BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29080.1
Length=3000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344684 jgi|Araly1|344684|fgenesh1_pg.C_scaffold_4001026 3784 0.0
Ahg919477 jgi|Araly1|919477|scaffold_100758.1 2032 0.0
> Ahg344684 jgi|Araly1|344684|fgenesh1_pg.C_scaffold_4001026
Length=2457
Score = 3784 bits (2049), Expect = 0.0
Identities = 2327/2457 (95%), Gaps = 35/2457 (1%)
Strand=Plus/Plus
Query 293 ATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAGGGATTTTTGTACGGT 352
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 1 ATGATCTTCTTCTCTAAGCTTAGTCGCTCCATTTCTCGTTCAAGGGGGTTTTTGTACGGT 60
Query 353 GGTGGTGTTAGAT---C-G-G-----C--GGCAAGGCTACTTACTTCGCCGGGACTTGAG 400
||||||||||||| | | | | ||||||||||||| ||||||| || ||||||
Sbjct 61 GGTGGTGTTAGATCGGCGGTGTTAAACGAGGCAAGGCTACTTGCTTCGCCAGGTCTTGAG 120
Query 401 GCGGCGTCTGTGAATGAAGTGGAAGGTGGATTAGGGTTTATAAGAAGACACTTTGCTTCT 460
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGGCGTCTGTGAATCAAGTGGAAGGTGGATTAGGGTTTATAAGAAGACACTTTGCTTCT 180
Query 461 TTAGCTTCACGGAAGGGTTTAGTCAATAATGATTTGATTGGTGTTTTTGCTAATCC-AAG 519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TTAGCTTCACGGAAGGGTTTAGTCAATAATGATTTGATTGGTGTTTTTGCTAATCCAAAG 240
Query 520 ACTTCGTAGATTCTTCTCTGATGAAGCTCCTAAGAAGAAGAATTATGAGAACTATTTTCC 579
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 A-TTCGTCGATTCTTCTCTGATGAAGCTCCTAAGAAGAAGAATTATGAGAACTATTTTCC 299
Query 580 TAAAGAT---AAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGAGGGTTCAGA 636
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAAGATACAAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGAGGGTTCAGA 359
Query 637 AAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACCGATTCCAAAATTTGCTAAT 696
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 360 GAAGAATGAAAATGAGAACGTGGGAGATATGTTCATGAATCGATTCCAAAATTTGCTGAT 419
Query 697 TCCTCTACTAGCTCTTGCTGTATTCTTTTCTACTTTCTCGTTTGGCTCTGGGG---AACA 753
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 420 TCCTCTATTAGCTCTTGCTGTGTTCTTTTCTTCTTTCTCGTTTGGCTCTGGGGACCAACA 479
Query 754 ACA---ACA----G----A--TA--AGTTTCCAGGAGTTCAAAAACAAGCTACTCGAGCC 798
||| | | | | || |||||||||||||||||||||||||| ||||||||
Sbjct 480 ACAGGCAAATGTGGTTCTACTTATTAGTTTCCAGGAGTTCAAAAACAAGCTTCTCGAGCC 539
Query 799 TGGTTTAGTTGACCACATAGATGTTTCAAACAAATCAGTAGCAAAAGTCTACGTGAGGAG 858
||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 540 AGGTCTAGTTGACCACATAGATGTTTTAAACAAATCAGTAGCAAAAGTCTATGTGAGGAG 599
