BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29220.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320698 jgi|Araly1|320698|fgenesh1_pm.C_scaffold_4000755 2612 0.0
Ahg952007 jgi|Araly1|952007|scaffold_29500001.1 2383 0.0
Ahg933399 jgi|Araly1|933399|scaffold_401387.1 1864 0.0
> Ahg320698 jgi|Araly1|320698|fgenesh1_pm.C_scaffold_4000755
Length=1887
Score = 2612 bits (1414), Expect = 0.0
Identities = 1742/1899 (92%), Gaps = 27/1899 (1%)
Strand=Plus/Plus
Query 1 ATGATTACCTTCAAATCTATAGCTCTAACGATAATCTTCCTATCATATTTTGTTTCTTGT 60
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGATTACCTCCAAATCTATAGCTCTAACAATAATCTTCCTATCATATTTTGTTTCTTGT 60
Query 61 GTCTCAAGTCAACGAGAGACCAAGTTTCTTAACCATGGCTTCCTCGGGGCTAATCTCCTC 120
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 GTCTCAAGTCAACGAGAAACCAAGTTTCTTAACCATGGCTTTCTCGGAGCTAATCTCCTC 120
Query 121 AACTTCGGCTCCTCCAAGG-TCTACCCAAGTGGCCTCTTGGAGTTGACAAACACTTCGAT 179
||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 121 AACTTAGGCTCTTCCAAGGTTC-ACCCAAGTGGCCTCTTGGAGTTGACAAACACTTCGAT 179
Query 180 GAGGCAGATAGGTCAAGCTTTTCATGGCTTTCCCATCCCCTTGTCAAACCCTAACTCAAC 239
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 180 GAGGCAAATAGGTCAAGCTTTTCATGGCTTTCCCATGCCCTTGTCAAACCCTAACTCCAC 239
Query 240 AAATTCGGTTTCTTTTTCCACAAGCTTCATCTTCGCCATCACTCAAGGAACCGGCGCACC 299
|||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 240 AAATTCTCTTTCTTTCTCCACAAGCTTCGTCTTTGCCATCACTCAAGGAACCGGCGCACC 299
Query 300 AGGCCATGGCCTAGCTTTCGTCATTTCACCCTCGATGGACTTCAGTGGTGCTTTTCCCAG 359
|||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 300 AGGCCACGGCTTAGCTTTCGTCATTTCACCAACGATGGACTTCAGTGGGGCTTTTCCCAG 359
Query 360 CAATTATCTGGGCCTCTTCAACACCTCCAACAATGGAAACTCCTTGAATCGAATTCTTGC 419
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CAATTATCTCGGCCTCTTCAACACCTCCAACAATGGAAACTCCTTGAATCGCATTCTTGC 419
Query 420 AATTGAATTTGACACCGTGCAAGCGGTTGAGTTGAATGATATTGACGATAACCACGTAGG 479
| |||||||||||||||||||||||||||||||||||||||| || ||||| || || ||
Sbjct 420 AGTTGAATTTGACACCGTGCAAGCGGTTGAGTTGAATGATATCGATGATAATCATGTTGG 479
Query 480 CATCGACCTAAATGGAGTGATCTCCATTGCGTCTGCACCGGCTGCATATTTTGATGACCG 539
||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||| ||
Sbjct 480 TATCGATTTAAACGGAGTGGTCTCCATTGAGTCTGCACCGGCTGCATATTTTGATGATCG 539
Query 540 AGAGGCCAAGAACATAAGCTTGAGGCTGGCGAGTGGGAAA-CCAGTAAGAGTCTGGATCG 598
|||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||| |
Sbjct 540 AGAGGCCAAGAACAGAAGCTTGAGGCTGGCGAGTGGGAAACCCA-TTAGAGTCTGGATTG 598
