BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29040.1
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933374 jgi|Araly1|933374|scaffold_401362.1 2230 0.0
Ahg359365 jgi|Araly1|359365|fgenesh1_pg.C_scaffold_146000001 2224 0.0
> Ahg933374 jgi|Araly1|933374|scaffold_401362.1
Length=2164
Score = 2230 bits (1207), Expect = 0.0
Identities = 1377/1460 (94%), Gaps = 8/1460 (1%)
Strand=Plus/Plus
Query 706 GATAACATCTCTAAATCTGAACCAAAAACTCAGAGAAA-TTTTGTATTGAATAAGAATAA 764
||||||| |||| || | |||||||||||||||||||| |||| || |||||| |||||
Sbjct 687 GATAACACCTCTGAACCCGAACCAAAAACTCAGAGAAAGTTTT-CATCGAATAATAATAA 745
Query 765 TACTTCCAAGGCGAAAAACAGAGTAATTTCCAAGAGAAACCAACCTAGTAGAGTCGGTAA 824
||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 746 TACTTCCGAGGCGAAAAACAGAGTAATTTCCAAAAGAAACCAACCTAAAAGAGTCGGAAA 805
Query 825 AGTTATGTTACGGCCAAGAGAAACGCGAAGTAACGATCCATGTAAAGGAAAATATGTGTA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 AGTTATGTTACGGCCAAGAGAAACGCGAAGTAACGATCCATGTAAAGGAAAATATGTGTA 865
Query 885 TATGCATGAGGTGCCAGCTTTGTTTAACGAAGAGCTTCTCAAGAACTGTTGGACATTGAG 944
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 866 TATGCACGAAGTTCCAGCTTTGTTTAACGAAGAGCTTCTCAAGAATTGTTGGACATTGAG 925
Query 945 CAGGTGGACTGATATGTGCGAGTTAACGTCGAATTTCGGGTTAGGCCCTCGTCTACCAAA 1004
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 926 CAGGTGGACCGATATGTGCGAGTTAACATCGAATTTCGGATTAGGCCCTCGTCTACCAAA 985
Query 1005 CATGGAAGGAGTTTCTGGTTGGTATGCCACAAACCAGTTCACATTGGAAGTAATATTCCA 1064
|||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 986 CATGGAGGGAGTTTCTGGTTGGTATGCCACAAACCAATTTACATTAGAAGTGATATTCCA 1045
Query 1065 CAACAGGATGAAGCAGTACAAGTGCTTGACCAAAGACTCGTCTTTAGCTTCTGCGGTGTA 1124
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1046 CAACAGGATGAAGCAATACAAGTGCTTGACCAAAGACTCGTCTCTAGCTTCCGCGGTGTA 1105
Query 1125 TGTTCCTTACTATCCGGGTTTAGACTTGATGCGGTTTTTGTGGGGACCGTTCCCTTTCAT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TGTTCCTTACTATCCGGGTTTAGACTTGATGCGGTTTTTGTGGGGACCGTTCCCTTTCAT 1165
Query 1185 GAGAGATGCTGCCGCGCTTGATCTCATGAAGTGGCTGAGGGAGAGTC-AGGAGTGGAAGA 1243
|||||||||||| ||||||||| | |||||||||||||||||||||| || |||||||||
Sbjct 1166 GAGAGATGCTGCGGCGCTTGATTTGATGAAGTGGCTGAGGGAGAGTCCAG-AGTGGAAGA 1224
Query 1244 GGATGGACGGACGAGATCATTTTATGGTGGCTGGTCGAACCACTTGGGACTTTATGCGTA 1303
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1225 GAATGGACGGCCGAGATCATTTTATGGTGGCTGGTCGTACCACTTGGGACTTTATGCGTA 1284
Query 1304 CACCAGAGAATGAATCCGATTGGGGAAATAGGTTAATGATATTACCGGAAGTAAGAAACA 1363
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1285 CACCTGAGAATGAATCCGATTGGGGCAATAGGTTAATGATCTTACCGGAAGTAAGAAACA 1344