Query 859 CACACCGAAAGACCAACAAACAACTGACGTTGTCCATGGTAATGGTAACGGTATTCCTGC 918
| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 600 CTCACCGAAAGACCAACAAACAACTGACGTTGTCCATGGCAATGGTAATGGTATACCTGC 659
Query 919 TAAAAGAACTGGTGGTCAGTATAAGTACTACTTCAATATCGGTAGTGTTGATTCTTTTGA 978
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TAAAAGAACAGGTGGTCAGTATAAGTACTACTTCAATATCGGTAGTGTTGATTCTTTTGA 719
Query 979 GGAGAAACTCGAAGAAGCTCAAGAAGCGTTAGGTGTTGATCGTCATGAATATGTTCCTGT 1038
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 GGAGAAACTCGAAGAAGCTCAAGAAGCGCTAGGTGTTGATCGTCATGAATATGTTCCTGT 779
Query 1039 CACATACGTCTCTGAAATGGTCTGGTATCAAGAGTTCATGAGGTTTGCACCGACTTTGTT 1098
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 CACATATGTCTCTGAAATGGTCTGGTATCAAGAGTTCATGAGGTTTGCACCGACTTTATT 839
Query 1099 GCTCTTGGGTACTCTGATCTATGGTGCGAGACGGATGCAAGGTGGATTGGGTGTAGGAGG 1158
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 GCTCTTGGGTACTCTTATCTATGGGGCGAGACGGATGCAAGGTGGATTGGGTGTAGGAGG 899
Query 1159 AACTGGCGGTAAGAATGGTCGTGGAATTTTCAATATAGGCAAAGCTACAATAACGAGAGC 1218
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 900 AACCGGCGGTAAGAATGGTCGTGGAATTTTCAATATAGGCAAAGCCACAATAATAAGAGC 959
Query 1219 TGATAAACATTCCAAGAATAAGATTTATTTCAAGGATGTTGCTGGATGTGACGAGGCTAA 1278
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 960 GGATAAACATTCCAAGAATAAGATTTATTTTAAGGATGTTGCTGGATGTGATGAGGCTAA 1019
Query 1279 ACAAGAAATTATGGAGTTTGTACATTTCCTTAAGAACCCAAAGAAGTATGAAGATTTGGG 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACAAGAAATTATGGAGTTTGTACATTTCCTTAAGAACCCAAAGAAGTATGAAGATTTGGG 1079
Query 1339 TGCTAAAATTCCGAAAGGTGCACTTTTAGTCGGTCCGCCTGGAACCGGAAAGACCCTTTT 1398
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGCTAAAATTCCGAAAGGGGCACTTTTAGTCGGTCCGCCTGGAACCGGAAAGACCCTTTT 1139
Query 1399 AGCAAAAGCCACAGCAGGAGAATCTGGTGTGCCATTTCTGTCTATTTCTGGCTCAGATTT 1458
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCAAAAGCCACAGCGGGAGAATCGGGTGTGCCATTTCTGTCTATTTCTGGCTCAGATTT 1199
Query 1459 CATGGAGATGTTTGTTGGTGTTGGGCCTTCGAGGGTGAGACATTTGTTCCAAGAGGCGAG 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1200 CATGGAGATGTTTGTTGGTGTTGGGCCTTCGAGGGTGAGACATTTGTTCCAAGAGGCAAG 1259
Query 1519 ACAAGCTGCACCGAGCATTATATTTATCGATGAGATTGATGCTATTGGTCGGGCAAGAGG 1578
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1260 ACAAGCTGCACCGAGCATTATATTTATAGATGAGATTGATGCGATTGGTCGGGCAAGAGG 1319
Query 1579 TCGTGGAGGTTTAGGCGGAAATGATGAGCGTGAAAGCACTCTGAATCAGTTGCTAGTTGA 1638
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCGTGGAGGTTTAGGCGGTAACGATGAGCGTGAAAGCACTCTGAATCAGTTGCTAGTTGA 1379
