BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29180.1
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952162 jgi|Araly1|952162|scaffold_4100006.1 815 0.0
Ahg933392 jgi|Araly1|933392|scaffold_401380.1 791 0.0
> Ahg952162 jgi|Araly1|952162|scaffold_4100006.1
Length=544
Score = 815 bits (441), Expect = 0.0
Identities = 505/535 (94%), Gaps = 8/535 (1%)
Strand=Plus/Plus
Query 41 GTGGGAGTGGACGGAAAGATGTCTGCGACAACAACACCATCTCTATCTCTTTCAAATTTC 100
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3 GTGGGAGTGGACGGAAAGATGTCTGCAACAACAACACCATCTCTATCTCTTTCAAATTTC 62
Query 101 AGACCAAGATTCCAA-ACTCCAGTTAAAGGCCACCATATATCTCCACTCTCTTGGTCTGT 159
||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 63 AGACCAAGATTCCAACA-TCCAGTTAAACCCCACCATATATCTCCACTCTCTTGGTCTGT 121
Query 160 TTCAAGAAGAAAGATCTTGTCTTTTAGGGTTCTTCGTCTTCACCAAGAAAAAACCCAACT 219
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 122 TTCAAGAAGAAAGATCTTGTCTTCAAGGGTTCTTCGTCTTCACCAGGAAAAAACCCAACT 181
Query 220 ATGGAGAGTCTCTGCAACTCCGGAAGAAATTTCCCAAGAGATCGTTTCTTCTGATTCATC 279
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 182 ATGGAGAGTCTCTGCAACTCCGGAAGAAATTTCTCAAGAGATCGTTTCTTCTGATTC-T- 239
Query 280 TTCTTCTTCTGGAGCAGTTGTGTCTAGTGGTGGACAAGATGGTGTTGCTTTGATTATACA 339
| | ||| | |||| ||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 240 T-CATCT---GAAGCAATTGTGTCAAGTGGTGGTCAAGATGGTGTTGCTCTGATTATACA 295
Query 340 AGTGCTTCTCTTTGTTGCATTTCTTGCTCTCACGGTTCTCACCATTGGTGTTGTGTACAT 399
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 AGTGCTTCTCTTTGTTGCATTTCTTGCTCTCACTGTTCTCACCATTGGTGTTGTGTACAT 355
Query 400 TGGAGTGACTGAGTTTCTTGGGAAGAGGgagagagagaagtttgagaaagacgaggcagc 459
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 356 TGGAGTGACTGAGTTCCTTGGGAAGAGGGAGAGAGAGAAGTTTGAGAAAGATGAAGCAGC 415
Query 460 aaagaagtctaagaaaggtgggaagaagaagGCAATGAGAGCCAGAGCTGGACCAAGAGG 519
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 416 GAAGAAGTCTAAGAAAGGTGGGAAGAAGAAGGCAATGAGAGCCAAAGCTGGACCAAGAGG 475
Query 520 TTTTGGTCAGAAGATTGAAGATGATGACATCGACATTGATCTTGAGTGATTTTGT 574
||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 476 TTTTGGTCAGAAGATTGAAGATGATGATATTGACATTGATCTTGAATGATTTTGT 530
> Ahg933392 jgi|Araly1|933392|scaffold_401380.1
Length=544
Score = 791 bits (428), Expect = 0.0
Identities = 504/539 (94%), Gaps = 12/539 (2%)
Strand=Plus/Plus
Query 39 GTGTGGGAGTGGACGGAAAGATGTCTGCGACAACAACACCATCTCTATCTCTTTCAAATT 98
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTGGGAGTGGAAGGAAAGATGTCTGCGACAACAACACCATCTCTATCTCTTTCAAATT 60
Query 99 TCAGACCAAGATTCCAA-ACTCCAGTTAAAGGC-CACCATATATCTCCACTCTCTTGGTC 156
||| ||||||||||||| | |||||||||| | ||||||||||||||||||||||||||
Sbjct 61 TCACACCAAGATTCCAACA-TCCAGTTAAAA-CACACCATATATCTCCACTCTCTTGGTC 118
Query 157 TGTTTCAAGAAGAAAGATCTTGTCTTTTAGGGTTCTTCGTCTTCACCAAG-AAAAAACCC 215
|||||||||||||||||||||||||| ||| ||||||||| ||||| ||| ||||||| |
Sbjct 119 TGTTTCAAGAAGAAAGATCTTGTCTTCTAGAGTTCTTCGTGTTCAC-AAGGAAAAAACTC 177
Query 216 AACTATGGAGAGTCTCTGCAACTCCGGAAGAAATTTCCCAAGAGATCGTTTCTTCTGATT 275
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 AACTATGGAGAGTCTCTGCAACTCCGGAAGAAATTTCTCAAGAGATCGTTTCTTCTGATT 237
Query 276 CATCTTCTTCTTCTGGAGCAGTTGTGTCTAGTGGTGGACAAGATGGTGTTGCTTTGATTA 335
| | | | ||| | |||| ||||||| |||||||| ||||||||||||||| ||||||
Sbjct 238 C-T-T-CATCT---GAAGCAATTGTGTCAAGTGGTGGTCAAGATGGTGTTGCTCTGATTA 291
Query 336 TACAAGTGCTTCTCTTTGTTGCATTTCTTGCTCTCACGGTTCTCACCATTGGTGTTGTGT 395
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 292 TACAAGTGCTTCTCTTTGTTGCATTTCTTGCTCTCACTGTTCTCACCATTGGTGTTGTGT 351
Query 396 ACATTGGAGTGACTGAGTTTCTTGGGAAGAGGgagagagagaagtttgagaaagacgagg 455
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 352 ACATTGGAGTGACTGAGTTCCTTGGGAAGAGGGAGAGAGAGAAGTTTGAGAAAGATGAAG 411
Query 456 cagcaaagaagtctaagaaaggtgggaagaagaagGCAATGAGAGCCAGAGCTGGACCAA 515
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 412 CAGCGAAGAAGTCTAAGAAAGGTGGGAAGAAGAAGGCAATGAGAGCCAAAGCTGGACCAA 471
Query 516 GAGGTTTTGGTCAGAAGATTGAAGATGATGACATCGACATTGATCTTGAGTGATTTTGT 574
||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 472 GAGGTTTTGGTCAGAAGATTGAAGATGATGATATTGACATTGATCTTGAATGATTTTGT 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25771091892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5