Query 1364 TGACGATGCTACTAATCGAATCAAGCCCATGGAACTACCACGGGTTCGCGGTTCCTTACC 1423
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1345 TGACGATGCTACTAATCGAATCAAGCCCATGGAACTACCACGGATTCGCGGTACCTTACC 1404
Query 1424 CGACCTATTTCCACCCTTCAACATACGCAGAAATCATCCAATGGCAGATGAGAATGAGAA 1483
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1405 CGACCTATTTCCACCCTTCAACCTACGCAGAGATCATCCAATGGCAGATGAGAATGAGAA 1464
Query 1484 GAATTAATCGTCGTTACTTATTCTCATTTGTCGGTGCCCCACGACCAAACCTCGGTGACA 1543
||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||||
Sbjct 1465 GAATTAATCGTCGTTACCTATTCTCCTTTGTCGGTGCACCACGTCCAAATCTCGGTGACA 1524
Query 1544 GCATAAGAACCGAGATCATGGACCAATGCAAAGCTTCAA-AACGAAAATGCAAGCTTCTA 1602
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 1525 GCATAAGAACCGAGATCATGGACCAATGCAAAGCTTCCACAA-GAAAATGCAAGCTTCTA 1583
Query 1603 GAATGCATATCGGGTTCTCAAAAATGCTACAAACCCGACCAAATCATGAAATTCTTTTTG 1662
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1584 GAATGCGTATCGGGTTCTCAAAAATGCTACAAACCCGACCAAATCATGAAATTCTTCTTG 1643
Query 1663 AGCTCAACGTTCTGTCTTCAACCACCAGGTGACTCATACACACGTCGCTCCACTTTTGAC 1722
|||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1644 AGCTCAACATTCTGTCTCCAACCACCCGGTGACTCATACACACGCCGCTCCACTTTCGAC 1703
Query 1723 TCCATCTTAGCAGGTTGTATACCAGTTTTCTTTCATCCGGGATCAGCTTATGCGCAATAC 1782
||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||
Sbjct 1704 TCCATCTTAGCAGGTTGTATACCGGTTTTCTTCCATCCGGGGTCAGCTTACGCTCAATAC 1763
Query 1783 ATTTGGCATTTACCGAAAGATATCGCGAAATACTCTGTTTTTATTCCGGAGAAAAATGTG 1842
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1764 ATTTGGCATTTACCGAAAGATATCGCGAAATACTCTGTTTTTATACCAGAGAAAAACGTG 1823
Query 1843 AAAGAAGGTAAAGTGAGTATAGAGAATGTTTTGAGTAGAATACCGAGGAC-AAAAGTTTT 1901
|||||||||||||||||||||||||||||||||||||| || || ||||| |||| ||||
Sbjct 1824 AAAGAAGGTAAAGTGAGTATAGAGAATGTTTTGAGTAGGATCCCAAGGACGAAAA-TTTT 1882
Query 1902 CGCTATGAGAGAACAAGTGATAAGACTGATACCGAGGTTAATGTATTTTCACCCGTCGAG 1961
||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1883 CGCGATGAGAGAACAAGTGATCAGACTGATACCGAGGTTAATGTATTTTAACCCGTCGAG 1942
Query 1962 TAAGAGTGAAGACACGGGAAGGTTTGAAGATGCATTCGATGTCGCGGTGGAAGGAGTTTT 2021
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1943 TAAGAGCGAAGACACGGGAAGGTTTGAAGATGCATTCGATGTCGCGGTAGAAGGAGTGTT 2002
Query 2022 GGAAAGAGTGGAGGGGTTAAGGAAGAGGATAGAGGAAGGCAAGGAGGAGATTTTTGATTT 2081
||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 2003 GGAAAGAGTGGAGGGATTAAGGAAGAGGATAGAGGAAGGGAAAGAGGAGATTTTCGATTT 2062
