BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29050.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481823 jgi|Araly1|481823|fgenesh2_kg.4__883__AT2G29050.1 2259 0.0
> Ahg481823 jgi|Araly1|481823|fgenesh2_kg.4__883__AT2G29050.1
Length=1460
Score = 2259 bits (1223), Expect = 0.0
Identities = 1396/1473 (95%), Gaps = 38/1473 (3%)
Strand=Plus/Plus
Query 47 ACAACAATGTCACAAAAAGTCTGATCCTTTCTCTTTAGATTTGGCTTCGAGAAATGGCTC 106
|||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 25 ACAACAATGTCATAAAAAGTTTGATCCTTTCTCTTTAGATTTGGCTTCGA-AAATGGCTC 83
Query 107 GCGATCGGCGGGAAGGTCTGGAGATCAAGGTGGTGAATCCACCGGCGGCGGCGACAAACA 166
||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 84 GCGATCGGCGGGAAGGTCTGGAGATTAAGGTGGTGAATCCA-C--CGGCGGCGACAAACA 140
Query 167 ATGTGGCTGTAGAAACGTCTCCGGCGACGGCGACGAGGAGACGGAGACAACAACAACGAG 226
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 141 ATGTGTCTGTAGAAACGTCTCCGGCGACGGCGACGAGGAGACGGAG---ACAACAACGAG 197
Query 227 CTTCGTTCGCTGAGTTTAGACCGTTTAAGCTTTGGTTTCCATGGCTTGTTCCAGCTATCG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CTTCGTTCGCTGAGTTTAGACCGTTTAAGCTTTGGTTTCCATGGCTTGTTCCAGCTATCG 257
Query 287 TGGTGGCTAACATTGCCCTTTTCGCCATTTCGATGTTTATTAACAATTGTCCTAAGAACT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TGGTGGCTAACATTGCCCTTTTCGCCATTTCGATGTTTATTAACAATTGTCCTAAGAACT 317
Query 347 CGGCTTATTGCTTAGCTAGGTTTCTTGGGAGATTTGCTTTTCAGCCTATGAAAGAGAATC 406
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CGGCTTATTGCTCAGCTAGGTTTCTTGGGAGATTTGCTTTTCAGCCTATGAAAGAGAATC 377
Query 407 CTCTTCTGGGTCCTTCTTCTTTGACATTGGAGAAGATGGGGGCTTTAGATGTATCAATGG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CTCTTCTGGGTCCTTCTTCTTTGACATTGGAGAAGATGGGGGCTTTAGATGTATCAATGG 437
Query 467 TGGTTCATAAGCACGAGGTGTGGCGCTTGTTCACTTGTATATGGCTACATGCTGGGGTTT 526
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 438 TGGTTCATAAGCATGAGGTGTGGCGATTGTTCACGTGTATATGGCTACATGCTGGAGTTT 497
Query 527 TTCATGTTCTTGCCAACATGTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAAT 586
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 498 TTCATGTTCTTGCCAACATGTTGAGTCTTATCTTCATTGGCATTCGACTCGAGCAAGAAT 557
Query 587 TTGGATTTGTACGCATTGGATTGCTTTATATGATATCTGGATTTGGTGGAAGTTTGTTAT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TTGGATTTGTACGCATTGGATTGCTTTATATGATATCTGGATTTGGTGGAAGTTTGTTAT 617
Query 647 CTTCTCTATTTAACCGGGCTGGTATATCCGTTGGTGCCTCTGGAGCATTATTCGGCTTGC 706
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 618 CTTCTCTCTTTAACCGGGCTGGTATATCTGTTGGTGCCTCTGGAGCATTATTTGGCTTGC 677
Query 707 TTGGTGCTATGCTTTCAGAGCTTCTCACTAATTGGACTATTTACGCTAATAAGTTTGCAG 766
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 678 TTGGTGCTATGCTTTCAGAGCTTCTCACTAATTGGACTATTTACGCAAATAAGTTTGCAG 737
