BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29010.1 Length=3701 Score E Sequences producing significant alignments: (Bits) Value Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1 1962 0.0 Ahg887748 jgi|Araly1|887748|Al_scaffold_0109_2 584 1e-165 > Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1 Length=3408 Score = 1962 bits (1062), Expect = 0.0 Identities = 1361/1501 (91%), Gaps = 37/1501 (2%) Strand=Plus/Plus Query 54 ATTCGACATGATTTTTATGTCGCCTCTTACCAGAATTCATTAACTTGGATTGCGGGTAAC 113 |||||||||||| ||||| || |||||||||||||||||| ||||| |||||||| | || Sbjct 24 ATTCGACATGATCTTTATCTCACCTCTTACCAGAATTCATCAACTTAGATTGCGGTTTAC 83 Query 114 ACCCTGCGGTATCGCCTTATACCGAACCATTAACAAAC-TTAACATACCTATCCGACGCT 172 |||| |||||||| |||||||||||||||||||| ||| ||||||||| ||||||| || Sbjct 84 ACCCCGCGGTATCTCCTTATACCGAACCATTAAC-AACATTAACATACATATCCGATGCC 142 Query 173 AACTTCACCCAAGGTGGTCAAAGTGGAAGAGTCCAAAAGGTTTGGGAAGAAGCTTATCAG 232 |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| || Sbjct 143 AACTTCACTCAAGGTGGTCAAAGTGGTAGAGTCCAAAAGATTTGGGAAGAAGCTTATAAG 202 Query 233 CCATTCACAGTTCTAAGATACTTTCCGGATGGAATACGAAACTGCTATAACTTGAGGGTC 292 |||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||| Sbjct 203 CCATTCACAGTTCTAAGATATTTTCCAGACGGAATACGAAACTGCTATAACTTAAGGGTC 262 Query 293 ACTCCATCCACAAAA-TATCTTATCAAAGCTCTCTTTCTCTATGGAAATTATGACGGGCT 351 |||||||||| |||| |||||||||||||||||||||||||| ||||| || |||||||| Sbjct 263 ACTCCATCCA-AAAAGTATCTTATCAAAGCTCTCTTTCTCTACGGAAACTACGACGGGCT 321 Query 352 TAACAATGCCCCGATATTCGATCTGTATCTAGGTCCTAACATATGGACAACGGTCGATTT 411 |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 322 TAACAATGGCCCGATATTTGATCTATATCTAGGTCCTAACATATGGACAACGGTCGATTT 381 Query 412 GAAAAGCTCTTTACTTTCTCAAACGGAAGAGATCATACACATCACAAAGTCAAGCTCTTT 471 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 382 GAAAAGCTCATTACTTTCTCAAACGGAAGAGATCATACACATCACAAAGTCAAGCTCTTT 441 Query 472 GGAGATTTGTCTTGTTAAAACAGGGAAGACTACACCAATCATCTCAGCCTTGGAACTAAG 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 GGAGATTTGTCTTGTTAAAACAGGGAAGACTACACCAATCATCTCAGCCTTGGAACTAAG 501 Query 532 ACCTTTGAGAGATGACATTTACATTACTCAAATTGGTTCCTTGAAGCTCTTAAAACGCTA 591 ||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||| Sbjct 502 ACCTTTGAGAGATGACACTTACATCACTCAAAATGGTTCCTTAAAGCTCTTAAAACGCTA 561 Query 592 TTATGCTAGCGATTTTCTCGGTCCTTCGATTCGGTAATTTAACTTTACTTGCTTTACAAG 651 || |||||| ||||| ||||||||||||||||||||||||||||| ||| |||| |||| Sbjct 562 CTACGCTAGCAATTTTTTCGGTCCTTCGATTCGGTAATTTAACTTTGCTTACTTTCCAAG 621 Query 652 