BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29170.1
Length=326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1 455 9e-128
Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1 440 3e-123
Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1 377 2e-104
Ahg481852 jgi|Araly1|481852|fgenesh2_kg.4__912__AT2G29360.1 359 8e-99
Ahg933391 jgi|Araly1|933391|scaffold_401379.1 126 8e-29
> Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1
Length=804
Score = 455 bits (246), Expect = 9e-128
Identities = 287/307 (93%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 3 ATGGCTAAAG-CAGAAGAAAACTTGAGAGACAAATGTAGATGGAGCCTTGGAGGCATGAC 61
|||||| ||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCT-AAGACAGGAGAAAACTTGACAGACAAATCTAGATGGAGCCTTGGAGGCATGAC 59
Query 62 CGCTCTCGTTACCGGTGGCTCCAAAGGCCTCGGGGAAGCTGTGGTGGAGGAACTAGCCAT 121
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 CGCTCTTGTGACCGGTGGCTCCAAAGGCCTCGGAGAAGCTGTGGTGGAGGAACTAGCCAT 119
Query 122 GTTAGGAGCAAGAGTCCACACATGTGCTAGAAACGAAACTCAGCTTCAAGAATGCGTACG 181
||| ||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||
Sbjct 120 GTTGGGAGCAAGAGTCCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACG 179
Query 182 TGAATGGCAAGCTAAAGGGTTTGAGGTCACCACTTCTGTATGCGACGTTTCTTCTCGTGA 241
||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAGTGGCAAGGAAAAGGGTTTCAGGTCACCACTTCTGTATGCGACGTTTCTTCTCGTGA 239
Query 242 CCAACGAGAGAAACTCATGGAAAACGTTGCCTCTATCTTCCAAGGAAAACTCAACATCCT 301
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 240 CCAACGAGAGAAACTCATGGAAACCGTTTCCTCTATCTTCCAAGGAAAACTCAACATCCT 299
Query 302 TGTAAGT 308
||||||
Sbjct 300 CGTAAGT 306
> Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1
Length=798
Score = 440 bits (238), Expect = 3e-123
Identities = 283/305 (93%), Gaps = 2/305 (1%)
Strand=Plus/Plus
Query 3 ATGGCTAAAG-CAGAAGAAAACTTGAGAGACAAATGTAGATGGAGCCTTGGAGGCATGAC 61
|||||| ||| ||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 ATGGCT-AAGACAGGAGAAAACTTGAGAGACAAATCTAGATGGAGCCTTGAAGGCATGAC 59
Query 62 CGCTCTCGTTACCGGTGGCTCCAAAGGCCTCGGGGAAGCTGTGGTGGAGGAACTAGCCAT 121
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 60 CGCTCTTGTTACCGGTGGCTCCAAAGGCCTCGGAGAAGCTGTAGTGGAGGAACTAGCCAT 119
Query 122 GTTAGGAGCAAGAGTCCACACATGTGCTAGAAACGAAACTCAGCTTCAAGAATGCGTACG 181
||| ||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||
Sbjct 120 GTTTGGAGCAAGAGTCCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAACGATTACG 179
Query 182 TGAATGGCAAGCTAAAGGGTTTGAGGTCACCACTTCTGTATGCGACGTTTCTTCTCGTGA 241
|||||||||||| ||||||||| | |||||||||||||| ||||| ||||||||||||||
Sbjct 180 TGAATGGCAAGCAAAAGGGTTTCAAGTCACCACTTCTGTCTGCGATGTTTCTTCTCGTGA 239
Query 242 CCAACGAGAGAAACTCATGGAAAACGTTGCCTCTATCTTCCAAGGAAAACTCAACATCCT 301
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 240 CCAACGAGAGAAACTCATGGAAACCGTTGCCTCTCTCTTCCAAGGAAAACTCAACATCCT 299
Query 302 TGTAA 306
||||
Sbjct 300 CGTAA 304
> Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1
Length=819