Query 2082 TCCGGAGCAGTATTCTTGGAAATATAATGTGTTTGGGAATGTTGAGAGGCATGAGTGGGA 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 TCCGGAGCAGTATTCTTGGAAATATAATGTGTTTGGGAATGTTGAGAGGCATGAGTGGGA 2122
Query 2142 TCCTTACTTCGATCGGCCTT 2161
||||||||||||| ||||||
Sbjct 2123 TCCTTACTTCGATAGGCCTT 2142
Score = 959 bits (519), Expect = 0.0
Identities = 630/681 (93%), Gaps = 17/681 (2%)
Strand=Plus/Plus
Query 1 ATGGCAATGGAGAAGTCTAGCTCAAAGTACAGAACCCAGTTCTGGTACGTGGCAATGGCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21 ATGGCAATGGAGAAGTCTAGCTCAAAGTACAGAACCCAGTTCTGGTACGTTGCAATGGCC 80
Query 61 TCATTCCTCCTTTGGCTTGTCTTGCTTTACCTTTTTAGTTCTTCCGCTAAAACCGTTCAT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TCTTTCCTCCTTTGGCTTGTCTTGCTTTACCTTTTTAGTTCTTCCGCTAAAACCGTTCAT 140
Query 121 AACCACGAGAGATTGTTCCGGCAAGAAAATATCATCGATCTCCCTGTCGAAAACGTCCCA 180
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 141 AACCATGAGAGATTGTTCCGGCAAGAAAATGTCATCGATCTCCCTGTCGAAAACGTCCCA 200
Query 181 CAAAACCACGAA-CCTGATGAAGCTCCTGTCGTTAACGTTGTCTCTGAGGACATTTCCGT 239
|| ||||||||| || |||||||||||||||||| || || | |||||| |||| ||
Sbjct 201 CATAACCACGAATCC-GATGAAGCTCCTGTCGTT---GTA-TC-C-GAGGACGTTTCTGT 253
Query 240 TGATAACAGCTCTCTTCCTGTTTCTGTCGAT-TCTCCTCCGGATGATCAGATGTCAGAAG 298
||||||||||||||||||||| || |||||| | || ||||||||||||||||||||| |
Sbjct 254 TGATAACAGCTCTCTTCCTGTCTCGGTCGATATATC-TCCGGATGATCAGATGTCAGAGG 312
Query 299 ACAAGAAGGTTGTGACTGATCTCGTTGAAGAACTTGAGAAAGAAAGGGTTGAAAATGAGA 358
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 313 ACAAGAAGGTTGTGACTGATCTCGTTGAAGAACTCGAGAAAGAAAGGGTTGAGAATGAGA 372
Query 359 AGAAGAGAGTTGATTCGGTTGT-A-A-TTGGACGGTCATCTAAGGCAAGGAGAGGACATC 415
|||||||||||||||||||| | | | |||| |||||||| | |||||||||||||||||
Sbjct 373 AGAAGAGAGTTGATTCGGTTATCACAATTGGTCGGTCATCGAGGGCAAGGAGAGGACATC 432
Query 416 GAGAGCCACGAAAGGCGAGATCTTCGGGTAGATTGGAGGCAGAGAAGAAAAGGGTTCGTC 475
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 433 GAGAGCCACGAAAGGCGAGATCTTCGGGTAGATTGGAGGCAGAAAAGAAAAAGGTTCGTC 492
Query 476 GTAATGATGCTGATGAGAGCAATGCGGAGAATAGTGATGAGAATCATCAAGCATTAGACA 535
|| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 493 AAAAGGATGATGATGAGAGCAATGTGGAGAATAGTGATGAGAATCATCAAGCATTAGACA 552
Query 536 AAGAACCGAACTTTTTCGAGGCTAAGAAAGACGTGGAACCAAAGAAAGCGCTAGTTGATG 595
|||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 553 AAGAACCGAATTTTTTCGAGCCTAGGAAAGACGTGGAACCAAAGAAAGCGCAAGTTGATG 612
Query 596 ATAATGACGACGATCTT-GAGACCAAGAGAGGCAAGGAGTTGCCGAATGATTCT-TCCAG 653
|||||||||||||| || |||| |||||| || ||||| ||||||||||||| | |||||
Sbjct 613 ATAATGACGACGAT-TTAGAGAGCAAGAGGGGTAAGGAATTGCCGAATGATT-TGTCCAG 670