Query 599 AATACAACGCCACTGAGACAATGCTTAATGTCACATTGGCTCCTCTAGATCGTCCGAAGC 658
|||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 AATACAACGCAACTGAGATAATGCTCAATGTCACATTGGCTCCTCTAGATCGTCCGAAGC 658
Query 659 CAAGTATACCTCTTCTCTCGAGAAAAATGAATCTTTCAGGGATTTTCTCCCAAGAACATC 718
|||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||
Sbjct 659 CAAGTATACCTCTTCTCTCGAGAAAACTGAATCTTTCTGGGATTTTATCTCAAGAACATC 718
Query 719 ACGTTGGATTCTCTGCGTCCACGGGGACTGTAGCGAGCTCACATTTTGTTCTAGGTTGGA 778
||||||||||||||||| ||||||| || ||||||||||||||||| |||||||||||||
Sbjct 719 ACGTTGGATTCTCTGCGGCCACGGGAACGGTAGCGAGCTCACATTTGGTTCTAGGTTGGA 778
Query 779 GCTTCAACATCGAAGGGAAAGAATCAGACTTTGATATCACGAAGCTTCCTTCTCTCCCAG 838
|||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 779 GCTTTAACATCGAGGGGAAAGAATCAGACTTCGATATCACGAAGCTTCCTTCACTTCCAG 838
Query 839 ATCCGCCACCAACATTGTCTCCATCCCCAAGTCCTCCGGTTTCAACCGAGAAGAAGTCGA 898
| |||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 839 ACCCGCCACCAACATTGTCTCCATCCCCAAGTCCTCCGGTTTCAGCCAATAAGAAGTCGA 898
Query 899 ACAACACGATGCTGATCATAATCGTCGCTGCATCAGCAACGGTTGCACTCATGATCCTAA 958
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 899 GCAACACGATGCTGATCATAATCGTGGCTGCATCAGCAACGGTTGCAATCATGATCCTAA 958
Query 959 TCTTCTCAGGATTTTGGTTCTTACGTAGAGACAAAATATTCTTCATCGGAGGTGCAAGGA 1018
|||||| || |||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 959 TCTTCTTAGCATTTTGGTTCTTCCGTAGAGACAAAATATTCTTCACCGGAGGTGCAAGGA 1018
Query 1019 AATTCTCCTACCAGACGATATCGAACGCAACGGGAGG---TTTCGACAATTCTAAACTCT 1075
|||| |||||||| || || || | |||||||||||| ||| ||||| ||||||||||
Sbjct 1019 AATTTTCCTACCAAACAATTTCCAGCGCAACGGGAGGAGGTTTTGACAACTCTAAACTCT 1078
Query 1076 TGGGAGAGAGAAACTCTGGAAGTTTCTACAAAGGACAGCTT-GCTCCCACAGAGATAATT 1134
||||||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||
Sbjct 1079 TGGGAGAGAGAAACTCTGGGAGTTTCTACAAAGGGCAGCTTAG-TCCCACAGAGATAATT 1137
Query 1135 GCCGTAAAGAAGA-TTACTTGCACCACAAGGCAACAAAAGACAACCCTAATAGCCGAGAT 1193
|||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1138 GCCGTAAAGA-GAATTACTTGCGCCACAAGGCAACAAAAGACAACCCTAATAACCGAGAT 1196
Query 1194 CGATGCGATCTCCAAGATTAAACAACGAAACCTAGTCAATCTACATGGTTACTGCAGCAA 1253
|||||| || |||||| | |||||| |||| || || |||| |||||||| ||||||||
Sbjct 1197 CGATGCAATTTCCAAGGTAAAACAAAGAAATCTTGTTGATCTGCATGGTTATTGCAGCAA 1256
Query 1254 AGGAAAAGATATCTATCTTGTTTACGAGTATGTCCCCAATGGAAGCCTAGACCGGTTCTT 1313
|||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 AGGAAACGAGATCTATCTAGTTTACGAGTATGTCCCCAACGGAAGCCTAGACCGGTTCTT 1316
Query 1314 GTTCAACAACGACCGACCAGTTCTCACCTGGTCAGATCGGTTCTGTATAATAAAGGGGAT 1373