AAACAGAGTTTTGTAATTTTGTTAATACAAATAAAGGTTTGGTAATTGTTGTTTAATATT 711 ||||||| | ||||||||||| ||||||||||||| | |||||| |||| | || Sbjct 622 AAACAGA-----G---TTTTGTTAATAAAAATAAAGGTTTGATCATTGTTTTTTATTGTT 673 Query 712 CAGGTATCCGTCAGATGTATATGATCGTGAATGGAAGCCAATAAGTCTTTCGTTTGGCTT 771 ||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 674 CAGGTATCCTTTAGATATATATGATCGTGAGTGGAAGCCAATAAGTCTTTCGTTTGGCTT 733 Query 772 GAATTTCGTAAACACAAGTCTCAGTGTGAACTCTTCCACTCCTTATGAGCTACCACAAGA 831 || |||| ||||||| ||||||| ||| || || || ||||||||| ||||||||||||| Sbjct 734 GACTTTCATAAACACTAGTCTCAATGTAAATTCCTCTACTCCTTATCAGCTACCACAAGA 793 Query 832 AGT-ATCTCAAAGGCAATCATTAACGAAAACGTGACTGAGAAGTTATCTTTCGACTGGTA 890 | | |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| Sbjct 794 ACTAATCTCAAAGGCAATCACTAACAAAAATGTGACTGAGAAGTTATCTTTCGACTGGTA 853 Query 891 TGTCGATAACCGCGAGGATCAAGCTCTCATATACCTTCATTTCGCTGAGATTCAATCACT 950 ||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||| |||| Sbjct 854 TGTCGATAACCGCGAAGATCAAGCTCTCATCTACCTACATTTTGCTGAGATTCAAACACT 913 Query 951 TAAAGGCAATGACACAAGAGAGTTCGACATTATATGGAAAGGGAACGATGGAAACATTAC 1010 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 914 TAAAGGCAATGACACAAGAGAGTTTGACATTATATGGAAAGGAAACGATGGAAACATTAC 973 Query 1011 CATTTCAGCTTATCGCCCTTCGAAGTTACAGCTAGAGACTCTATACAACACATCGCCTAT 1070 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 974 CATTTCAGCTTATCGCCCTTCGAAGTTTCAGCTAGAGACTTTATACAACACATCGCCTAT 1033 Query 1071 GAAATGTAGGTTTATGCAATGTACAGTGGAACTTGTTATGACTAAGAGCTCAACTCTCCC 1130 |||||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 1034 GAAATGTAAGTTTATGCAATGTACAGTGGAGCTGGTTATGACTAAGAGCTCAACGCTCCC 1093 Query 1131 ACCAATGATCAATGCTATGGAAGCTTACCAAATTATAGAGTTCTCAGATGCAGAAACTAA 1190 |||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| Sbjct 1094 ACCAATGATCAATGCTATGGAAGCTTACCAGATTATTGAGTTCCCGGATGCAGAAACTAA 1153 Query 1191 TCCAGAGGATGGTTAGTCAATCTTCACTACTAATGAattttcgcgatatttttatatgtt 1250 ||||||||||||||||||||||||||||| || |||||||| ||||||||| |||||| Sbjct 1154 TCCAGAGGATGGTTAGTCAATCTTCACTAGTATTGAATTTTTGCGATATTTACCTATGTT 1213 Query 1251 tcggtatattta-ttttggttttatt-tGCAGTCGTTGCGGTCCAGAATATTAGAGCTGC 1308 || |||| | || ||||||||||||| | ||||||||| |||||||||| || ||||| | Sbjct 1214 TCTGTAT-TCTAATTTTGGTTTTATTGT-CAGTCGTTGTGGTCCAGAATGTTCGAGCTAC 1271 Query 1309 TTATGAATTGAGTAGAATAGACTGGCAAGGAGATCCGTGTGTTCCTCGGTTGTTCAAATG 1368 ||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1272 TTACGAATTGAGTAAAATCGACTGGCAAGGAGATCCGTGTGTTCCTCGATTGTTCAAATG 1331 Query 1369 