Query 654 TAATGTTGTTGAAGATGATAA 674
||||| |||||||||||||||
Sbjct 671 TAATGATGTTGAAGATGATAA 691
> Ahg359365 jgi|Araly1|359365|fgenesh1_pg.C_scaffold_146000001
Length=2124
Score = 2224 bits (1204), Expect = 0.0
Identities = 1376/1460 (94%), Gaps = 8/1460 (1%)
Strand=Plus/Plus
Query 706 GATAACATCTCTAAATCTGAACCAAAAACTCAGAGAAA-TTTTGTATTGAATAAGAATAA 764
||||||| |||| || | |||||||||||||||||||| |||| || |||||| |||||
Sbjct 667 GATAACACCTCTGAACCCGAACCAAAAACTCAGAGAAAGTTTT-CATCGAATAATAATAA 725
Query 765 TACTTCCAAGGCGAAAAACAGAGTAATTTCCAAGAGAAACCAACCTAGTAGAGTCGGTAA 824
|| |||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 726 TAATTCCGAGGCGAAAAACAGAGTAATTTCCAAAAGAAACCAACCTAAAAGAGTCGGAAA 785
Query 825 AGTTATGTTACGGCCAAGAGAAACGCGAAGTAACGATCCATGTAAAGGAAAATATGTGTA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 AGTTATGTTACGGCCAAGAGAAACGCGAAGTAACGATCCATGTAAAGGAAAATATGTGTA 845
Query 885 TATGCATGAGGTGCCAGCTTTGTTTAACGAAGAGCTTCTCAAGAACTGTTGGACATTGAG 944
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 846 TATGCACGAAGTTCCAGCTTTGTTTAACGAAGAGCTTCTCAAGAATTGTTGGACATTGAG 905
Query 945 CAGGTGGACTGATATGTGCGAGTTAACGTCGAATTTCGGGTTAGGCCCTCGTCTACCAAA 1004
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 906 CAGGTGGACCGATATGTGCGAGTTAACATCGAATTTCGGATTAGGCCCTCGTCTACCAAA 965
Query 1005 CATGGAAGGAGTTTCTGGTTGGTATGCCACAAACCAGTTCACATTGGAAGTAATATTCCA 1064
|||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 966 CATGGAGGGAGTTTCTGGTTGGTATGCCACAAACCAATTTACATTAGAAGTGATATTCCA 1025
Query 1065 CAACAGGATGAAGCAGTACAAGTGCTTGACCAAAGACTCGTCTTTAGCTTCTGCGGTGTA 1124
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1026 CAACAGGATGAAGCAATACAAGTGCTTGACCAAAGACTCGTCTCTAGCTTCCGCGGTGTA 1085
Query 1125 TGTTCCTTACTATCCGGGTTTAGACTTGATGCGGTTTTTGTGGGGACCGTTCCCTTTCAT 1184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1086 TGTTCCTTACTATCCGGGTTTAGACTTGATGCGGTTTTTATGGGGACCGTTCCCTTTCAT 1145
Query 1185 GAGAGATGCTGCCGCGCTTGATCTCATGAAGTGGCTGAGGGAGAGT-CAGGAGTGGAAGA 1243
|||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 1146 GAGAGATGCTGCAGCGCTTGATCTGATGAAGTGGCTGAGGGAGAGTCCA-GAGTGGAAGA 1204
Query 1244 GGATGGACGGACGAGATCATTTTATGGTGGCTGGTCGAACCACTTGGGACTTTATGCGTA 1303
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1205 GAATGGACGGCCGAGATCATTTTATGGTGGCTGGTCGTACCACTTGGGACTTTATGCGTA 1264
Query 1304 CACCAGAGAATGAATCCGATTGGGGAAATAGGTTAATGATATTACCGGAAGTAAGAAACA 1363
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1265 CACCTGAGAATGAATCCGATTGGGGCAATAGGTTAATGATCTTACCGGAAGTAAGAAACA 1324
Query 1364 TGACGATGCTACTAATCGAATCAAGCCCATGGAACTACCACGGGTTCGCGGTTCCTTACC 1423
