BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29060.1
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933377 jgi|Araly1|933377|scaffold_401365.1 3138 0.0
Ahg910443 jgi|Araly1|910443|Al_scaffold_0001_697 241 2e-62
> Ahg933377 jgi|Araly1|933377|scaffold_401365.1
Length=4008
Score = 3138 bits (1699), Expect = 0.0
Identities = 1987/2123 (94%), Gaps = 31/2123 (1%)
Strand=Plus/Plus
Query 53 ATTAGGGTTCTTGATTTCATCAATGGGTTCTTACTCAGCTGGCTTCCCTGGATCCTTGGA 112
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct 1 ATTAGGGTTCTTGATTTCAACAATGGGTTCTTACTCCGCTGGCTTCCCTGGATCTTTGGA 60
Query 113 CTGGTTTGATTTTCCCGGTTTAGGAAACGGATCCTATCTAAATGATCAACCTTTGTTAGA 172
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CTGGTTTGATTTTCCCGGTTTAGGAAACGGATTCTATCTAAATGATCAACCTTTGTTAGA 120
Query 173 TATTGGATCTGTTCCTCCTCCTCTAGACCCATATCCTCAACAGAATCTTGCTTCTGCGGA 232
| |||||||||||||||||||| ||| |||||| | ||||||| ||||||||| |||||
Sbjct 121 GACTGGATCTGTTCCTCCTCCTCCAGAGCCATATTCGCAACAGAGTCTTGCTTCCGCGGA 180
Query 233 TGCTGATTTCTCTGATTCTGTTTTGAAGTACATAAGCCAAGTTCTTATGGAAGAGGACAT 292
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 181 TGCTGATTTCTCTGATTCTGTTTTGAAGTACATAAGTCAAGTTCTTATGGAAGAAGATAT 240
Query 293 GGAAGATAAGCCTTGTATGTTTCATGATGCTTTATCTCTTCAAGCAGCTGAGAAGTCTCT 352
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 241 GGAAGATAAGCCTTGTATGTTTCATGATGCTTTGTCTCTTCAAGCAGCTGAGAAATCTCT 300
Query 353 CTATGAAGCTCTCGGCGAGAAGTACCCGGTTGATGATTCTGATCAGCCTCTGACTACTAC 412
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 301 CTATGAAGCTCTCGGCGAGAAGTACGCGGTTGATGATTCTGATCAGCCTTTG---ACTAC 357
Query 413 TACTAGCCTTGCTCAATTGGTTAGTAGTCCTGGTGGTTCTTCTTATGCTTCAAGCACCAC 472
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 358 TACTAGCCTTGCTCAATTGGTTAGTAGTCCTGATGGTTCTTCTTATGCTTCAAGCATCAC 417
Query 473 AACCACTTCCTCTGATTCACAATGGAGTTTTGATTGTTTGGAGAATAATAGGCCTTCTTC 532
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AACAACTTCATCTGATTCACAATGGAGTTTTGATTGTTTGGAGAATAATAGGCCTTCTTC 477
Query 533 TTGGTTGCAGACACCGATCCCGAGTAACTTCATTTTTCAGTCTACATCTACTAG----AG 588
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 478 TTGGTTGCAGACACCGATCCCGAGTAACTTCGTTTTTCAGTCTACTTCTACTAGAACCAG 537
Query 589 --C-CA-----------GTAGCGGTAACGCGGTTTTCGGGTCAAGTTTTAGCGGTGATTT 634
| || |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 538 TCCACAGTCTGTTGTTGGTAGTGGTAATGCGGTTTTCGGGTCAAGTTTTAGCGGTGATTT 597
Query 635 GGTTTCTAATATGTTTAATGATA-CTGACTTGGCGTTACAATTCAAGAAAGGGATGGAGG 693