Score = 377 bits (204), Expect = 2e-104
Identities = 261/289 (90%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 18 GAAAACTTGAGAGACAAATGTAGATGGAGCCTTGGAGGCATGACCGCTCTCGTTACCGGT 77
|||| ||||||||||||| ||||||||| |||| ||||||||| ||||| |||||||||
Sbjct 16 GAAAGCTTGAGAGACAAACCTAGATGGAGTCTTGAAGGCATGACTGCTCTTGTTACCGGT 75
Query 78 GGCTCCAAAGGCCTCGGGGAAGCTGTGGTGGAGGAACTAGCCATGTTAGGAGCAAGAGTC 137
|||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 76 GGCTCCAAAGGCATCGGAGAAGCTGTGGTGGAGGAACTAGCCATGTTTGGAGCAAGAGTT 135
Query 138 CACACATGTGCTAGAAACGAAACTCAGCTTCAAGAATGCGTACGTGAATGGCAAGCTAAA 197
||||||||||| ||| |||||||||||||||||||| || |||||||||||||||| |||
Sbjct 136 CACACATGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCCAAA 195
Query 198 GGGTTTGAGGTCACCACTTCTGTATGCGACGTTTCTTCTCGTGACCAACGAGAGAAACTC 257
||||| | |||||||||||||| ||||| ||||||||||||||||| |||| |||||||
Sbjct 196 GGGTTACAAGTCACCACTTCTGTTTGCGATGTTTCTTCTCGTGACCAGCGAGTGAAACTC 255
Query 258 ATGGAAAAC-GTTGCCTCTATCTTCCAAGGAAAACTCAACATCCTTGTA 305
||||||| | ||| ||||| ||||||||||||||||||||||||| |||
Sbjct 256 ATGGAAA-CTGTTTCCTCTCTCTTCCAAGGAAAACTCAACATCCTCGTA 303
> Ahg481852 jgi|Araly1|481852|fgenesh2_kg.4__912__AT2G29360.1
Length=864
Score = 359 bits (194), Expect = 8e-99
Identities = 272/309 (88%), Gaps = 7/309 (2%)
Strand=Plus/Plus
Query 1 AAATGGCTAAAGCAGA-AGAAAACTTGAGAGACAAATGTAGATGGAGCCTTGGAGGCATG 59
||||||| |||| ||| |||| ||||||||||||| ||||||||| |||| |||||||
Sbjct 45 AAATGGC-AAAG-AGATGGAAAGCTTGAGAGACAAACCTAGATGGAGTCTTGTAGGCATG 102
Query 60 ACCGCTCTCGTTACCGGTGGCTCCAAAGGCCTCGGGGAAGCTGTGGTGGAGGAACTAGCC 119
|||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 103 ACCGCTCTTGTTACCGGTGGCTCCAAAGGCATCGGAGAAGCTGTGGTGGAGGAACTAGCT 162
Query 120 ATGTTAGGAGCAAGAGTCCACACATGTGCTAGAAACGAAACTCAGCTTCAAGAATGCGTA 179
||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| || ||
Sbjct 163 ATGTTAGGAGCAAGAGTCCACACATGTGCCAGAGACGAAACTAAGCTTCAAGAAAGCTTA 222
Query 180 CGTGAA-TGGCAAGCTAAAGGGTTTGAGGTCACCACTTCTGTATGCGACGTTTCTTCTCG 238
||| || |||||||| ||||||||| |||| ||||||||||| | |||| ||||||||||
Sbjct 223 CGT-AACTGGCAAGCAAAAGGGTTTCAGGTTACCACTTCTGTTTCCGACATTTCTTCTCG 281
Query 239 TGACCAACGAGAGAAACTCATGGAAAAC-GTTGCCTCTATCTTCCAAGGAAAACTCAACA 297
|| ||||||||||||||| ||||||| | ||| || | ||||| ||||||||||||| |
Sbjct 282 TGGCCAACGAGAGAAACTTATGGAAA-CTGTTTCCACGATCTTTGAAGGAAAACTCAATA 340
Query 298 TCCTTGTAA 306
| |||||||
Sbjct 341 TACTTGTAA 349
> Ahg933391 jgi|Araly1|933391|scaffold_401379.1
Length=460
Score = 126 bits (68), Expect = 8e-29
Identities = 78/83 (94%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 13 CAGAAGAAAACTTGAGAGACAAATGTAGATGGAGCCTTGGAGGCATGACCGCTCTCGTTA 72
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 253 CAGAAGAAAATTTGAGAGACAATTCTAGATGGAGCCTTGGAGGCATGACCGCTCTCGTAA 312
Query 73 CCGGTGGCTCCAAAGGCCTCGGG 95
|||||||||| ||||||||||||
Sbjct 313 CCGGTGGCTCGAAAGGCCTCGGG 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11522987878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5