Query 1639 AATGGATGGTTTTGGTACAACCGCTGGTGTTGTGGTTCTTGCTGGAACCAACAGACCGGA 1698
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1380 AATGGACGGTTTTGGTACAACCGCTGGAGTTGTGGTTCTTGCTGGGACCAACAGACCGGA 1439
Query 1699 TATTTTGGATAAAGCTTTGTTAAGGCCTGGACGTTTTGATCGCCAGATAACTATTGATAA 1758
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1440 TATTTTGGATAAAGCTTTGTTAAGGCCTGGCCGTTTTGATCGCCAGATAACCATTGATAA 1499
Query 1759 ACCTGATATCAAAGGGCGTGATCAGATTTTCAAGATTTACTTGAAGAAGATCAAACTTGA 1818
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1500 ACCTGATATTAAAGGGCGTGATCAGATTTTCCAGATTTACTTGAAGAAGATCAAACTTGA 1559
Query 1819 TCATGAGCCATCATATTACTCTCAAAGGCTTGCTGCTCTCACTCCCGGGTTTGCAGGAGC 1878
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1560 TCATGAGCCATCATATTACTCTCAAAGGCTTGCGGCTCTCACTCCCGGATTTGCTGGAGC 1619
Query 1879 TGACATTGCGAATGTCTGTAACGAAGCAGCTCTTATTGCTGCTAGACACGAAGGAGCAAC 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TGACATTGCGAATGTCTGTAACGAAGCAGCTCTTATTGCTGCTAGACACGAAGGAGCAAC 1679
Query 1939 GGTTACTATGGCACACTTTGAATCTGCGATTGATCGTGTTATTGGTGGTCTTGAGAAGAA 1998
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1680 GGTTACAATGGCACACTTTGAATCTGCAATTGATCGTGTTATTGGTGGTCTTGAGAAGAA 1739
Query 1999 AAACCGGGTGATAAGCAAGTTGGAGCGACGTACAGTTGCATATCATGAATCTGGTCACGC 2058
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1740 AAACCGGGTGATAAGCAAGTTGGAGCGACGTACGGTTGCATATCATGAATCTGGGCATGC 1799
Query 2059 AGTTGTAGGGTGGTTCCTTGAACATGCAGAGCCGTTACTGAAAGTGACTATTGTACCACG 2118
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1800 AGTTGTAGGATGGTTCCTCGAACATGCAGAGCCGTTGCTGAAAGTGACTATTGTACCACG 1859
Query 2119 TGGCACAGCGGCTCTCGGATTTGCACAATACGTTCCAAACGAAAACCTTCTCATGACCAA 2178
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1860 TGGCACAGCGGCTCTCGGATTTGCACAATATGTTCCAAACGAAAACCTTCTCATGACCAA 1919
Query 2179 AGAGCAACTCTTTGACATGACTTGCATGACTCTCGGAGGCCGTGCAGCTGAGCAGGTATT 2238
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1920 AGAGCAACTCTTTGACATGACTTGCATGACCCTCGGTGGCCGTGCAGCTGAGCAGGTATT 1979
Query 2239 GATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGACGAAGATGACTTA 2298
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1980 GATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGACAAAGATGACGTA 2039
Query 2299 CGCGCAAGTAGCTGTGTATGGTTTCAGTGACAAGGTTGGGCTACTCTCGTTTCCACCAAG 2358
|||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||
Sbjct 2040 TGCGCAAGTAGCTGTATACGGTTTCAGTGACAAGGTTGGCCTGCTCTCGTTTCCCCCAAG 2099
