BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29090.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481828 jgi|Araly1|481828|fgenesh2_kg.4__888__AT2G29090.1 2279 0.0
> Ahg481828 jgi|Araly1|481828|fgenesh2_kg.4__888__AT2G29090.1
Length=1541
Score = 2279 bits (1234), Expect = 0.0
Identities = 1430/1524 (94%), Gaps = 15/1524 (1%)
Strand=Plus/Plus
Query 335 GAATAATGCAAATCTCATCTTCATCGTCTTCA--AATTTC-TTCTCTTCTCTTTATGCTG 391
||||||||||||||||||| ||||| || ||| |||||| ||||| ||| |||||| ||
Sbjct 21 GAATAATGCAAATCTCATCATCATCATCATCATTAATTTCTTTCTCCTCTATTTATGTTG 80
Query 392 ATGAACCGGCACTAATCACATTAAC-AAT-T-GT--T-GTAGTAGTAGTAGTGTTACTAT 445
||||| |||||||||||||| |||| | | | || | || ||| ||||||||||||||
Sbjct 81 ATGAATCGGCACTAATCACAATAACGAGTGTAGTAGTAGTGGTAATAGTAGTGTTACTAA 140
Query 446 TTAAATGGTGGTTGCACTGGAAAGAGCAAAGACTACGGCTACCTCCTGGCTCCATGGGGT 505
|| |||||||| ||||| ||||||||||||||| | ||||||| ||||||||||||||||
Sbjct 141 TTCAATGGTGGCTGCACCGGAAAGAGCAAAGACGAAGGCTACCGCCTGGCTCCATGGGGT 200
Query 506 TGCCTTACATCGGAGAGACACTCCGCCTCTACACAGAAAATCCCAATTCCTTCTTCGCCA 565
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 201 TGCCTTACATCGGAGAGACACTCCGCCTCTACACAGAGAATCCCAATTCCTTCTTCGCCA 260
Query 566 CTCGCCAAAACAAGTACGGGGATATATTCAAGACGCACATATTAGGATGTCCATGTGTGA 625
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 261 CTCGCCAAAACAAGTATGGGGAGATATTCAAAACGCACATATTAGGATGTCCATGTGTGA 320
Query 626 TGATAAGTAGTCCAGAGGCGGCTCGAATGGTGTTAGTGAGCAAAGCTCACTTGTTCAAGC 685
||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 321 TGATAAGTAGTCCTGAGGCGGCCCGGATGGTGTTAGTGAGCAAAGCTCACTTGTTTAAGC 380
Query 686 CAACTTATCCTCCAAGCAAAGAGCGTATGATTGGACCAGAGGCTCTTTTCTTCCACCAAG 745
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 381 CTACTTATCCTCCTAGCAAAGAGCGTATGATTGGACCAGAGGCTCTCTTCTTCCACCAAG 440
Query 746 GTCCATACCATTCTACCCTTAAGCGGCTGGTCCAGTCTTCTTTCATGCCTTCTGCTCTCA 805
|||| |||||||||||||| |||||||| || |||||||| |||||||||||||||||||
Sbjct 441 GTCCGTACCATTCTACCCTCAAGCGGCTCGTTCAGTCTTCCTTCATGCCTTCTGCTCTCA 500
Query 806 GACCAACCGTCTCTCACATCGAGCTCCTTGTCCTCCAAACCCTTTCCTCTTGGACGTCCC 865
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 501 GACCAACCGTGTCTCACATCGAGCTCCTTGTCCTCCAAACTCTATCCTCTTGGACATCCC 560
Query 866 AAAAGTCCATCAACACCCTCGAATACATGAAACGATATGCATTCGATGTGGCGATCATGT 925
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 561 AAAAGTCCATCAACACCCTCGAATACATGAAACGATATGCATTCAATGTGGCGATCATGT 620
Query 926 CAGCGTTCGGGGACAAAGAGGAGCCCACTACGATTGATGTTATTAAGCTTCTCTATCAAC 985
||||||||||||||||||||||||||||| | ||||| | ||||||| |||||||||||
Sbjct 621 CAGCGTTCGGGGACAAAGAGGAGCCCACTGCAATTGAAGCAATTAAGCATCTCTATCAAC 680
Query 986 GTCTCGAAAGGGGTTACAACTCCATGCCTCTCGACCTACCGGGCACACTTTTTCATAAGT 1045
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 681 GTCTCGAAAGAGGTTACAACTCCATGCCTCTCGACCTACCGGGCACACTTTTTCATAAAT 740