GGAGGGGATAAATTGCAGCTACACAAATACTTCTATTCCACCAAGAATCATTTCCTTGTA 1428 |||||| |||||||||||| |||||||| |||||||||||||||||||||| |||||||| Sbjct 1332 GGAGGGAATAAATTGCAGCAACACAAATGCTTCTATTCCACCAAGAATCATATCCTTGTA 1391 Query 1429 AGACTATTTAATAACAGATTTGATTACTATTAAAAATCAGTGTTTAAATCTCTAAAATTG 1488 ||| |||||||| |||||||| | | | | ||| | | | || |||||| | Sbjct 1392 AGAATATTTAATTACAGATTT-A--A-T-T-AAA--T-A-T--------CT-TAAAAT-G 1431 Query 1489 TGTGTTATGTTCTTATAACCAGAGACTTATCATCAAGTGGACTAAATGGGGTCATAGCAC 1548 |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1432 TGTGTTCTGTTTTTATAACCAGAGACTTATCATCAAGTGGACTAAAGGGGGTCATAGCAC 1491 Query 1549 C 1549 | Sbjct 1492 C 1492 Score = 1092 bits (591), Expect = 0.0 Identities = 759/836 (91%), Gaps = 28/836 (3%) Strand=Plus/Plus Query 1646 ATTAATTGTTATCGTAATCGATTGATAGGGACTTATCGAATAACAATCTAACTGGAGGAG 1705 ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| | Sbjct 1527 ATTTATTGTTATCGTAATCGACTAATAGGGACTTATCGAATAACAATCTAACTGGAGGGG 1586 Query 1706 TGCCTGAATTTCTAGCCAACATGGAATCATTGTTGATCATGTGAGTTTATTTCATGGTAA 1765 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1587 TGCCTGAATTTCTAGCCAACATGGAATCATTGTTGATCATGTGAGTTTATTTCATGGCAA 1646 Query 1766 ACAATAAGTGATCATGA-TTTCTTGCACCAGATTTATGGATGATGTTTATATATATCATA 1824 ||||||||||||||| | ||||||||||||||||||||||||||| | |||||| |||| Sbjct 1647 ACAATAAGTGATCAT-ACTTTCTTGCACCAGATTTATGGATGATG--TGTATATACCATA 1703 Query 1825 ATGTTCTTATCTGTTTTGACAGAAACTTAGGTTGGAATAGCTTAACCGGTCCAATTCCTC 1884 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1704 ATGTTCTTCTCTGTTTTGACAGAAACTTAGGTTGGAATAGCTTAACCGGTCCGATTCCTC 1763 Query 1885 GAGCCCTTCACAATAGAGAAAAGAAAGGGCTAAAATTGGTGTAAGATTTCTCCTTAATGG 1944 |||||||| |||||||||||||||||| |||||||||||||||| || | | Sbjct 1764 TAGCCCTTCGCAATAGAGAAAAGAAAGGACTAAAATTGGTGTAAG--TT-T-C------- 1812 Query 1945 ttttttttGTTCGTGATGATTTTGCGTATTCAATAACATTCTTGTTCTATAGTGTTCAAG 2004 |||| | ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1813 ------TTGTCCCTGATGATTTTGCGTATTCAATAACATTCTTGTTATTTAGTGTTCAAG 1866 Query 2005 GAAACCCAAATCTATGTCTCTCTGGCTCATGCAAGAACACGAAAGTCCTAGTGCCGGTTT 2064 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1867 GAAACCCAAATCTATGTCTCTCTGACTCATGCAAGAACAAGAAAGTCCTAGTGCCGGTTT 1926 Query 2065 TTGCGTCTCTTGCTTCATTGGCGGCTCTTATCGCTTTGTTGGCTCTCATTTTTGTTTTGA 2124 |||| || ||||||||| |||||||||||||||| ||||||| ||||||||||||||||| Sbjct 1927 TTGCATCCCTTGCTTCAATGGCGGCTCTTATCGCCTTGTTGGGTCTCATTTTTGTTTTGA 1986 Query 2125 GAAGGAAAAAGCCCGTATCAAAAGGTATAAATAAATAGATTCATCAATCAAGAAGTACAT 2184 ||| |||||||||| |||||||||||||| || ||| | ||||||||||| | ||| Sbjct 1987 GAAAGAAAAAGCCCTTATCAAAAGGTATA--TAGATA--T--ATCAATCAAGATGCACAC 2040 Query 2185 AAGGGCTTAATACTCTGTAAAGTT-CATGGTATGTAGTAATGGCATTACTTATATGGCCT 2243 || ||||||||||||||| ||||| |||||||| || |||||||||| |||||||| | Sbjct 2041 AAAGGCTTAATACTCTGTTAAGTTTCATGGTATATAATAATGGCATTGCTTATATGATTT 2100 Query 2244 TTCCATATACAGTTGCTACACGGGAGTTACCAAGAAAGTCATCAATCTTTGCCAAAAAGA 2303 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 2101 TTCCATATACAGTTGCTACACGCGAGTTACCAAGAAAGTCATCTATCTTTGCCAAAAAGA 2160 Query 2304 AAAAGTTCACTTATTCGGAAGTCGTTGAGCTTACGAATAACTTCAGAAGAGTTCTTGGAG 2363 ||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||| Sbjct 2161 AAAAGTTCACTTATTTGGAAGTCGTTGAGCTAACGGATAACTTCAAAAGAGTTCTTGGAG 2220 Query 2364 AAGGAGGCTTCGGAGTTGTCTACCATGGTTCTTTGAGTGATACCGAACAAGTAGCGGTTA 2423 ||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 2221 AAGGAGGATTTGGAGTTGTCTACCACGGTTCTTTGAGTGATACCGAACCAGTAGCGGTTA 2280 Query 2424 AAGTTCTTTCCGAGTCATCCGTTCAAGGCTATAAGGAATTTAAGGCAGAGGTATGT 2479 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 2281 AAGTTCTTTCCGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGAGGTATGT 2336 Score = 878 bits (475), Expect = 0.0 Identities = 704/807 (87%), Gaps = 45/807 (6%) Strand=Plus/Plus Query 2905 ACATTATAAAGTTCTTCAACTTCATATATCTT-CCAATCCCTTTTTGGCCTACCAACTTT 2963 ||||||| |||| ||| ||||||||||| ||| || || |||||||||||||||||| | Sbjct 2637 ACATTATGAAGTACTTAAACTTCATATA-CTTACCCATTCCTTTTTGGCCTACCAAC--T 2693 Query 2964 GCTATAATCACTCACTCAACATGGATACAATTTTTTAACAATAGGTTTAGAGTATTTGCA 3023 || ||| | || |||||||| || | ||||||| | ||||||||||||| |||||| Sbjct 2694 -ATACAAT-AATCGCTCAACATAGAGATGATTTTTTGTCCATAGGTTTAGAGTGTTTGCA 2751 Query 3024 TGTTGGGTGTGAGCCACCAATGGTTCATAGAGATGTCAAAAGTACGAACATACTATTAGA 3083 ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 2752 TGTTGGGTGTGAGCCGCCAATGGTTCATAGAGATGTCAAAACTACGAATATACTATTAGA 2811 Query 3084 -TAATCGTTTCGAAG-CAAACTCGCGGATTTTGGACTTTCAAGATCGTTTTCTGTCGGAG 3141 | |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 2812 CT-ATCGTTTCGAAGCCAAACTCGCGGATTTTGGACTCTCAAGATCATTTTCTGTCGGAG 2870 Query 3142 CTGAAACTCAAGTGGCAACGGTTGTTGCAGGAACACCCGGATATCTTGATCCTGAGTAAG 3201 ||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| Sbjct 2871 CTGAAACTCAAGTGGCAACAGTTGTTGCAGGAACTCCCGTATATCTTGATCCTGAGTAAG 2930 Query 3202 TTCTCTAATTCATAGAC-A-GCTACATAATGTAACTTGAACTTGtttttttCCTTCATTA 3259 || ||||| |||||||| | | || | |||| ||||||||||||||||||||||||| Sbjct 2931 TTTTCTAACTCATAGACCATGATATGT--TGTATTTTGAACTTGTTTTTTTCCTTCATTA 