|| ||||||||||||||| |||| | || |||||||||||||||||||||||||||||||
Sbjct 598 GGCTTCTAATATGTTTAACGATAGC-GAATTGGCGTTACAATTCAAGAAAGGGATGGAGG 656
Query 694 AAGCTAGTAAATTCCTTCCTAAGAGCTCTCAGTTGGTTATAGATAACTCTGTTCCTAACA 753
|||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 657 AAGCTAGTAAGTTCCTTCCTAAGAGCTCTCAGTT-G-----GATAACTCTGTTCCTTACA 710
Query 754 GATTAACCGGAAAGAAGAGCCATTGGCGCGAAGAAGAACATTTGACTGAAGAAAGAAGTA 813
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 711 GATTAACCGGAAAGAAGAGCCATTGGCGCGAAGATGAACATTTGGCTGAAGAAAGAAGTA 770
Query 814 AGAAACAATCTGCTATTTATGTTGATGAAACTGATGAGCTTACTGATATGTTTGACAATA 873
||| ||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 771 GGAAGCAATCAGCTGTTTATGTTGATGAAACTGATGAGCTGACTGAGATGTTTGACAAGA 830
Query 874 TTCTGATATTTGGCGAGGCTAAGGAACAACCTGTATGCATTCTTAACGAGAGTTTCCCTA 933
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 831 TTCTGATATTTGGCGAGGCTAAGGAACAACCTGTATGCATTCTTAACGAGAATTTCCCGA 890
Query 934 AGGAACCTGCGAAAGCTTCAACGTTTAGTAAGAGTCCTAAAGGCGAAAAACCGGAAGCTA 993
||||||| |||||||||||| ||||| ||||||||| |||| |||| |||||||| ||||
Sbjct 891 AGGAACCCGCGAAAGCTTCATCGTTTGGTAAGAGTCATAAAAGCGAGAAACCGGATGCTA 950
Query 994 GTGGTAACAGTTATACAAAAGAGACACCTGATTTGAGGACAATGCTGGTTTCTTGTGCTC 1053
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 951 GTGGTAACAGTTATACAAAAGAGACACCTGATTTGAGGACAATGTTGGTATCTTGTGCTC 1010
Query 1054 AAGCTGTTTCGATTAACGATCGTAGAACTGCTGACGAGCTGTTAAGTCGGATAAGGCAAC 1113
||||||| |||||||| ||||||||||| |||||||| |||||||||| ||| |||||||
Sbjct 1011 AAGCTGTGTCGATTAATGATCGTAGAACCGCTGACGATCTGTTAAGTCAGATTAGGCAAC 1070
Query 1114 ATTCTTCATCTTACGGCGATGGAACAGAGAGATTGGCTCATTATTTTGCTAACAGTCTTG 1173
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1071 ATTCTTCATCTTACGGCGATGGAACAGAGAGATTGGCTCATTATTTCGCTAACAGTCTTG 1130
Query 1174 AAGCACGTTTGGCTGGGATAGGTACACAGGTTTATACTGCCTTGTCTTCCAAGAAAACAT 1233
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1131 AAGCACGTTTGGCTGGTATAGGTACACAGGTTTATACCGCCTTGTCTTCCAAGAAAACAT 1190
Query 1234 CTACTTCTGACATGTTGAAAGCTTATCAGACATATATATCAGTCTGTCCGTTCAAGAAAA 1293
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1191 CTACTTCCGACATGTTGAAAGCTTACCAGACATACATATCAGTCTGTCCGTTCAAGAAAA 1250
Query 1294 TCGCAATCATATTCGCCAACCATAGTATTATGCGGTTGGCTTCAAGTGCTAATGCCAAAA 1353
|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
Sbjct 1251 TCGCAATCATATTCGCTAACCATAGTATTATGCGGTTGGCTTCCACTGCTAATGCCAAGA 1310