Query 2359 GGATGATGGCTACGACTTCTCTAAACCATACAGCAACAAAACCGGTGCTATCATAGACGA 2418
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2100 GGATGATGGCTACGACTTCTCTAAACCATACAGCAACAAAACAGGCGCTATCATAGACGA 2159
Query 2419 AGAAGTTAGGGACTGGGTGGCCAAAGCTTATGAGCGGACCGTAGAGCTGGTTGAGGAACA 2478
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 AGAAGTTAGGGAATGGGTGGCCAAAGCTTATGAGCGGACCGTAGAGCTGGTTGAGGAACA 2219
Query 2479 CAAAGTGAAAGTGGCTGAGATCGCCGAGCTTTTACTAGAGAAAGAGGTGTTGCATCAGGA 2538
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 CAAAGAGAAAGTGGCTCAGATCGCCGAGCTTTTACTAGAGAAAGAGGTGTTGCATCAGGA 2279
Query 2539 TGATCTCTTAAAAATTTTAGGTGAACGTCCGTTTAAGTCAGCTGAGGTCACTAATTATGA 2598
||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 2280 TGATCTCTTAAAAGTTTTAGGTGAACGTCCATTTAAGTCCGCTGAGGTGACTAATTATGA 2339
Query 2599 CCGGTTCAAGTCTGGGTTTGAAGAGACTGAGAAGGACTCAGCCGCCACCCCTACAGTGGA 2658
||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||
Sbjct 2340 CCGGTTCAAGTCTGGGTTTGAGGAGACTGAGAAGGACTCAGCCCCCACGCCGACAGTGGA 2399
Query 2659 GCCTGTGGTGGATGATGGAGCTCCCCCGCCGTTTGAACCCCAGGTTGTTCCGACGTA 2715
||||||||| ||||| |||||||| || ||| ||||||| |||||| ||||||||||
Sbjct 2400 GCCTGTGGTAGATGAAGGAGCTCCTCCTCCGCTTGAACCACAGGTTATTCCGACGTA 2456
> Ahg919477 jgi|Araly1|919477|scaffold_100758.1
Length=2482
Score = 2032 bits (1100), Expect = 0.0
Identities = 1958/2365 (83%), Gaps = 88/2365 (4%)
Strand=Plus/Plus
Query 395 CTTGAGGCGGCGTCTGTGAATGAAGTGGAAGGTGGATTAGGGTTTATAAGAAGACACTTT 454
||||||||||| | || ||| | ||||| ||||||||||||||| | || | ||||||
Sbjct 141 CTTGAGGCGGC--C-GTCAATCAGGTGGATGGTGGATTAGGGTTTCTGAGGCGGCACTTT 197
Query 455 GCTTCTTTAGCTTCACGGAAGGGTTTAG-TCAATAATGATTTGATTGGTGTTTTTGCTAA 513
|||||||||||| | |||||||| ||| | |||||| | | ||||| |||||
Sbjct 198 GCTTCTTTAGCTGCTCGGAAGGGACTAGAT-GCCGGTGATTTAAGCCGCGTTTTCGCTAA 256
Query 514 TCCAAGACTT-CGTAGATTCTTCTCT-GATGAAGCTCCTAAGAAGAAGAATTATGAGAAC 571
|| ||| || ||| | ||||| ||| | |||| || ||||| |||||||||||||||
Sbjct 257 CCCTAGA-TTGCGTCGGTTCTTTTCTAGCCAAAGC-CCGAAGAAAAAGAATTATGAGAAC 314
Query 572 TATTTTCCTAAAG--A-TAAGCAAGAACCCAAGAGTGATCAGAAATCAG-AGCATAAAGA 627
|| | ||| |||| | |||| ||| |||||||| ||| |||||||| | | | |||
Sbjct 315 TACTATCCAAAAGACAGTAAGAAAGCACCCAAGAATGAGCAGAAATCCGAATC-CGGAGA 373
Query 628 GGGTTCAGAA-AAGAATGAAAATGAGAATG-TGGGAGATATGTTCATGAACCG-AT-TCC 683
||||||| || ||||||||||| ||||||| |||| || ||||||| || | || | |
Sbjct 374 GGGTTCA-AAGAAGAATGAAAACGAGAATGTTGGG-GACATGTTCACCAA-GGAATAT-C 429
