BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G29045.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg887514 jgi|Araly1|887514|Al_scaffold_0146_1                       233    3e-61
  Ahg933375 jgi|Araly1|933375|scaffold_401363.1                        198    1e-50


> Ahg887514 jgi|Araly1|887514|Al_scaffold_0146_1
Length=198

 Score =  233 bits (126),  Expect = 3e-61
 Identities = 174/197 (88%), Gaps = 3/197 (2%)
 Strand=Plus/Plus

Query  44   TTGTTATGTTCGCCTTAATTGAACAAAATATGGGATGCATGGCGGTTCTTGGCTCGTGTG  103
            |||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct  2    TTGTGATGTTAGCCTTAGTTGAACAAAATATGGGATGCATGGCAGTTCTTGGCTCGTGCG  61

Query  104  GTGTCATTACAGATTGCAGTGGGTCATGCAAGACTAAGTTTGGACAAGATGCTAGTGGCG  163
            |||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct  62   GTGTTATTACAGACTGCAGTGGGACATGCAAGACTAAGTTTGGACAAGATGCGAGTGGCG  121

Query  164  ATTGTGACCGTGACGGTGGTCAAGGAACATGTATGTGTGGTTATCCTTGTCCA-CA--TG  220
            |||||||||| |||||||||   ||||||||| | ||||||||| | |||||| ||  | 
Sbjct  122  ATTGTGACCGCGACGGTGGTGTTGGAACATGTGTTTGTGGTTATTCGTGTCCATCACCTC  181

Query  221  ATAAGCTACATATGTGA  237
            ||||||  |||||||||
Sbjct  182  ATAAGCCCCATATGTGA  198


> Ahg933375 jgi|Araly1|933375|scaffold_401363.1
Length=226

 Score =  198 bits (107),  Expect = 1e-50
 Identities = 140/156 (90%), Gaps = 2/156 (1%)
 Strand=Plus/Plus

Query  61   ATTGAACAAAATATGGGATGCATGGCGGTTCTTGGCTCGTGTGGTGTCATTACAGATTGC  120
            |||||||||||||||||||||||  |||||||||||||||| ||||| |||||||| || 
Sbjct  32   ATTGAACAAAATATGGGATGCAT--CGGTTCTTGGCTCGTGCGGTGTGATTACAGACTGT  89

Query  121  AGTGGGTCATGCAAGACTAAGTTTGGACAAGATGCTAGTGGCGATTGTGACCGTGACGGT  180
            |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  90   AGTGGGACATGCAAGACTAAGTTTGGACAAGATGCGAGTGGCGATTGTGACCGCGACGGT  149

Query  181  GGTCAAGGAACATGTATGTGTGGTTATCCTTGTCCA  216
            |||   ||||||||| | ||||||||| | ||||||
Sbjct  150  GGTGTTGGAACATGTGTTTGTGGTTATTCGTGTCCA  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5