2988 Query 3260 AGTTCCATAAACTTCAACTTCTT---GCAGATATTACCTAACAAATTGGTTAAACGAGAA 3316 ||| ||||||| || ||||| || | |||||||||||||||||||||||||||| ||| Sbjct 2989 AGTCCCATAAAATT-AACTTTTTTTTGTAGATATTACCTAACAAATTGGTTAAACGGGAA 3047 Query 3317 GAGCGACGTCTACAGTTTCGGAATAGTACTCATCGAAATCATCACAAACCGATCAGTGAT 3376 |||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 3048 GAGCGATGTCTATAGTTTTGGCATAGTACTCATCGAAATAATCACAAACCGATCAGTGAT 3107 Query 3377 TGAACTAACCCGAGAAAAAGCTCATATAGCAGAATGGGTAAAGATTCTTATAAGCAGAGG 3436 ||| ||||||||| || | |||| |||| | | |||| ||||||| Sbjct 3108 TGAGCTAACCCGA--------TC-----G-AGAA-----AAAGCT-CATATA-GCAGAGG 3146 Query 3437 AGACATCGAAAAAATCGTCGACAC-AAACCTTAATGGAGATTACGACTCAAACACAGTCT 3495 |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||| Sbjct 3147 AGACATTGAAAAAATCGTCGAC-CTAAACCTTAATGGAGATTACGACTCAAACACAATCT 3205 Query 3496 GGAGGATTCTTGAACTAGCAATGTCATGCGTAAGCCACTCTTCATCAGATAGACCAACCA 3555 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3206 GGAGAATTCTTGAACTAGCCATGTCATGCGTAAGCCACTCTTCATCAGATAGACCAACCA 3265 Query 3556 TGTCCAAAGTTGTTAATATACTTAAAGAGTGCTTGCTCTCAGA-AAATTTAAGAACAAGA 3614 |||||||||| |||||||||||||||||||||||| |||| || |||| ||||||| || Sbjct 3266 TGTCCAAAGTAGTTAATATACTTAAAGAGTGCTTGATCTCTGAGAAATC-AAGAACAGGA 3324 Query 3615 CAGATTCATCAAGATAATGACGATGACTCAAAGAACTCAGACTTGACTTTAAATTTCGGA 3674 || |||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| Sbjct 3325 CAAATTCATCAAGATGATGA---TGACTCAAAGAACTCAGACTTGACTATAAATTTCGGA 3381 Query 3675 ACTGAAGTAACCCCTCTTGCACGCTAG 3701 || |||||||||||||||||||||||| Sbjct 3382 ACCGAAGTAACCCCTCTTGCACGCTAG 3408 Score = 254 bits (137), Expect = 4e-66 Identities = 171/186 (92%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 2553 AAAAGGTGGAGCTTCT-TCTAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTAC 2611 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 2354 AAAAGGTGGAGCTTCTAT-TAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTAC 2412 Query 2612 TGTGATGAAGGAGGCCATTTAGCACTTATATATGAGTACATGGCTAATGGAGACCTTAAA 2671 |||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||| Sbjct 2413 TGTGATGAAGGAGGTCATTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAA 2472 Query 2672 CAACATCTATCAGGTAATTAAACACTAATTATACTTGACATGTCTTTATTCGTCTTTGAA 2731 |||||| ||||||||||||||||| |||| | |||| |||||||||| ||||||||| Sbjct 2473 CAACATTTATCAGGTAATTAAACATTAAT-AG--TTGA--TGTCTTTATTTGTCTTTGAA 2527 Query 2732 TCAATT 2737 |||||| Sbjct 2528 TCAATT 2533 Score = 161 bits (87), Expect = 3e-38 Identities = 106/114 (93%), Gaps = 5/114 (4%) Strand=Plus/Plus Query 2764 ATTTAGCATTTTTATTTACAGGAGAAT-CTTCTGGACCTACTTTGAAATGGGCTAGTAGA 2822 |||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 2531 ATTTAGCATTTTCATTTACAGGAGAATGC-TCTGGACCTACTTTGAAATGGGCTAGTAGA 2589 Query 2823 CTCAAAATTGCTATCGAGGCGGCACAAGGTTTAAT-CTTGCTAACTTTAACATT 2875 || ||||||||||| |||||||||||||||| ||| ||||||||||||| |||| Sbjct 2590 CTAAAAATTGCTATTGAGGCGGCACAAGGTT-AATTCTTGCTAACTTTA-CATT 2641 > Ahg887748 jgi|Araly1|887748|Al_scaffold_0109_2 Length=1071 Score = 584 bits (316), Expect = 1e-165 Identities = 361/383 (94%), Gaps = 1/383 (0%) Strand=Plus/Plus Query 821 CTACCACAAGAAGT-ATCTCAAAGGCAATCATTAACGAAAACGTGACTGAGAAGTTATCT 879 |||||||||||| | |||||||||||||||| |||| |||| |||||||||||||||||| Sbjct 1 CTACCACAAGAACTAATCTCAAAGGCAATCACTAACAAAAATGTGACTGAGAAGTTATCT 60 Query 880 TTCGACTGGTATGTCGATAACCGCGAGGATCAAGCTCTCATATACCTTCATTTCGCTGAG 939 |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||| Sbjct 61 TTCGACTGGTATGTCGATAACCGCGAAGATCAAGCTCTCATCTACCTACATTTTGCTGAG 120 Query 940 ATTCAATCACTTAAAGGCAATGACACAAGAGAGTTCGACATTATATGGAAAGGGAACGAT 999 |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 121 ATTCAAACACTTAAAGGCAATGACACAAGAGAGTTTGACATTATATGGAAAGGAAACGAT 180 Query 1000 GGAAACATTACCATTTCAGCTTATCGCCCTTCGAAGTTACAGCTAGAGACTCTATACAAC 1059 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 181 GGAAACATTACCATTTCAGCTTATCGCCCTTCGAAGTTTCAGCTAGAGACTTTATACAAC 240 Query 1060 ACATCGCCTATGAAATGTAGGTTTATGCAATGTACAGTGGAACTTGTTATGACTAAGAGC 1119 ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| Sbjct 241 ACATCGCCTATGAAATGTAAGTTTATGCAATGTACAGTGGAGCTGGTTATGACTAAGAGC 300 Query 1120 TCAACTCTCCCACCAATGATCAATGCTATGGAAGCTTACCAAATTATAGAGTTCTCAGAT 1179 ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| | ||| Sbjct 301 TCAACGCTCCCACCAATGATCAATGCTATGGAAGCTTACCAGATTATTGAGTTCCCGGAT 360 Query 1180 GCAGAAACTAATCCAGAGGATGG 1202 ||||||||||||||||||||||| Sbjct 361 GCAGAAACTAATCCAGAGGATGG 383 Score = 339 bits (183), Expect = 1e-91 Identities = 209/222 (94%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 2254 AGTTGCTACACGGGAGTTACCAAGAAAGTCATCAATCTTTGCCAAAAAGAAAAAGTTCAC 2313 |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 663 AGTTGCTACACGCGAGTTACCAAGAAAGTCATCTATCTTTGCCAAAAATAAAAAGTTCAC 722 Query 2314 TTATTCGGAAGTCGTTGAGCTTACGAATAACTTCAGAAGAGTTCTTGGAGAAGGAGGCTT 2373 ||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| || Sbjct 723 TTATTTGGAAGTCGTTGAGCTAACGGATAACTTCAAAAGAGTTCTTGGAGAAGGAGGATT 782 Query 2374 