BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29020.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497291 jgi|Araly1|497291|fgenesh2_kg.146__3__AT2G29020.1 857 0.0
Ahg481820 jgi|Araly1|481820|fgenesh2_kg.4__880__AT2G29020.1 857 0.0
> Ahg497291 jgi|Araly1|497291|fgenesh2_kg.146__3__AT2G29020.1
Length=683
Score = 857 bits (464), Expect = 0.0
Identities = 648/728 (89%), Gaps = 48/728 (7%)
Strand=Plus/Plus
Query 7 TAGATCTGAATCAGAGAATTGGTAAGTAGTAAGAACCCTAGCTTTAGATTCGTCAGATTC 66
|||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||
Sbjct 1 TAGATCTGAATCAGAGAATTGGTAAGAAGTAAGAACCCTAGC-TAAGATTCGTCCGATTC 59
Query 67 TGATTACTCGAATCAAAGCAGGGTTTTTGACACTAAAAATCCGATCTCGTGAAGTGTGTT 126
|||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||
Sbjct 60 TGATTACTCGAATCAAAGCAGGGTTTTTGAGACT-AAAATCCGATCTTGTGAAGTGGGTT 118
Query 127 TTGCATCGAATCGGAAAATATGAAAGAAGGGAAATCATCGAAGTCGTCGAGTCAACAAGA 186
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 119 TTGCATCGAATCGGAAAATATGAAAGAAGGGAAATCATCGAA---GTCGAATCAACAAGA 175
Query 187 GCAGCATGAACAGATTTATCATCAAAACAGTCACTTGGGTTCTTTCAACTTCGCCAAATT 246
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 176 GCAGCATGAACAGATTTATCACCAAAACAGTCACTTGGGTTCTTTCAAATTCGCCAAATT 235
Query 247 GTTTGATTCTGAAGCTTCCTGGGACAAGGATCAACTGGGAGATGTGTTGCATTGGATCAG 306
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 236 GTTTGATTCTGAAGCTTCCTGGGACAAGGATCAATTGGGAGATGTGTTGCATTGGATCAG 295
Query 307 GCAAGTAGTTGGTTTACTCTGCGGATT-GTTGTGGGGTGCGATACCTTTGGTAGGAGGCA 365
|||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||| |
Sbjct 296 GCAAGTAGTTGGATTACTCTGCGGATTGGTT-TGGGGTGCGATACCTTTGGTTGGAGGGA 354
Query 366 TATGGCTTCTTCTATTTCTTGCAATCTCCTCTGGCATAGTATATGGTTACTATGCATTGG 425
||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 355 TATGGCTACTTCTATTTCTGGCAATCTCGTCTGGCATAGTATACGGTTACTATGCATTGA 414
Query 426 TTCTAAAGATCGATGAAGAAGACTTCGGTGGTCACGCAGCTTTGCTCCAGGACGGTCTAT 485
|||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 415 TTCTAAAGATTGATGAAGAAGACTTTGGTGGTCATGCAGCTCTGCTCCAGGACGGTCTAT 474
Query 486 TTGCTTCTCTAAGTTTATTCCTGCTTGCGTGGATTCTGGTGTATAGCTTGTCTAGCTTCT 545
||||||||||||| ||||||||||||||||||||||||||||||||| | | | ||
Sbjct 475 TTGCTTCTCTAAGCTTATTCCTGCTTGCGTGGATTCTGGTGTATAGC---T-T-G--TC- 526
Query 546 GATAGAGACACAGTATCTCGCGCTTGAGCTGCTCCGTGAAGAAGTTTAGCAGAACGTACC 605
| || | | ||| | | ||| | | ||| |||||||||||||||||||
Sbjct 527 --T--AG---C--T-TCT---GATAGAG--AC-AC-AGAACAAGTTTAGCAGAACGTACC 569
Query 606 TTTCATGGTTTCTCCAATTTACGATGTGCCCTTCATGCTTTTGTTTTCTGAAGATGGGAA 665
|||||| ||||||||| |||||| |||| | | | |||||||||||||||||
Sbjct 570 TTTCATTGTTTCTCCAGTTTACGCTGTG--C--C---C-----TTTTCTGAAGATGGGAA 617
Query 666 CTAGCATTGGTAGATTTTC--ATTTTTCTGATGGAACTTTTGGTTTCCTTTTGTTCTTGT 723
||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 618 CTAGCATTGGTAGATTTTCAAATTTTT-T-ATGGAACTTTTGGTTTCCTTTTGTTCTTGT 675
