTAGCCAACATGGAATCATTGTTGATCATGTGAGTTTATTTCATGGTAA 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1587 TGCCTGAATTTCTAGCCAACATGGAATCATTGTTGATCATGTGAGTTTATTTCATGGCAA 1646
Query 1766 ACAATAAGTGATCATGA-TTTCTTGCACCAGATTTATGGATGATGTTTATATATATCATA 1824
||||||||||||||| | ||||||||||||||||||||||||||| | |||||| ||||
Sbjct 1647 ACAATAAGTGATCAT-ACTTTCTTGCACCAGATTTATGGATGATG--TGTATATACCATA 1703
Query 1825 ATGTTCTTATCTGTTTTGACAGAAACTTAGGTTGGAATAGCTTAACCGGTCCAATTCCTC 1884
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1704 ATGTTCTTCTCTGTTTTGACAGAAACTTAGGTTGGAATAGCTTAACCGGTCCGATTCCTC 1763
Query 1885 GAGCCCTTCACAATAGAGAAAAGAAAGGGCTAAAATTGGTGTAAGATTTCTCCTTAATGG 1944
|||||||| |||||||||||||||||| |||||||||||||||| || | |
Sbjct 1764 TAGCCCTTCGCAATAGAGAAAAGAAAGGACTAAAATTGGTGTAAG--TT-T-C------- 1812
Query 1945 ttttttttGTTCGTGATGATTTTGCGTATTCAATAACATTCTTGTTCTATAGTGTTCAAG 2004
|||| | ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1813 ------TTGTCCCTGATGATTTTGCGTATTCAATAACATTCTTGTTATTTAGTGTTCAAG 1866
Query 2005 GAAACCCAAATCTATGTCTCTCTGGCTCATGCAAGAACACGAAAGTCCTAGTGCCGGTTT 2064
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1867 GAAACCCAAATCTATGTCTCTCTGACTCATGCAAGAACAAGAAAGTCCTAGTGCCGGTTT 1926
Query 2065 TTGCGTCTCTTGCTTCATTGGCGGCTCTTATCGCTTTGTTGGCTCTCATTTTTGTTTTGA 2124
|||| || ||||||||| |||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1927 TTGCATCCCTTGCTTCAATGGCGGCTCTTATCGCCTTGTTGGGTCTCATTTTTGTTTTGA 1986
Query 2125 GAAGGAAAAAGCCCGTATCAAAAGGTATAAATAAATAGATTCATCAATCAAGAAGTACAT 2184
||| |||||||||| |||||||||||||| || ||| | ||||||||||| | |||
Sbjct 1987 GAAAGAAAAAGCCCTTATCAAAAGGTATA--TAGATA--T--ATCAATCAAGATGCACAC 2040
Query 2185 AAGGGCTTAATACTCTGTAAAGTT-CATGGTATGTAGTAATGGCATTACTTATATGGCCT 2243
|| ||||||||||||||| ||||| |||||||| || |||||||||| |||||||| |
Sbjct 2041 AAAGGCTTAATACTCTGTTAAGTTTCATGGTATATAATAATGGCATTGCTTATATGATTT 2100
Query 2244 TTCCATATACAGTTGCTACACGGGAGTTACCAAGAAAGTCATCAATCTTTGCCAAAAAGA 2303
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2101 TTCCATATACAGTTGCTACACGCGAGTTACCAAGAAAGTCATCTATCTTTGCCAAAAAGA 2160
Query 2304 AAAAGTTCACTTATTCGGAAGTCGTTGAGCTTACGAATAACTTCAGAAGAGTTCTTGGAG 2363
||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 2161 AAAAGTTCACTTATTTGGAAGTCGTTGAGCTAACGGATAACTTCAAAAGAGTTCTTGGAG 2220
Query 2364 AAGGAGGCTTCGGAGTTGTCTACCATGGTTCTTTGAGTGATACCGAACAAGTAGCGGTTA 2423
||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 2221 AAGGAGGATTTGGAGTTGTCTACCACGGTTCTTTGAGTGATACCGAACCAGTAGCGGTTA 2280
Query 2424 AAGTTCTTTCCGAGTCATCCGTTCAAGGCTATAAGGAATTTAAGGCAGAGGTATGT 2479
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2281 AAGTTCTTTCCGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGAGGTATGT 2336
Score = 878 bits (475), Expect = 0.0
Identities = 704/807 (87%), Gaps = 45/807 (6%)
Strand=Plus/Plus
Query 2905 ACATTATAAAGTTCTTCAACTTCATATATCTT-CCAATCCCTTTTTGGCCTACCAACTTT 2963