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1325 TGACGATGCTACTAATCGAATCAAGCCCATGGAACTACCACGGATTCGCGGTACCTTACC 1384
Query 1424 CGACCTATTTCCACCCTTCAACATACGCAGAAATCATCCAATGGCAGATGAGAATGAGAA 1483
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1385 CGACCTATTTCCACCCTTCAACCTACGCAGAGATCATCCAATGGCAGATGAGAATGAGAA 1444
Query 1484 GAATTAATCGTCGTTACTTATTCTCATTTGTCGGTGCCCCACGACCAAACCTCGGTGACA 1543
||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||||
Sbjct 1445 GAATTAATCGTCGTTACCTATTCTCCTTTGTCGGTGCACCACGTCCAAATCTCGGTGACA 1504
Query 1544 GCATAAGAACCGAGATCATGGACCAATGCAAAGCTT-CAAAACGAAAATGCAAGCTTCTA 1602
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 1505 GCATAAGAACCGAGATCATGGACCAATGCAAAGCTTCCACAA-GAAAATGCAAGCTTCTA 1563
Query 1603 GAATGCATATCGGGTTCTCAAAAATGCTACAAACCCGACCAAATCATGAAATTCTTTTTG 1662
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1564 GAATGCGTATCGGGTTCTCAAAAATGCTACAAACCCGACCAAATCATGAAATTCTTCTTG 1623
Query 1663 AGCTCAACGTTCTGTCTTCAACCACCAGGTGACTCATACACACGTCGCTCCACTTTTGAC 1722
|||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1624 AGCTCAACATTCTGTCTCCAACCACCCGGTGACTCATACACACGCCGCTCCACTTTCGAC 1683
Query 1723 TCCATCTTAGCAGGTTGTATACCAGTTTTCTTTCATCCGGGATCAGCTTATGCGCAATAC 1782
||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||
Sbjct 1684 TCCATCTTAGCAGGTTGTATACCGGTTTTCTTCCATCCGGGGTCAGCTTACGCTCAATAC 1743
Query 1783 ATTTGGCATTTACCGAAAGATATCGCGAAATACTCTGTTTTTATTCCGGAGAAAAATGTG 1842
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1744 ATTTGGCATTTACCGAAAGATATCGCGAAATACTCTGTTTTTATACCAGAGAAAAACGTG 1803
Query 1843 AAAGAAGGTAAAGTGAGTATAGAGAATGTTTTGAGTAGAATACCGAGGAC-AAAAGTTTT 1901
|||||||||||||||||||||||||||||||||||||| || || ||||| |||| ||||
Sbjct 1804 AAAGAAGGTAAAGTGAGTATAGAGAATGTTTTGAGTAGGATCCCAAGGACGAAAA-TTTT 1862
Query 1902 CGCTATGAGAGAACAAGTGATAAGACTGATACCGAGGTTAATGTATTTTCACCCGTCGAG 1961
||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1863 CGCGATGAGAGAACAAGTGATCAGACTGATACCGAGGTTAATGTATTTTAACCCGTCGAG 1922
Query 1962 TAAGAGTGAAGACACGGGAAGGTTTGAAGATGCATTCGATGTCGCGGTGGAAGGAGTTTT 2021
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1923 TAAGAGCGAAGACACGGGAAGGTTTGAAGATGCATTCGATGTCGCGGTAGAAGGAGTGTT 1982
Query 2022 GGAAAGAGTGGAGGGGTTAAGGAAGAGGATAGAGGAAGGCAAGGAGGAGATTTTTGATTT 2081
||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 1983 GGAAAGAGTGGAGGGATTAAGGAAGAGGATAGAGGAAGGGAAAGAGGAGATTTTCGATTT 2042
Query 2082 TCCGGAGCAGTATTCTTGGAAATATAATGTGTTTGGGAATGTTGAGAGGCATGAGTGGGA 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 TCCGGAGCAGTATTCTTGGAAATATAATGTGTTTGGGAATGTTGAGAGGCATGAGTGGGA 2102