Query 684 AAAATTTGCTAATTCCTCT-ACTAGCTC-TTGCTGTATTCTTTTCTACTTTCTCGT-TTG 740
||||| || |||||||||| | | || | ||||| || || ||||||||||||| | |||
Sbjct 430 AAAATATGTTAATTCCTCTGA-TGGC-CATTGCTTTAATCCTTTCTACTTTCTC-TCTTG 486
Query 741 GCTCTGGGGAACAACAACAGATAAGTTTCCAGGAGTTCAAAAACAAGCTACTCGAGCCTG 800
| || | ||||| |||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 487 GTTCCCGAGAACAGCAACAGATTAGTTTCCAGGAGTTCAAAAACAAGCTCCTTGAGCCTG 546
Query 801 GTTTAGTTGACCACATAGATGTTTCAAACAAATCAGTAGCAAAAGTCTACGTGAGGAGCA 860
|| |||| || |||||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 547 GTCTAGTGGATCACATAGATGTTTCTAACAAATCAGTCGCGAAAGTCTATGTGAGGAGTT 606
Query 861 CACCGAAAGACC-AACAAAC--AACTGACGTTGTCCATGGTAATGGTAACGGTA-TTCCT 916
|||||||| ||| ||| ||| || || ||||| || ||| |||||| || | |||||
Sbjct 607 CACCGAAAAACCAAAC-AACGGAA--GAAGTTGTTCAAGGTCCTGGTAATGG-AGTTCCT 662
Query 917 GCTAAAAGAAC-TGGTGGTCAGTATAAGTACTACTTCAATATCGGTAGTGTTGATTCTTT 975
||| |||| || |||||||||||||||||||||||| ||||| ||||| ||||| | ||
Sbjct 663 GCT-AAAGGACGTGGTGGTCAGTATAAGTACTACTTTAATATTGGTAGCGTTGAAACATT 721
Query 976 TGAGGAGAAACTCGAAGAAGCTCAAGAAGCGTTAGGTGTTGA-TCGTCATGAATATGTTC 1034
|||||||||||| ||||| |||||||||||| |||| ||| | || |||||| | |||||
Sbjct 722 TGAGGAGAAACTTGAAGAGGCTCAAGAAGCGATAGGCGTTAATTC-TCATGACTTTGTTC 780
Query 1035 CTGTCACATACGTCTCTGAAATGGTCTGGTATCAAGAGTTCATGAGGTTTGCACCGACTT 1094
||||||| |||||||| |||||| ||||||| || || | ||||||||||||||||||
Sbjct 781 CTGTCACCTACGTCTCGGAAATGATCTGGTACCAGGAAATGTTGAGGTTTGCACCGACTT 840
Query 1095 T-GTTGCTCTTGGGTACTCTGATCTATGGTGCGAGACGGATGCAAGGTGGA-T-TG-GGT 1150
| || ||||||||||| || || ||||| || |||||||||||||||||| | | |||
Sbjct 841 TACTT-CTCTTGGGTACGCTAATTTATGGGGCAAGACGGATGCAAGGTGGACTGGGAGGT 899
Query 1151 GTAGGAGGAACTGGCGGTAAGAATGGTCGTGGAATTTTCAATATAGGCAAAGCTAC-AAT 1209
||||| ||| |||| || ||| ||| |||||||||||||||||||| |||||| | |||
Sbjct 900 GTAGGCGGACCTGGTGGGAAGGGTGGCCGTGGAATTTTCAATATAGGGAAAGCT-CAAAT 958
Query 1210 AACGAGAGCTGATAAACATTCCAAGAATAAGATTTATTTCAAGGATGTTGCTGGATGTGA 1269
|||||||| |||||| |||||||||||||||| ||||| || |||||||| ||||||||
Sbjct 959 TACGAGAGCAGATAAAAATTCCAAGAATAAGATATATTTTAAAGATGTTGCGGGATGTGA 1018
Query 1270 CGAGGCTAAACAAGAAATTATGGAGTTTGTACATTTCCTTAAGAACCCAAAGAAGTATGA 1329
||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||
Sbjct 1019 GGAGGCTAAACAAGAAATTATGGAATTTGTGCATTTCCTTCAGAACCCAAAGAAATATGA 1078
Query 1330 AGATTTGGGTGCTAAAATTCCGAAAGGTGCACTTTTAGTCGGTCCGCCTGGAACCGGAAA 1389
||||||||| |||||||| || |||||||| |||||||| || || || || || |||||