||||||| |||| ||| ||||||||||| ||| || || |||||||||||||||||| |
Sbjct 2637 ACATTATGAAGTACTTAAACTTCATATA-CTTACCCATTCCTTTTTGGCCTACCAAC--T 2693
Query 2964 GCTATAATCACTCACTCAACATGGATACAATTTTTTAACAATAGGTTTAGAGTATTTGCA 3023
|| ||| | || |||||||| || | ||||||| | ||||||||||||| ||||||
Sbjct 2694 -ATACAAT-AATCGCTCAACATAGAGATGATTTTTTGTCCATAGGTTTAGAGTGTTTGCA 2751
Query 3024 TGTTGGGTGTGAGCCACCAATGGTTCATAGAGATGTCAAAAGTACGAACATACTATTAGA 3083
||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 2752 TGTTGGGTGTGAGCCGCCAATGGTTCATAGAGATGTCAAAACTACGAATATACTATTAGA 2811
Query 3084 -TAATCGTTTCGAAG-CAAACTCGCGGATTTTGGACTTTCAAGATCGTTTTCTGTCGGAG 3141
| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2812 CT-ATCGTTTCGAAGCCAAACTCGCGGATTTTGGACTCTCAAGATCATTTTCTGTCGGAG 2870
Query 3142 CTGAAACTCAAGTGGCAACGGTTGTTGCAGGAACACCCGGATATCTTGATCCTGAGTAAG 3201
||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 2871 CTGAAACTCAAGTGGCAACAGTTGTTGCAGGAACTCCCGTATATCTTGATCCTGAGTAAG 2930
Query 3202 TTCTCTAATTCATAGAC-A-GCTACATAATGTAACTTGAACTTGtttttttCCTTCATTA 3259
|| ||||| |||||||| | | || | |||| |||||||||||||||||||||||||
Sbjct 2931 TTTTCTAACTCATAGACCATGATATGT--TGTATTTTGAACTTGTTTTTTTCCTTCATTA 2988
Query 3260 AGTTCCATAAACTTCAACTTCTT---GCAGATATTACCTAACAAATTGGTTAAACGAGAA 3316
||| ||||||| || ||||| || | |||||||||||||||||||||||||||| |||
Sbjct 2989 AGTCCCATAAAATT-AACTTTTTTTTGTAGATATTACCTAACAAATTGGTTAAACGGGAA 3047
Query 3317 GAGCGACGTCTACAGTTTCGGAATAGTACTCATCGAAATCATCACAAACCGATCAGTGAT 3376
|||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 3048 GAGCGATGTCTATAGTTTTGGCATAGTACTCATCGAAATAATCACAAACCGATCAGTGAT 3107
Query 3377 TGAACTAACCCGAGAAAAAGCTCATATAGCAGAATGGGTAAAGATTCTTATAAGCAGAGG 3436
||| ||||||||| || | |||| |||| | | |||| |||||||
Sbjct 3108 TGAGCTAACCCGA--------TC-----G-AGAA-----AAAGCT-CATATA-GCAGAGG 3146
Query 3437 AGACATCGAAAAAATCGTCGACAC-AAACCTTAATGGAGATTACGACTCAAACACAGTCT 3495
|||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 3147 AGACATTGAAAAAATCGTCGAC-CTAAACCTTAATGGAGATTACGACTCAAACACAATCT 3205
Query 3496 GGAGGATTCTTGAACTAGCAATGTCATGCGTAAGCCACTCTTCATCAGATAGACCAACCA 3555
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3206 GGAGAATTCTTGAACTAGCCATGTCATGCGTAAGCCACTCTTCATCAGATAGACCAACCA 3265
Query 3556 TGTCCAAAGTTGTTAATATACTTAAAGAGTGCTTGCTCTCAGA-AAATTTAAGAACAAGA 3614
|||||||||| |||||||||||||||||||||||| |||| || |||| ||||||| ||
Sbjct 3266 TGTCCAAAGTAGTTAATATACTTAAAGAGTGCTTGATCTCTGAGAAATC-AAGAACAGGA 3324
Query 3615 CAGATTCATCAAGATAATGACGATGACTCAAAGAACTCAGACTTGACTTTAAATTTCGGA 3674
|| |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||
Sbjct 3325 CAAATTCATCAAGATGATGA---TGACTCAAAGAACTCAGACTTGACTATAAATTTCGGA 3381
Query 3675 ACTGAAGTAACCCCTCTTGCACGCTAG 3701
|| ||||||||||||||||||||||||
Sbjct 3382 ACCGAAGTAACCCCTCTTGCACGCTAG 3408
Score = 254 bits (137), Expect = 4e-66
Identities = 171/186 (92%), Gaps = 7/186 (4%)
Strand=Plus/Plus