Query 2142 TCCTTACTTCGATCGGCCTT 2161
||||||||||||| ||||||
Sbjct 2103 TCCTTACTTCGATAGGCCTT 2122
Score = 965 bits (522), Expect = 0.0
Identities = 631/681 (93%), Gaps = 17/681 (2%)
Strand=Plus/Plus
Query 1 ATGGCAATGGAGAAGTCTAGCTCAAAGTACAGAACCCAGTTCTGGTACGTGGCAATGGCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAATGGAGAAGTCTAGCTCAAAGTACAGAACCCAGTTCTGGTACGTTGCAATGGCC 60
Query 61 TCATTCCTCCTTTGGCTTGTCTTGCTTTACCTTTTTAGTTCTTCCGCTAAAACCGTTCAT 120
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TCTTTCCTCCTTTGGCTTGTCTTGCTTTACCTTTCTAGTTCTTCCGCTAAAACCGTTCAT 120
Query 121 AACCACGAGAGATTGTTCCGGCAAGAAAATATCATCGATCTCCCTGTCGAAAACGTCCCA 180
||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 121 AACCACGCGAGATTGTTCCGGCAAGAAAATGTCATCGATCTCCCTATCGAAAACGTCCCA 180
Query 181 CAAAACCACGAA-CCTGATGAAGCTCCTGTCGTTAACGTTGTCTCTGAGGACATTTCCGT 239
|||||||||||| || ||||||||||| | | | ||||||||||||||||||||||||
Sbjct 181 CAAAACCACGAATCC-GATGAAGCTCC--T-G-T--CGTTGTCTCTGAGGACATTTCCGT 233
Query 240 TGATAACAGCTCTCTTCCTGTTTCTGTCGAT-TCTCCTCCGGATGATCAGATGTCAGAAG 298
||||||||||||||||||||| || |||||| | | |||||||||||||||||||||| |
Sbjct 234 TGATAACAGCTCTCTTCCTGTCTCGGTCGATATAT-CTCCGGATGATCAGATGTCAGAGG 292
Query 299 ACAAGAAGGTTGTGACTGATCTCGTTGAAGAACTTGAGAAAGAAAGGGTTGAAAATGAGA 358
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 293 ACAAGAAGGTTGTGACTGATCTCGTTGAAGAACTCGAGAAAGAAAGGGTTGAGAATGAGA 352
Query 359 AGAAGAGAGTTGATTCGGTTGT---AATTGGACGGTCATCTAAGGCAAGGAGAGGACATC 415
|||||||||||||||||||| | |||||| |||||||| | |||||||||||||||||
Sbjct 353 AGAAGAGAGTTGATTCGGTTATCACAATTGGTCGGTCATCGAGGGCAAGGAGAGGACATC 412
Query 416 GAGAGCCACGAAAGGCGAGATCTTCGGGTAGATTGGAGGCAGAGAAGAAAAGGGTTCGTC 475
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 413 GAGAGCCACGAAAGGCGAGATCTTCGGGTAGATTGGAGGCAGAAAAGAAAAAGGTTCGTC 472
Query 476 GTAATGATGCTGATGAGAGCAATGCGGAGAATAGTGATGAGAATCATCAAGCATTAGACA 535
|| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 473 AAAAGGATGATGATGAGAGCAATGTGGAGAATAGTGATGAGAATCATCAAGCATTAGACA 532
Query 536 AAGAACCGAACTTTTTCGAGGCTAAGAAAGACGTGGAACCAAAGAAAGCGCTAGTTGATG 595
|||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 533 AAGAACCGAATTTTTTCGAGCCTAGGAAAGACGTGGAACCAAAGAAAGCGCAAGTTGATG 592
Query 596 ATAATGACGACGATCTT-GAGACCAAGAGAGGCAAGGAGTTGCCGAATGATTCT-TCCAG 653
|||||||||||||| || |||| |||||| || ||||| ||||||||||||| | |||||
Sbjct 593 ATAATGACGACGAT-TTAGAGAGCAAGAGGGGTAAGGAATTGCCGAATGATT-TGTCCAG 650
Query 654 TAATGTTGTTGAAGATGATAA 674
| ||| |||||||||||||||
Sbjct 651 TGATGATGTTGAAGATGATAA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5