Query 724 TAATTACT 731
||||||||
Sbjct 676 TAATTACT 683
> Ahg481820 jgi|Araly1|481820|fgenesh2_kg.4__880__AT2G29020.1
Length=683
Score = 857 bits (464), Expect = 0.0
Identities = 648/728 (89%), Gaps = 48/728 (7%)
Strand=Plus/Plus
Query 7 TAGATCTGAATCAGAGAATTGGTAAGTAGTAAGAACCCTAGCTTTAGATTCGTCAGATTC 66
|||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||
Sbjct 1 TAGATCTGAATCAGAGAATTGGTAAGAAGTAAGAACCCTAGC-TAAGATTCGTCCGATTC 59
Query 67 TGATTACTCGAATCAAAGCAGGGTTTTTGACACTAAAAATCCGATCTCGTGAAGTGTGTT 126
|||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||
Sbjct 60 TGATTACTCGAATCAAAGCAGGGTTTTTGAGACT-AAAATCCGATCTTGTGAAGTGGGTT 118
Query 127 TTGCATCGAATCGGAAAATATGAAAGAAGGGAAATCATCGAAGTCGTCGAGTCAACAAGA 186
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 119 TTGCATCGAATCGGAAAATATGAAAGAAGGGAAATCATCGAA---GTCGAATCAACAAGA 175
Query 187 GCAGCATGAACAGATTTATCATCAAAACAGTCACTTGGGTTCTTTCAACTTCGCCAAATT 246
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 176 GCAGCATGAACAGATTTATCACCAAAACAGTCACTTGGGTTCTTTCAAATTCGCCAAATT 235
Query 247 GTTTGATTCTGAAGCTTCCTGGGACAAGGATCAACTGGGAGATGTGTTGCATTGGATCAG 306
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 236 GTTTGATTCTGAAGCTTCCTGGGACAAGGATCAATTGGGAGATGTGTTGCATTGGATCAG 295
Query 307 GCAAGTAGTTGGTTTACTCTGCGGATT-GTTGTGGGGTGCGATACCTTTGGTAGGAGGCA 365
|||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||| |
Sbjct 296 GCAAGTAGTTGGATTACTCTGCGGATTGGTT-TGGGGTGCGATACCTTTGGTTGGAGGGA 354
Query 366 TATGGCTTCTTCTATTTCTTGCAATCTCCTCTGGCATAGTATATGGTTACTATGCATTGG 425
||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 355 TATGGCTACTTCTATTTCTGGCAATCTCGTCTGGCATAGTATACGGTTACTATGCATTGA 414
Query 426 TTCTAAAGATCGATGAAGAAGACTTCGGTGGTCACGCAGCTTTGCTCCAGGACGGTCTAT 485
|||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 415 TTCTAAAGATTGATGAAGAAGACTTTGGTGGTCATGCAGCTCTGCTCCAGGACGGTCTAT 474
Query 486 TTGCTTCTCTAAGTTTATTCCTGCTTGCGTGGATTCTGGTGTATAGCTTGTCTAGCTTCT 545
||||||||||||| ||||||||||||||||||||||||||||||||| | | | ||
Sbjct 475 TTGCTTCTCTAAGCTTATTCCTGCTTGCGTGGATTCTGGTGTATAGC---T-T-G--TC- 526
Query 546 GATAGAGACACAGTATCTCGCGCTTGAGCTGCTCCGTGAAGAAGTTTAGCAGAACGTACC 605
| || | | ||| | | ||| | | ||| |||||||||||||||||||
Sbjct 527 --T--AG---C--T-TCT---GATAGAG--AC-AC-AGAACAAGTTTAGCAGAACGTACC 569
Query 606 TTTCATGGTTTCTCCAATTTACGATGTGCCCTTCATGCTTTTGTTTTCTGAAGATGGGAA 665
|||||| ||||||||| |||||| |||| | | | |||||||||||||||||
Sbjct 570 TTTCATTGTTTCTCCAGTTTACGCTGTG--C--C---C-----TTTTCTGAAGATGGGAA 617
Query 666 CTAGCATTGGTAGATTTTC--ATTTTTCTGATGGAACTTTTGGTTTCCTTTTGTTCTTGT 723
||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 618 CTAGCATTGGTAGATTTTCAAATTTTT-T-ATGGAACTTTTGGTTTCCTTTTGTTCTTGT 675
Query 724 TAATTACT 731
||||||||
Sbjct 676 TAATTACT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5