Query 1046 CCATGAAGGCAAGAATAGAATTAAGCGAGGAACTAAGGAAAGTAATagagaagagaagag 1105
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 741 CCATGAAGGCAAGAAGAGAATTAAGCGAGGAACTAAGGAAAGTGATAGAGAAGAGAAGAG 800
Query 1106 agaatgggagagaagaagGAGGACTATTGGGAGTACTTCTGGGAGCAAAGGATCAAAAAC 1165
||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 801 AGAATGGGAGAGAAGGAGGAGGACTATTGGGAGTACTTCTCGGAGCAAAGGATAAAAAAC 860
Query 1166 GCAACGGCTTAAGTGATTCACAGAT-TGCTGACAACATCATCGGTGTTATATTCGCCGCC 1224
|||| |||||||| ||||||||||| | | ||||||||||| |||||||| |||||||||
Sbjct 861 GCAATGGCTTAAGCGATTCACAGATCT-CCGACAACATCATTGGTGTTATCTTCGCCGCC 919
Query 1225 ACCGACACCACCGCTTCTGTCTTAACTTGGCTTCTCAAGTACTTACACGACCACCCCAAT 1284
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 ACTGACACCACCGCTTCTGTCTTAACTTGGCTTCTCAAGTACTTACACGACCACCCCAAT 979
Query 1285 CTCCTCCAAGAAGTCTCCAGGGAGCAATTCAGCATTCGACAGaaaataaaaaaagaaaaC 1344
|| ||||||||||| || ||||||||| || |||||||||| ||||||| ||||||||||
Sbjct 980 CTACTCCAAGAAGTTTCGAGGGAGCAAGTCGGCATTCGACAAAAAATAATAAAAGAAAAC 1039
Query 1345 CGAAGAATCTCATGGGAAGATACAAGAAAAATGCCACTGACCACTAGGGTGATACAAGAG 1404
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1040 CGAGGAATCTCATGGGAAGATACAAGAAAAATGCCACTGACCACAAGGGTGATACAAGAG 1099
Query 1405 ACACTAAGAGCAGCAAGTGTACTGTCCTTTACATTTAGAGAAGCAGTACAAGACGTCGAA 1464
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1100 ACACTAAGAGCAGCAAGTGTATTGTCCTTTACATTTAGAGAAGCAGTACAAGACGTCGAA 1159
Query 1465 TAT-GATGGCTACTTGATCCCAAAGGGTTGGAAGGTTCTTCCTCTTTTCCGGCGAATCCA 1523
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 T-TCGATGGCTACTTGATCCCAAAGGGTTGGAAGGTTCTTCCTCTTTTCCGGCGAATCCA 1218
Query 1524 TCACTCCTCCGAATTCTTCCCCGATCCTGAAAAATTCGATCCTTCTAGATTCGAGGTGGC 1583
|||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||
Sbjct 1219 TCACTCCTCCGAATTCTTCCCCAATCCCGAAAAGTTTGATCCTTCTAGATTCGAGGTGGC 1278
Query 1584 ACCAAAACCTTACACGTACATGCCATTCGGAAATGGAGTGCACTCATGTCCAGGAAGTGA 1643
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1279 ACCAAAACCTTACACGTATATGCCATTTGGAAATGGAGTGCACTCATGTCCAGGAAGTGA 1338
Query 1644 GCTGGCTAAACTTGAGATGCTTATCCTCCTTCACCACCTCACTACTTCCTTCAGATGGGA 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 GCTGGCTAAACTTGAGATGCTTATCCTCCTTCACCACCTCACTACTTCCTTCAGATGGGA 1398
Query 1704 AGTGATTGGAGATGAAGAAGGTATACAGTATGGTCCTTTCCCTGTACCCAAGAAGGGTTT 1763
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 AGTGATAGGAGGTGAAGAAGGTATACAGTATGGTCCTTTCCCTGTACCCAAGAAGGGTTT 1458
Query 1764 ACCAATAAGAGTAACCCCGATTTAAGCCTAAGGCATATTTGGGAttttttttACT-AGTC 1822
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 1459 ACCAATAAGAGTAACCCCGATTTAAGCCTAAGGCATATTTGG-ATTTTTTTTTTTTAGTC 1517
Query 1823 CAATAAGTCATCTTTAATTTCTCT 1846
|||||||||||||||||||||||
Sbjct 1518 GAATAAGTCATCTTTAATTTCTCT 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5