BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29070.2
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900682 jgi|Araly1|900682|Al_scaffold_0004_1332 1498 0.0
> Ahg900682 jgi|Araly1|900682|Al_scaffold_0004_1332
Length=942
Score = 1498 bits (811), Expect = 0.0
Identities = 900/943 (95%), Gaps = 5/943 (1%)
Strand=Plus/Plus
Query 110 ATGGATGGAGATGGTTCTAGCTTTGAGCAGTGTTACCGTTGTTATCCTGTCACATTCATT 169
||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 1 ATGAATGGAGATGGTTCTAGCTTCGAGCAGTGTTACCGTTGTTACCCAGTCACATTCATT 60
Query 170 GACAAGGCACATCTTGAGAAGGGTGACAAAATTATCATGCCTCCTTCCGCTCTCGATCGT 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACAAGGCACATCTTGAGAAGGGTGACAAAATTATCATGCCTCCTTCCGCTCTCGATCGT 120
Query 230 CTTGCTTCTTTGCATATTGAATACCCAATGCTGTTTCAACTGAGTAATGTTTCTGTTGAG 289
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CTTGCTTCTTTGCATATTGAATACCCAATGTTGTTTCAACTGAGTAATGTTTCTGTTGAG 180
Query 290 AAGACCTCACATTGTGGTGTACTAGAATTCACTGCAGACGAAGGCCTAGTTTACTTGCCA 349
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 181 AAGACCTCACATTGCGGTGTACTGGAATTCACTGCAGACGAAGGCCTAGTTTACCTGCCG 240
Query 350 TATTGGATGATGCAAAACATGTCTCTTGAAGAGGGAGACGTTATGCAAGTTAAGAATATC 409
||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct 241 TATTGGATGATGCAAAACATGTCTCTTCAAGAAGGAGACGTTATGCAAGTGAAGAATATC 300
Query 410 AGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTTGGATATT 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTTGGACATT 360
Query 470 TCCAACCCAAAAGCCATCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGT 529
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TCTAACCCAAAAGCCATCTTGGAGACTACGCTTAGGAGCTACTCTTGCTTAACCACGGGT 420
Query 530 GATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCAAAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCAAAA 480
Query 590 CCTTCTTCAGCTGTGAGTATTATCGAAACGGATTGTGAGGTTGATTTTGCTCCTCCTCTT 649
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 481 CCTTCTTCAGCTGTGAGTATTATTGAAACGGATTGTGAAGTTGATTTTGCTCCTCCTCTT 540
Query 650 GATTACAAAGAACCTGAGAAGCCACAGAAGTTGACTCCTTCAAACAAACGACCTCTCCAA 709
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 541 GATTACAAAGAACCTGAGAAGCCACAGAAGTTGACTCCCTCAAACAAACGACCTCTCGAA 600
Query 710 GTTAAAGAAGAAGAAGAACCTGCAAGCAAAGTTCCCAAATTCACGCCGTTCACTGGATCA 769
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GTTAAAGAAGAAGAAGAACCTGCAAGCAAAGTTCCCAAATTCACGCCATTCACTGGATCA 660
Query 770 GGAAAACGTTTAGATGGAAAAGCACAAACACAAACTGAACCAGAAGATACAAAACAGCAA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAAAACGTTTAGATGGAAAAGCACAAACACAAACTGAACCAGAAGATACAAAACAGCAA 720
Query 830 GAAAAGCCGACTGAGAATGGGAAAGACGATGAGAAGTTGTCAGTCACTACACCAAGGCAA 889
|||||||| || || ||||||||| ||||||||||| ||||||| || |||||| |||||
Sbjct 721 GAAAAGCCAACCGAAAATGGGAAATACGATGAGAAGCTGTCAGTTACCACACCACGGCAA 780
Query 890 ATATCAGGAAAGCTCGTCTTTGGTTCAAACAGCAAATCA---GCTGCAAAAGAAACAGCG 946
| |||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
Sbjct 781 AGATCAGGAAAGCTTGTCTTTGGTTCAAACAGCAAACCATTAGCTGCAAAAGAAACAGTG 840
Query 947 AAAGTTGATGATCCAAAGAACATTGTGCAAGAGAGCTCAACAAAATCCGATGAAGCTAAG 1006
||||| | || |||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 841 AAAGTAGTTGCTCCAAAGAACATCGAGCAAGAGAGTTCAACAAAATCCGATGAAGCTAAG 900
Query 1007 TT-CAAAGTGTTCACAGGGAAGAAATACTCACTCAATGGTTAA 1048
|| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTCAA-GTGTTCACAGGGAAGAAATACTCACTCAATGGTTAA 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5