Query 2553 AAAAGGTGGAGCTTCT-TCTAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTAC 2611
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2354 AAAAGGTGGAGCTTCTAT-TAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTAC 2412
Query 2612 TGTGATGAAGGAGGCCATTTAGCACTTATATATGAGTACATGGCTAATGGAGACCTTAAA 2671
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 2413 TGTGATGAAGGAGGTCATTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAA 2472
Query 2672 CAACATCTATCAGGTAATTAAACACTAATTATACTTGACATGTCTTTATTCGTCTTTGAA 2731
|||||| ||||||||||||||||| |||| | |||| |||||||||| |||||||||
Sbjct 2473 CAACATTTATCAGGTAATTAAACATTAAT-AG--TTGA--TGTCTTTATTTGTCTTTGAA 2527
Query 2732 TCAATT 2737
||||||
Sbjct 2528 TCAATT 2533
Score = 161 bits (87), Expect = 3e-38
Identities = 106/114 (93%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 2764 ATTTAGCATTTTTATTTACAGGAGAAT-CTTCTGGACCTACTTTGAAATGGGCTAGTAGA 2822
|||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2531 ATTTAGCATTTTCATTTACAGGAGAATGC-TCTGGACCTACTTTGAAATGGGCTAGTAGA 2589
Query 2823 CTCAAAATTGCTATCGAGGCGGCACAAGGTTTAAT-CTTGCTAACTTTAACATT 2875
|| ||||||||||| |||||||||||||||| ||| ||||||||||||| ||||
Sbjct 2590 CTAAAAATTGCTATTGAGGCGGCACAAGGTT-AATTCTTGCTAACTTTA-CATT 2641
> Ahg887748 jgi|Araly1|887748|Al_scaffold_0109_2
Length=1071
Score = 584 bits (316), Expect = 1e-165
Identities = 361/383 (94%), Gaps = 1/383 (0%)
Strand=Plus/Plus
Query 821 CTACCACAAGAAGT-ATCTCAAAGGCAATCATTAACGAAAACGTGACTGAGAAGTTATCT 879
|||||||||||| | |||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 1 CTACCACAAGAACTAATCTCAAAGGCAATCACTAACAAAAATGTGACTGAGAAGTTATCT 60
Query 880 TTCGACTGGTATGTCGATAACCGCGAGGATCAAGCTCTCATATACCTTCATTTCGCTGAG 939
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 61 TTCGACTGGTATGTCGATAACCGCGAAGATCAAGCTCTCATCTACCTACATTTTGCTGAG 120
Query 940 ATTCAATCACTTAAAGGCAATGACACAAGAGAGTTCGACATTATATGGAAAGGGAACGAT 999
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 ATTCAAACACTTAAAGGCAATGACACAAGAGAGTTTGACATTATATGGAAAGGAAACGAT 180
Query 1000 GGAAACATTACCATTTCAGCTTATCGCCCTTCGAAGTTACAGCTAGAGACTCTATACAAC 1059
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 181 GGAAACATTACCATTTCAGCTTATCGCCCTTCGAAGTTTCAGCTAGAGACTTTATACAAC 240
Query 1060 ACATCGCCTATGAAATGTAGGTTTATGCAATGTACAGTGGAACTTGTTATGACTAAGAGC 1119
||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 241 ACATCGCCTATGAAATGTAAGTTTATGCAATGTACAGTGGAGCTGGTTATGACTAAGAGC 300
Query 1120 TCAACTCTCCCACCAATGATCAATGCTATGGAAGCTTACCAAATTATAGAGTTCTCAGAT 1179
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| | |||
Sbjct 301 TCAACGCTCCCACCAATGATCAATGCTATGGAAGCTTACCAGATTATTGAGTTCCCGGAT 360
Query 1180 GCAGAAACTAATCCAGAGGATGG 1202
|||||||||||||||||||||||
Sbjct 361 GCAGAAACTAATCCAGAGGATGG 383
Score = 339 bits (183), Expect = 1e-91
Identities = 209/222 (94%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 2254 AGTTGCTACACGGGAGTTACCAAGAAAGTCATCAATCTTTGCCAAAAAGAAAAAGTTCAC 2313