Query 767 CTCTTTTGACACTCATCTTCATCATAGCCATTAATTTAGCAGTAGGTATTCTTCCACATG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CTCTTTTGACACTCATCTTCATCATAGCCATTAATTTAGCAGTAGGTATTCTTCCACATG 797
Query 827 TAGACAACTTTGCCCATCTTGGAGGATTCACATCAGGGTTTCTTCTAGGCTTTGTTTTCT 886
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 798 TAGACAACTTTGCCCATCTTGGAGGATTCACATCCGGGTTTCTTCTAGGCTTTGTTTTCT 857
Query 887 TGATACGTCCTCAGTATGGATACTTCAACCAGCGGAACAATCCTCGGGGTTATGCTGCAC 946
|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 858 TGATCCGTCCTCAGTATGGATACTTCAACCAGAGGAATAATCCTCGCGGTTATGCTGCAC 917
Query 947 CGTCTGCTAAATCCAAACACAAGCCATACCAATACGTTCTTTGGATCACCTCTTTAGTGC 1006
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 918 CGTCTGCTAAATCCAAACACAAGCCATACCAATACGTTCTCTGGATCACCTCTTTATTGC 977
Query 1007 TTTTAATAGCAGGATATACCGCTGGACTCGTAGTGCTTCTTCGAGGAACGGATCTAAACA 1066
|||||||||| |||||||||| |||||| ||||||||||||||||| |||||||| ||||
Sbjct 978 TTTTAATAGCTGGATATACCGTTGGACTTGTAGTGCTTCTTCGAGGGACGGATCTGAACA 1037
Query 1067 AGCATTGTTCATGGTGCCATTATCTCAGCTGTATTCCTACGTCGCTTTGGAGCTGTAAAT 1126
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1038 AGCACTGTTCATGGTGCCATTATCTCAGCTGTATTCCTACGTCGCTATGGAGCTGTAAAT 1097
Query 1127 CTCAAAATGTCTACTGTGAGTCGAGCCAAATTGGGCAGCAGATGAACTTGACATGTATCA 1186
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1098 CTCAAAATGTCTACTGTGAGTCGAGCCAAATTGGACAGCAGATGAACTTGACATGTATCG 1157
Query 1187 CGAATGGGAAAACAGAGATGTACAAGCTCTCTAACGATATACCGTCTCGGATTCAGCAGT 1246
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 1158 CGAATGGGAAAACAGAGATGTACAAGCTTTCTAACGATATCCCGTCTCGGGTTCAGCAGT 1217
Query 1247 TGTGTTCCCAATTGTGCAGATGAATACCACTAAACGTCTAATTTTTATACTCTTGTAGAA 1306
||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1218 TGTGTTCCCAATTGTGCCGCTGA-TACCACTAAACGTCTAATTTTTATACTCT-GTAGAA 1275
Query 1307 AGTTAGGAATGTGTCTTGAGGAAGAGAAGATTGTTCATTTAACATGATCATGCACTTGTG 1366
|||||||||||| | | || ||||||||||||||||||||||||||||||
Sbjct 1276 AGTTAGGAATGT------A--A-GA-----TTGTTCATTTAACATGATCATGCACTTGTG 1321
Query 1367 GATTCTTCTTTCTGATCATTGTTTGTTTCCACTTCTTGTTTTATTGTTGCATATGTATTG 1426
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1322 GATTCTTCTTTCTGATCATTGTTTGGTTCCACTTCTTGTTTT---GTTGCATATGTATTG 1378
Query 1427 ACCATGATCTATGTAATGAGAACATAGGTGAAGAGAAAGTTGAACAAAGTTTTTGTTCTT 1486
||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1379 ACCATGATCTATGTAATGAGAACATAGGTGAAGAGAAAGTT--------TTT--GTTCTT 1428
Query 1487 AAACATTTTAATTATAAATTCA-GATGTTTAAT 1518
|||||||||||||||||| || |||||| |||
Sbjct 1429 TAACATTTTAATTATAAAT-CAAGATGTTCAAT 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5