Query 1354 CCATCCACATCATAGATTTTGGAATATCTGATGGTTTCCAGTGGCCTTCTCTGATTCATC 1413
| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1311 CTATCCACATCATAGATTTTGGGATATCTTATGGTTTCCAGTGGCCTTCTCTGATTCATC 1370
Query 1414 GACTTGCTTGGAGACGTGGTTCATCTTGTAAGCTTCGGATAACCGGTATAGAGTTGCCTC 1473
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GCCTTGCTTGGAGACGTGGTTCATCTTGTAAGCTTCGGATAACCGGTATAGAGTTGCCTC 1430
Query 1474 AACGTGGTTTTAGACCAGCCGAGGGAGTTATTGAGACTGGTCGTCGCTTGGCTAAGTATT 1533
|||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 1431 AACGGGGTTTTAGACCAGCAGAGGGAGTTATTGAGACGGGTCATCGCTTGGCTAAGTATT 1490
Query 1534 GTCAGAAGTTCAATATTCCGTTTGAGTACAATGCGATTGCGCAGAAATGGGAATCAATCA 1593
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1491 GTCAGAAGTTCAATGTTCCGTTTGAGTACAATGCGATTGCGCAGAAATGGGAAACAATCA 1550
Query 1594 AGTTGGAGGACTTGAAGCTAAAAGAAGGCGAGTTTGTTGCGGTAAACTCTTTATTTCGGT 1653
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1551 AATTGGAGGACTTGAAGCTAAAAGAAGGCGAGTTTGTTGCGGTAAACTCTCTATTTCGGT 1610
Query 1654 TTAGGAATCTTCTAGATGAGACGGTGGCAGTGCATAGCCCGAGAGATACGGTTTTGAAGC 1713
||||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 1611 TTAGGAACCTCCTAGATGAGACGGTGGCTGTGCACAGCCCGAGAGATACGGTTCTGAAGC 1670
Query 1714 TGATAAGGAAGAT-AAAGCCAGACGTGTTCATCCCCGGGATCCTCAGCGGATCCTACAAC 1772
||||||||||||| ||| ||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 1671 TGATAAGGAAGATTAAA-CCAGATGTGTTCATCCCAGGGATCCTCAGTGGATCTTACAAT 1729
Query 1773 GCGCCTTTCTTTGTCACGAGGTTTAGAGAAGTTCTGTTTCATTACTCATCTCTGTTTGAC 1832
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1730 GCGCCTTTCTTTGTCACGAGGTTTAGAGAAGTTCTGTTTCATTACTCGTCTCTGTTTGAC 1789
Query 1833 ATGTGTGACACGAATCTAACACGGGAAGATCCAATGAGGGTTATGTTTGAGAAAGAGTTC 1892
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1790 ATGTGTGACACGAATCTAACACGGGAAGATCCAATGAGGGTGATGTTTGAGAAAGAGTTC 1849
Query 1893 TATGGGCGGGAGATCATGAACGTGGTGGCGTGTGAGGGGACGGAGAGAGTGGAGAGGCCA 1952
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1850 TATGGGAGGGAGATCATGAATGTGGTGGCGTGTGAGGGGACAGAGAGAGTGGAGAGGCCA 1909
Query 1953 GAGAGTTATAAGCAGTGGCAGGCGAGGGCGATGAGAGCCGGGTTTAGACAGATTCCGCTG 2012
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1910 GAGAGTTATAAGCAGTGGCAGGCCAGGGCGATGAGAGCCGGGTTTAGACAGATTCCGCTG 1969
Query 2013 GAGAAGGAACTAGTTCAGAAACTGAAGTTGATGGTGGAAAGTGGATACAAACCCAAAGAG 2072
|| |||||||| |||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1970 GATAAGGAACTGGTTCAGAAACTGAAGTTGCTGGTGGAAAGTGGATACAAAACGAAAGAG 2029