CGGAGTTGTCTACCATGGTTCTTTGAGTGATACCGAACAAGTAGCGGTTAAAGTTCTTTC 2433 |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 783 TGGAGTTGTCTACCACGGTTCTTTGAGTGATACCGAACCAGTAGCGGTTAAAGTTCTTTC 842 Query 2434 CGAGTCATCCGTTCAAGGCTATAAGGAATTTAAGGCAGAGGT 2475 ||||||||| |||||||||||||| ||||||||||||||||| Sbjct 843 CGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGAGGT 884 Score = 231 bits (125), Expect = 2e-59 Identities = 143/152 (94%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1997 TGTTCAAGGAAACCCAAATCTATGTCTCTCTGGCTCATGCAAGAACACGAAAGTCCTAGT 2056 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 513 TGTTCAAGGAAACCCAAATCTATGTCTCTCTGACTCATGCAAGAACAAGAAAGTCCTAGT 572 Query 2057 GCCGGTTTTTGCGTCTCTTGCTTCATTGGCGGCTCTTATCGCTTTGTTGGCTCTCATTTT 2116 |||||||||||| || ||||||||| |||||||||||||||| ||||||| ||||||||| Sbjct 573 GCCGGTTTTTGCATCCCTTGCTTCAATGGCGGCTCTTATCGCCTTGTTGGGTCTCATTTT 632 Query 2117 TGTTTTGAGAAGGAAAAAGCCCGTATCAAAAG 2148 ||||||||||| |||||||||| ||||||||| Sbjct 633 TGTTTTGAGAAAGAAAAAGCCCTTATCAAAAG 664 Score = 200 bits (108), Expect = 6e-50 Identities = 123/130 (95%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 2556 AGGTGGAGCTTCT-TCTAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTACTGT 2614 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 881 AGGTGGAGCTTCTAT-TAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTACTGT 939 Query 2615 GATGAAGGAGGCCATTTAGCACTTATATATGAGTACATGGCTAATGGAGACCTTAAACAA 2674 ||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 940 GATGAAGGAGGTCATTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAACAA 999 Query 2675 CATCTATCAG 2684 ||| |||||| Sbjct 1000 CATTTATCAG 1009 Score = 122 bits (66), Expect = 1e-26 Identities = 74/78 (95%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1847 AAACTTAGGTTGGAATAGCTTAACCGGTCCAATTCCTCGAGCCCTTCACAATAGAGAAAA 1906 |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| Sbjct 435 AAACTTAGGTTGGAATAGCTTAACCGGTCCGATTCCTCTAGCCCTTCGCAATAGAGAAAA 494 Query 1907 GAAAGGGCTAAAATTGGT 1924 |||||| ||||||||||| Sbjct 495 GAAAGGACTAAAATTGGT 512 Score = 97.1 bits (52), Expect = 8e-19 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 2786 AGAAT-CTTCTGGACCTACTTTGAAATGGGCTAGTAGACTCAAAATTGCTATCGAGGCGG 2844 ||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1008 AGAATGC-TCTGGACCTACTTTGAAATGGGCTAGTAGACTAAAAATTGCTATTGAGGCGG 1066 Query 2845 CACAA 2849 ||||| Sbjct 1067 CACAA 1071 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 139823523202 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5