BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29125.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481830 jgi|Araly1|481830|fgenesh2_kg.4__890__AT2G29125.1 996 0.0
Ahg470775 jgi|Araly1|470775|fgenesh2_kg.1__729__AT1G07485.1 86.1 3e-16
> Ahg481830 jgi|Araly1|481830|fgenesh2_kg.4__890__AT2G29125.1
Length=675
Score = 996 bits (539), Expect = 0.0
Identities = 639/684 (93%), Gaps = 19/684 (3%)
Strand=Plus/Plus
Query 15 tctctctctctctctGAATCACTATCTCTT-CTGCGAGTTCAATCACCACAAACTCACAA 73
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTGAATCACTATCTCTTCCT-CGAGTTCAATCACCACAAACTCACAA 59
Query 74 TCAAATACAACAGAAAC--ACA-CTTAAGACC-CAT-TCATCTGGATCTGAACACATTAT 128
|||||||| || | | | | || || ||| || || |||| | | |||||||||
Sbjct 60 TCAAATAC-AC-TCATCTGA-ATCTGAA-ACCGAATCTC-TCTGCAGAAGCACACATTAT 114
Query 129 TGATGGAGGAGAAGTGGAAGCTGTCGAAGAAAGACACAACAGCTTCTTCTTCCTCCTCTA 188
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 115 TGATGGAGGAGAAGTGGAAGCTGTCGAAGAAAGAGACAACAGCTTCTTCTTCCTCCTCTA 174
Query 189 AGTCAAAGTTTTCTAGAAGCTTCTCAACGAGTGCTTCCTCCACAAAGTCTCCAATATTCG 248
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 175 AGTCAAAGTTTTCTAGAAGCTTCTCAACAAGTGCTTCCTCCACAAAGTCTCCAATATTCG 234
Query 249 TAAGGAGTTCCTCTACTAAATGctctgttccttcttcctcctcgtcctcttcttcttcct 308
|||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 235 TAAGGAGTTCCTCTACCAAATGCTCTGTTCCTTCTTCCTCCTCTTCTTCTTCTTCTTCTT 294
Query 309 cttcaatctcaagaagcttctcaagaaaagagagaagatcttcttcttcatcatcttctt 368
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTTCTATCTCAAGAAGCTTCTCAAGAAAAGAGAGAAGATCTTCTTCTTCATCATCTTCTT 354
Query 369 ctATCACTCAGAAATATAGCAGCTTGGCTAAAGAACAGAAGGCAAGGTTTTACATCATGA 428
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CTATCACACAGAAATATAGCAGCTTGGCTAAAGAACAGAAGGCAAGGTTTTACATCATGA 414
Query 429 GAAGGTGTGTGGCTATGCTTGTTTGTTGGCACAAACATGGAGATTCTTAATTAGATCTTC 488
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 415 GAAGGTGTGTGGCTATGCTTGTTTGTTGGCACAAACATGGAGATTCTTAACTAGATCTTC 474
Query 489 ATCTTCTTCTGCCCCtttttttttGTTTCCTTGTAATTAGATCAGTTTGATTATTAAGGG 548
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 ATCTTCTTCTTCC--TTTTTTTT-GTTTCCTTGTAATTAGATCAGTTTGATTATTAAGGG 531
Query 549 TTTCCATACAAGTACATTGTAAGAAGAGTTTTTGTTTAAAAAATT-AGGGTTTCTATGCT 607
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 532 TTTCCATACAAGTACATTGTAAGAAGAGATTTTGTTAAAAAAATTTAGGGTTTCTATGCT 591
Query 608 CAtttttttCAATTAAATGACTTGCATATGCTACATATATACACAATCATAGACATGTGT 667
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 592 AATTTTTTTCAATTATATGACTTGCATATGCTACATATATACACAATCATAGATATGTGT 651
Query 668 G-TGTAT--GTATCATTGATGCAA 688
| ||||| |||||||| ||||||
Sbjct 652 GGTGTATATGTATCATTAATGCAA 675
> Ahg470775 jgi|Araly1|470775|fgenesh2_kg.1__729__AT1G07485.1
Length=567
Score = 86.1 bits (46), Expect = 3e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 416 TTTTACATCATGAGAAGGTGTGTGGCTATGCTTGTTTGTTGGCACAAACATG 467
||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 202 TTTTACATCATGAGAAGGTGTGTGGCTATGCTTGTATGTTGGCATAAACATG 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5