Query 2073 TTTGATGTTGATCAAGATTGTCACTGGTTGCTTCAGGGCTGGAAAGGTAGAATTGTATAC 2132
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2030 TTTGATGTTGATCAAGATTGTCACTGGTTACTTCAGGGCTGGAAAGGTAGAATTGTGTAT 2089
Query 2133 GGTTCATCTATTTGGGTTCCTTT 2155
||||||||| |||||||||||||
Sbjct 2090 GGTTCATCTGTTTGGGTTCCTTT 2112
> Ahg910443 jgi|Araly1|910443|Al_scaffold_0001_697
Length=4482
Score = 241 bits (130), Expect = 2e-62
Identities = 404/528 (77%), Gaps = 51/528 (10%)
Strand=Plus/Plus
Query 234 GCTGATTTCTCTGATTCTGTTTTGAAGTACATAAGCCAAGTTCTTATGGAAGAGGACATG 293
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GCTGATTTCTCTGATTCGGTTTTGAAGTACATAAGCCAAGTTCTTATGGAAGAGGACATG 273
Query 294 GAAGATAAGCCTTGTATGTTTCATGATGCTTTATCTCTTCAAGCAGCTGAGAAGTCTCTC 353
||||| |||||||||||||||||||| || || |||||||||| |||||||| ||||||
Sbjct 274 GAAGAGAAGCCTTGTATGTTTCATGACGCCTTGGCTCTTCAAGCTGCTGAGAAATCTCTC 333
Query 354 TATGAAGCTCTCGGCGAGAAGTACCCGG-TTGATGATTCTGATCA-G----CC-TC-TGA 405
|| || |||||||| ||||| ||||| || | ||||| | | || || |||
Sbjct 334 TACGAGGCTCTCGGTGAGAAATACCCTTCTTCTTC-TTCTGGTTTTGTGGACCATCCTGA 392
Query 406 CT-ACTA-CTACTAGCCTTGCTCA-ATTGGTTAGTAGT-CCTGGTGGTTCTTCTTA-TGC 460
| | || || | | || | | |||| | || || |||||| ||| ||| ||
Sbjct 393 GAGATTGGCTTCT-GA-TAGCCCTGAC-GGTTCTT-GTTCC-GGTGGTGCTT-TTAGTGA 446
Query 461 TT-CA--AGCACCACAACCACTTC--CT-CTGATTCACAATGGAGTTTTGATTGTTTGGA 514
|| | |||||||| |||||| | || |||||||||| |||||| ||||| |||||||
Sbjct 447 TTACGCTAGCACCACTACCACTACTTCTTCTGATTCACACTGGAGTGTTGATGGTTTGGA 506
Query 515 GAATAATAGGCCTTCTTCTTGGTTGCAGACACCGATCCCGAGTAACTTCATTTTTCAGTC 574
||||| | ||||| || |||| || ||||| || |||||||| || |||| |||||
Sbjct 507 GAATAG-A--CCTTC--CT-GGTTACATACACCTATGCCGAGTAATTTTGTTTTCCAGTC 560
Query 575 TACATCTAC-T--AG-AGC--CA--G-TAGCGGT---AA--C-GCGGTTTTCGGGTCAAG 619
|| |||| | | || || | | | ||| || | ||||||| |||||| |
Sbjct 561 CACTTCTAGGTCCAACAGTGTCACCGGTGGTGGTGGTAATACTGCGGTTTACGGGTCTGG 620
Query 620 TTTTAGCGGTGATTTGGTTTCTAATATGTTTAATGATACTGACTTGGCGT-TACAATTCA 678
||| ||| |||||||||||| |||||||||||||||| ||| ||||| | | || ||||
Sbjct 621 TTTCGGCGATGATTTGGTTTCGAATATGTTTAATGATAGTGAATTGGC-TATGCAGTTCA 679
Query 679 AGAAAGGGATGGAGGAAGCTAGTAAATTCCTTCCTAAGAGCT-CTCAG 725
||| |||| | |||||||| ||||| ||||||||||| | || |||||
Sbjct 680 AGAGAGGGGTAGAGGAAGCGAGTAAGTTCCTTCCTAA-ATCTTCTCAG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81703575525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5