Sbjct 1079 AGATTTGGGAGCTAAAATCCCAAAAGGTGCGCTTTTAGTTGGCCCACCAGGGACGGGAAA 1138
Query 1390 GACCCTTTTAGCAAAAGCCACAGCAGGAGAATCTGGTGTGCCATTTCTGTCTATTTCTGG 1449
||||||| |||||||||| || || |||||||| | ||| || |||||||| || |||||
Sbjct 1139 GACCCTTCTAGCAAAAGCTACTGCGGGAGAATCAGCTGTACCGTTTCTGTCAATATCTGG 1198
Query 1450 CTCAGATTTCATGGAGATGTTTGTTGGTGTTGGGCCTTCGAGGGTGAGACATTTGTTCCA 1509
|||||||||||||| ||||||||||||||||| ||||| || |||||| | ||||| ||
Sbjct 1199 TTCAGATTTCATGGAAATGTTTGTTGGTGTTGGACCTTCAAGAGTGAGAAACTTGTTTCA 1258
Query 1510 AGAGGCGAGACAA-GCTGCACCGAGCATTATATTTATCGATGAGATTGATGCTATTGGTC 1568
|||||| |||||| | |||||| ||||| |||||||| |||||||| ||||| ||||| |
Sbjct 1259 AGAGGCTAGACAATG-TGCACCTAGCATAATATTTATTGATGAGATCGATGCGATTGGCC 1317
Query 1569 GGGCAAGAGGTCGTGGAGG-TT-T-AGGCGGAAATGATGAGCGTGAAAGCACTCTGAATC 1625
| ||||||||||||||||| || | || ||||||||||||||||||||||| || ||||
Sbjct 1318 GTGCAAGAGGTCGTGGAGGTTTCTCTGGTGGAAATGATGAGCGTGAAAGCACACTTAATC 1377
Query 1626 AGTTGCTAGTTGAAATGGATGGTTTTGGTACAACCGCTGGTGTTGTGGTTCTTGCTGGAA 1685
|| ||||||||||||||||||| |||||||| |||||||| ||||| || |||||||| |
Sbjct 1378 AGCTGCTAGTTGAAATGGATGGATTTGGTACTACCGCTGGAGTTGTCGTCCTTGCTGGGA 1437
Query 1686 CCAACAGACCGGATATT-TTGGATAAAGCTTTGTTAAGGCCTGGACGTTTTGATCGCCAG 1744
| ||||| || |||||| || ||||||||||| ||| | ||||| || ||||||||||||
Sbjct 1438 CTAACAGGCCAGATATTCTT-GATAAAGCTTTATTACGACCTGGCCGGTTTGATCGCCAG 1496
Query 1745 ATAACTATTGATAAACCTGATATCAAAGGGCGTGATCAGATTTTCAAGATTTACTTGAAG 1804
||||| || |||||||||||||| ||||| ||||||||||| ||| |||| ||| |||||
Sbjct 1497 ATAACCATAGATAAACCTGATATTAAAGGCCGTGATCAGATATTCCAGATATACCTGAAG 1556
Query 1805 AAGATCAAACTTGATCATGAGCCATCATATTACTCTCAAAGGCTTGCTGCTCTCACTCCC 1864
||||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||
Sbjct 1557 AAGATCAAACTTGATCACGAGCCCTCATATTACTCGCAAAGGCTTGCAGCCCTCACTCCC 1616
Query 1865 GGGTTTGCAGGAGCTGACATTGCGAATGTCTGTAACGAAGCAGCTCTTATTGCTGCTAGA 1924
|| ||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1617 GGATTTGCTGGAGCTGACATTGCGAATGTCTGTAACGAGGCGGCTCTTATTGCTGCCAGA 1676
Query 1925 CACGAAGGAGCAACGGTTACTATGGCACACTTTGAATCTGCGATTGATCGTGTTATTGGT 1984
|| ||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1677 CATGAAGGAGCAACAGTTACAATGGCACACTTTGACTCTGCAATTGATCGTGTTATTGGA 1736
Query 1985 GGTCTTGAGAAGAAAAACCGGGTGATAAGCAAGTTGGAGCGACGTACAGTTGCATATCAT 2044
||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 1737 GGTCTGGAGAAGAAAAACCGGGTAATAAGCAAGCAGGAGCGCCGTACAGTTGCATATCAT 1796
Query 2045 GAATCTGGTCACGCAGTTG-TAGGGTGGTTCCTTGAACATGCAGAGCCGTTACTGAAA-G 2102
