BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29160.1
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1 230 4e-59
Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1 226 5e-58
Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1 226 5e-58
Ahg952161 jgi|Araly1|952161|scaffold_4100005.1 217 3e-55
Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2 204 3e-51
> Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1
Length=804
Score = 230 bits (124), Expect = 4e-59
Identities = 153/167 (92%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 1125 ATGTGCCAGAGATGACACTCAGCTTAAAGAACGCTTACGTAAATGGCAA-GCAAAGGGTT 1183
|||||||||||| || ||||||||| |||||||||||||| | |||||| | ||||||||
Sbjct 141 ATGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAGTGGCAAGGAAAAGGGTT 200
Query 1184 TCAGGTCACCACTTCTGTCTGCGACGTTTCTTCTCGTGACCAACGAGAGAAACTCATGGA 1243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCAGGTCACCACTTCTGTATGCGACGTTTCTTCTCGTGACCAACGAGAGAAACTCATGGA 260
Query 1244 AACCGTTTCCTCTCTTTTTCAAGGAAAACTTAACATCCTTGAAAGta 1290
||||||||||||| | || ||||||||||| |||||||| | |||||
Sbjct 261 AACCGTTTCCTCTATCTTCCAAGGAAAACTCAACATCCTCGTAAGTA 307
Score = 219 bits (118), Expect = 9e-56
Identities = 159/179 (89%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 458 TCAATGATGAAGAG-TTAAAGAAAGAAGTGGAGCGTAAGACACCAATGGGACGTGTTGGA 516
||| |||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 626 TCAGTGATGAAGAGTTTAAA-AAAGCAGTGGAGAGTAAGACACCAATGGGACGTGTTGGA 684
Query 517 AACGCAAATGAAGTATCATCGCTTGTCGCATTTCTCTGCTTTCCGGCTGCTTCGTATATA 576
|| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 685 AAAGCAAATGAAGTCTCATCGCTTGTCGCATTTCTCTGTTTTCCGGCAGCTTCTTATATA 744
Query 577 ACAGGTCAGACAATCTGCGTCGACGGAGGTTTCACGGTCAACTGCTTTTCTTTCAAGCC 635
|| |||||||| ||||| ||||| |||||| | |||| ||| |||| |||||||||||
Sbjct 745 ACGGGTCAGACTATCTGTGTCGATGGAGGTGCCTCGGTGAACGGCTTCTCTTTCAAGCC 803
> Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1
Length=1118
Score = 226 bits (122), Expect = 5e-58
Identities = 147/159 (92%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 1125 ATGTGCCAGAGATGACACTCAGCTTAAAGAACGCTTACGTAAATGGCAAG-CAAAGGGTT 1183
|||||||||||| || ||||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 241 ATGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCCAAAGGGTT 300
Query 1184 TCAGGTCACCACTTCTGTCTGCGACGTTTCTTCTCGTGACCAACGAGAGAAACTCATGGA 1243
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 301 TCAGGTCACCACTTCTGTCTGCGACGTCTCTTCTCGTGACCAACGAGTGAAACTCATGGA 360
Query 1244 AACCGTTTCCTCTCTTTTTCAAGGAAAACTTAACATCCT 1282
||| ||||||||||| | ||||||||||| ||||||||
Sbjct 361 AACTGTTTCCTCTCTCTACCAAGGAAAACTCAACATCCT 399
Score = 193 bits (104), Expect = 6e-48
Identities = 134/149 (90%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAAATCTCGACTCAGCTTTTCATCTCTCACAGCTCGCGCATCCTTTGTTGAAA 60
||||||||||||||||| |||||||| |||||||||||||| ||||| || |||||||||
Sbjct 470 ATGGCTACAAATCTCGAGTCAGCTTTCCATCTCTCACAGCTTGCGCACCCATTGTTGAAA 529
Query 61 GCATCTGGTTCAGGGAGCATCGTGCTCATGTCCTCTACTGCAGGGGTTGTACATATCAAT 120
|| || || |||||||||||||||||||||||||||||||| || || || ||| |||||
Sbjct 530 GCCTCCGGCTCAGGGAGCATCGTGCTCATGTCCTCTACTGCTGGAGTCGTGCATGTCAAT 589
Query 121 GTTGGTTCCATCTATGGAGCAACTAAAGG 149
||||| ||||||||||||||||| |||||
Sbjct 590 GTTGGATCCATCTATGGAGCAACCAAAGG 618
> Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1
Length=798
Score = 226 bits (122), Expect = 5e-58
Identities = 147/159 (92%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 1125 ATGTGCCAGAGATGACACTCAGCTTAAAGAACGCTTACGTAAATGGCAAGC-AAAGGGTT 1183