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 663 AGTTGCTACACGCGAGTTACCAAGAAAGTCATCTATCTTTGCCAAAAATAAAAAGTTCAC 722
Query 2314 TTATTCGGAAGTCGTTGAGCTTACGAATAACTTCAGAAGAGTTCTTGGAGAAGGAGGCTT 2373
||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||
Sbjct 723 TTATTTGGAAGTCGTTGAGCTAACGGATAACTTCAAAAGAGTTCTTGGAGAAGGAGGATT 782
Query 2374 CGGAGTTGTCTACCATGGTTCTTTGAGTGATACCGAACAAGTAGCGGTTAAAGTTCTTTC 2433
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 783 TGGAGTTGTCTACCACGGTTCTTTGAGTGATACCGAACCAGTAGCGGTTAAAGTTCTTTC 842
Query 2434 CGAGTCATCCGTTCAAGGCTATAAGGAATTTAAGGCAGAGGT 2475
||||||||| |||||||||||||| |||||||||||||||||
Sbjct 843 CGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGAGGT 884
Score = 231 bits (125), Expect = 2e-59
Identities = 143/152 (94%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 1997 TGTTCAAGGAAACCCAAATCTATGTCTCTCTGGCTCATGCAAGAACACGAAAGTCCTAGT 2056
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 513 TGTTCAAGGAAACCCAAATCTATGTCTCTCTGACTCATGCAAGAACAAGAAAGTCCTAGT 572
Query 2057 GCCGGTTTTTGCGTCTCTTGCTTCATTGGCGGCTCTTATCGCTTTGTTGGCTCTCATTTT 2116
|||||||||||| || ||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct 573 GCCGGTTTTTGCATCCCTTGCTTCAATGGCGGCTCTTATCGCCTTGTTGGGTCTCATTTT 632
Query 2117 TGTTTTGAGAAGGAAAAAGCCCGTATCAAAAG 2148
||||||||||| |||||||||| |||||||||
Sbjct 633 TGTTTTGAGAAAGAAAAAGCCCTTATCAAAAG 664
Score = 200 bits (108), Expect = 6e-50
Identities = 123/130 (95%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 2556 AGGTGGAGCTTCT-TCTAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTACTGT 2614
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AGGTGGAGCTTCTAT-TAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTACTGT 939
Query 2615 GATGAAGGAGGCCATTTAGCACTTATATATGAGTACATGGCTAATGGAGACCTTAAACAA 2674
||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 940 GATGAAGGAGGTCATTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAACAA 999
Query 2675 CATCTATCAG 2684
||| ||||||
Sbjct 1000 CATTTATCAG 1009
Score = 122 bits (66), Expect = 1e-26
Identities = 74/78 (95%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1847 AAACTTAGGTTGGAATAGCTTAACCGGTCCAATTCCTCGAGCCCTTCACAATAGAGAAAA 1906
|||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 435 AAACTTAGGTTGGAATAGCTTAACCGGTCCGATTCCTCTAGCCCTTCGCAATAGAGAAAA 494
Query 1907 GAAAGGGCTAAAATTGGT 1924
|||||| |||||||||||
Sbjct 495 GAAAGGACTAAAATTGGT 512
Score = 97.1 bits (52), Expect = 8e-19
Identities = 61/65 (94%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 2786 AGAAT-CTTCTGGACCTACTTTGAAATGGGCTAGTAGACTCAAAATTGCTATCGAGGCGG 2844
||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1008 AGAATGC-TCTGGACCTACTTTGAAATGGGCTAGTAGACTAAAAATTGCTATTGAGGCGG 1066
Query 2845 CACAA 2849
|||||
Sbjct 1067 CACAA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139823523202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5