|||||||| ||||| |||| | || |||||||| |||||||| || || || || ||| |
Sbjct 1797 GAATCTGGCCACGCGGTTGCT-GGTTGGTTCCTGGAACATGCGGAACCATTGCT-AAAGG 1854
Query 2103 TGACTATTGTACCACGTGGCACAGCGGCTCTCGGATTTGCACAATACGTTCCAAACGAAA 2162
|||||||||| || ||||||||||| || ||||| ||||| || || |||||||| ||||
Sbjct 1855 TGACTATTGTTCCTCGTGGCACAGCAGCGCTCGGGTTTGCCCAGTATGTTCCAAATGAAA 1914
Query 2163 ACCTT-CTCATGACCAAAGAGCAACTCTTTGACATGACTTGCATGACTCTCGGAGGCCGT 2221
| ||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1915 A-CTTGCTCATGACAAAAGAACAACTCTTTGACATGACTTGCATGACTCTCGGGGGCCGG 1973
Query 2222 GCAGCTGAGCAGGTATTGATAGGTAA-AATCTCAAC-GGGTGCGCAGAACGATCTAGAGA 2279
|||||||| |||||||| ||||| || ||| || || ||| || ||||||||||| || |
Sbjct 1974 GCAGCTGAACAGGTATTAATAGG-AAGAATATCGACCGGG-GCTCAGAACGATCTGGAAA 2031
Query 2280 AGGTGACGAAGATGACTTACGCGCAAGTAGCTGTGTATGGTTTCAGTGACAAGGTTGGGC 2339
||||||| |||||||||||||||||||| || ||||| || ||||| |||||| | |||
Sbjct 2032 AGGTGACTAAGATGACTTACGCGCAAGTGGCGGTGTACGGATTCAGCGACAAGATAGGGT 2091
Query 2340 TACTCTCGTTTCCACCAA-GGGATGATGGCTACGACTTCTCTAAACCATACAGCAACAAA 2398
| || || || || | || |||| | | |||| ||||| || || |||||||||| |
Sbjct 2092 TGCTTTCATTCCCGC-AACGGGA--A-G---ACGAGTTCTCCAAGCCGTACAGCAACAGA 2144
Query 2399 ACCGGTGCTATCATAGACGAAGAAGTTAGGGACTGGGTGGCCAAAGCTTATGAGCGGACC 2458
|| ||||| || ||||| ||||| || | || ||||||| |||||||| | |||||
Sbjct 2145 ACTGGTGCGATGATAGATGAAGAGGTCCGAGAATGGGTGGGGAAAGCTTACAAACGGACG 2204
Query 2459 GTAGAGCTGGTTGAGGAACACAAAGTGAAAGTGGCTGAGATCGCCGAGCTTTTACTAGAG 2518
|| |||||| | ||||||||||||| | |||||||| ||||||| ||||| || ||||||
Sbjct 2205 GTTGAGCTGATCGAGGAACACAAAGAGGAAGTGGCTCAGATCGCTGAGCTCTTGCTAGAG 2264
Query 2519 AAAGAGGTGT-TGCATCAGGATGATCTCTTAA-AAATT-TTAGGTGAACGTCCGTTTAAG 2575
|| ||||| | |||||||||||||||| | | ||| | || ||||| ||||| ||||||
Sbjct 2265 AAGGAGGT-TCTGCATCAGGATGATCT-T-ACTAAAGTATTGGGTGAGCGTCCATTTAAG 2321
Query 2576 TCAGCTGAGGTCA-CTAATTATGACCGGTTCAAGTCTGGGTTTGAAGAGACTGAGAAGGA 2634
|| | |||| || | ||||| ||| |||| || ||||| ||||||||||| ||||||||
Sbjct 2322 TCGGGTGAGA-CAACGAATTACGACAGGTTTAAATCTGGATTTGAAGAGACGGAGAAGGA 2380
Query 2635 CT-C-AGCCGCCACCCC-TACAG-TGGAGCCTGTGGTGGATGATGGAGCTCCCCCGCCGT 2690
| || | | | | | | || ||||||||| ||||||||||| ||| |||| |
Sbjct 2381 GAGCCAGAAGG-AGTCTGTGCCGGTGAAGCCTGTGGAGGATGATGGAGTTCCACCGC--T 2437
Query 2691 TTGAACCCCAGGTTGTTCCGACGTA 2715
| || || ||||| |||||||||||
Sbjct 2438 T-GAGCCACAGGTGGTTCCGACGTA 2461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113280388630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5