|||||||||||| || ||||||||| ||||||| |||||| |||||||||| ||||||||
Sbjct 141 ATGTGCCAGAGACGAAACTCAGCTTCAAGAACGATTACGTGAATGGCAAGCAAAAGGGTT 200
Query 1184 TCAGGTCACCACTTCTGTCTGCGACGTTTCTTCTCGTGACCAACGAGAGAAACTCATGGA 1243
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 201 TCAAGTCACCACTTCTGTCTGCGATGTTTCTTCTCGTGACCAACGAGAGAAACTCATGGA 260
Query 1244 AACCGTTTCCTCTCTTTTTCAAGGAAAACTTAACATCCT 1282
||||||| ||||||| || ||||||||||| ||||||||
Sbjct 261 AACCGTTGCCTCTCTCTTCCAAGGAAAACTCAACATCCT 299
Score = 198 bits (107), Expect = 1e-49
Identities = 152/173 (88%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 462 TGATGAAGAGTTAAAG-AAAGAAGTGGAGCG-TAAGACACCAATGGGACGTGTTGGA-AA 518
||||||| |||| ||| |||| ||||||| | ||||||||||||||||||||||||| ||
Sbjct 627 TGATGAAAAGTT-AAGAAAAGCAGTGGAG-GATAAGACACCAATGGGACGTGTTGGAGAA 684
Query 519 CGCAAATGAAGTATCATCGCTTGTCGCATTTCTCTGCTTTCCGGCTGCTTCGTATATAAC 578
| ||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||
Sbjct 685 -GTGAATGAAGTATCATCGCTTGTCGCATTTCTTTGTTTTCCGGCAGCTTCTTATATAAC 743
Query 579 AGGTCAGACAATCTGCGTCGACGGAGGTTTCACGGTCAACTGCTTTTCTTTCA 631
|||||||| |||||||||||||||||| || |||| ||| |||| |||||||
Sbjct 744 TGGTCAGACTATCTGCGTCGACGGAGGTGTCTCGGTGAACGGCTTCTCTTTCA 796
> Ahg952161 jgi|Araly1|952161|scaffold_4100005.1
Length=220
Score = 217 bits (117), Expect = 3e-55
Identities = 130/136 (96%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 247 AGGAGCTATGAATCAGCTAGCAAAAAACTTAGCATGCGAGTGGGCAAGGGATAACATAAG 306
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 80 AGGAGCTATGAATCAGCTAGCAAAAAACTTAGCATGCGAGTGGGCAAGTGATAACATAAG 139
Query 307 GGTTAATTCTGTCTGTCCATGGTTCATAGCAACTCCTTTAGCTAACATTGTAAGGCAATA 366
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 140 GGTTAACTCTGTCTGTCCATGGTTCATAGCAACTCCTTTAGCTAACAATGTAAGGCAATA 199
Query 367 AAATGAGaaaaa-aaa 381
| || ||||||| |||
Sbjct 200 AGATCAGAAAAAGAAA 215
Score = 110 bits (59), Expect = 6e-23
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 76 AGCATCGTGCTCATGTCCTCTACTGCAGGGGTTGTACATATCAATGTTGGTTCCATCTAT 135
|||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 9 AGCATCGTACTCATGTCCTCCGCTGCAGGGGTTATGCATATCAATGTTGGTTCCATCTAT 68
Query 136 GGAGCAACTAAAGG 149
||||||||||||||
Sbjct 69 GGAGCAACTAAAGG 82
> Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2
Length=1329
Score = 204 bits (110), Expect = 3e-51
Identities = 144/160 (90%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 1125 ATGTGCCAGAGATGACACTCAGCTTAAAGAACGCTTACGTAAATGGCAAG-CAAAGGGTT 1183
|||||||||||| || ||||||||| ||||||| || | | ||||||||| ||||||||
Sbjct 614 ATGTGCCAGAGACGAGACTCAGCTTCAAGAACGTTTGCTTGAATGGCAAGAAAAAGGGTT 673
Query 1184 TCAGGTCACCACTTCTGTCTGCGACGTTTCTTCT-CGTGACCAACGAGAGAAACTCATGG 1242
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 674 TCAGGTCACCACTTCTGTCTGCGACGTTTCT-CTGCGTGACCAACGAGAGAAACTCATCG 732
Query 1243 AAACCGTTTCCTCTCTTTTTCAAGGAAAACTTAACATCCT 1282
|||||||||||||||| || ||||||||||| || |||||
Sbjct 733 AAACCGTTTCCTCTCTCTTCCAAGGAAAACTCAATATCCT 772
Score = 130 bits (70), Expect = 4e-29
Identities = 85/92 (92%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 1373 AACAATGCTGGTACGTTTATACTCAAGCCGACCATTGAGTATACAGCAGAAGAATAT-TC 1431
|||||||| || ||||||||||| |||||||||| ||||||||||||||||||| | ||
Sbjct 777 AACAATGCAGGAACGTTTATACTTAAGCCGACCACAGAGTATACAGCAGAAGAAT-TCTC 835
Query 1432 GTTTATAATGGCTACAAATCTCGAGTCAGCTT 1463
||||||||||||||||||||||||||||||||
Sbjct 836 GTTTATAATGGCTACAAATCTCGAGTCAGCTT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5