||||| ||||||||| || ||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1317 GTTCAGCAACGACCGCCCTGTTCTCACCTGGTCAGACCGGTTCTGTATCATAAAGGGCAT 1376
Query 1374 TGCAG-CAGCACTTCAACACCTTCACGGTGAAGGTCAAAAACCT-TTGATTCATGGAAAC 1431
||| | ||||||||||||||||||||||||| || ||||||||| || ||||| ||||||
Sbjct 1377 TGC-GTCAGCACTTCAACACCTTCACGGTGAGGGACAAAAACCTCTT-ATTCACGGAAAC 1434
Query 1432 GTAAAAGCAAGCAACGTACTCTTAGACGAAGAGCTAAACGCTCGACTAGGCGACTATGGA 1491
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1435 GTCAAAGCCAGCAACGTACTCTTAGACGAAGAGCTAAACGCTCGACTAGGAGACTATGGG 1494
Query 1492 CAAGGAAGCAGACACAGCACCACAGGG-CACGTTGCACCAGAACTAGTCAACACGGGAAA 1550
|| |||||||||||||||||||| ||| || || ||||||||||||||||||||||||||
Sbjct 1495 CATGGAAGCAGACACAGCACCAC-GGGACATGTGGCACCAGAACTAGTCAACACGGGAAA 1553
Query 1551 GG-TAACACGTGACACAGATGTGTTTGCGTTTGGAGTGTTGATGATGGAGATCGTTTGTG 1609
|| || |||||||||||||||| |||| |||||||||||| ||||||||||| |||||||
Sbjct 1554 GGCTA-CACGTGACACAGATGTTTTTGAGTTTGGAGTGTTAATGATGGAGATTGTTTGTG 1612
Query 1610 GAAGGAAGGCCATAGAGCCGACTAAAGC-ACCAGAAGAGATAAGTTTGGTGAACTGGGTG 1668
|||| || || ||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 1613 GAAGAAAAGCTATAGAGCCGAC-AAAGCCACCAGCAGAGATAAGTTTGGTGAACTGGGTG 1671
Query 1669 CTTCAAGGGTTCAAGAAAGGTGA-TCTGTTA-ATGAGCTGCGACACAAGAATCAATAGAG 1726
||||||| |||||||||||| || | ||||| | || ||||||||||||| |||||||||
Sbjct 1672 CTTCAAGAGTTCAAGAAAGG-GAATTTGTTACA-GATCTGCGACACAAGAGTCAATAGAG 1729
Query 1727 AGAATTTGGTAGCTCGAGAAGTATTATTGGTTCTGAAAACAGGACTTCTCTGCGCCAACC 1786
|||||||||||||||||||||| || |||||||| ||||| |||||||||||||| ||||
Sbjct 1730 AGAATTTGGTAGCTCGAGAAGTGTTGTTGGTTCTCAAAACTGGACTTCTCTGCGCGAACC 1789
Query 1787 GATCTCCAGAATCAAGGCCAATGATGAAA-AATGTGTTTCGGTATCTCGAAGGAACTGAA 1845
|||||||||||||||||||||||||||| || |||||||||| |||||| ||||| |||
Sbjct 1790 GATCTCCAGAATCAAGGCCAATGATGAAGCAA-GTGTTTCGGTTTCTCGATGGAACAGAA 1848
Query 1846 GCTCTCCCTCATGATGACTACCTCTTCTATGGAGTCTAA 1884
||||||||||||||||||||||||||||||||||||||
Sbjct 1849 CCTCTCCCTCATGATGACTACCTCTTCTATGGAGTCTAA 1887
> Ahg952007 jgi|Araly1|952007|scaffold_29500001.1
Length=1930
Score = 2383 bits (1290), Expect = 0.0
Identities = 1706/1904 (90%), Gaps = 40/1904 (2%)
Strand=Plus/Plus
Query 1 ATGATTACCTTCAAATCTATAGCTCTAACGATAATCTTCCTATCATATTTTGTTTCTTGT 60
|||||||||| ||||||||||||||||| ||||||||| ||| |||| | |||||||||
Sbjct 25 ATGATTACCTCCAAATCTATAGCTCTAATAATAATCTTCTTATTATATCTAGTTTCTTGT 84
Query 61 GTCTCAAGTCAACGAGAGACCAAGTTTCTTAACCATGGCTTCCTCGGGGCTAATCTCCTC 120
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 85 GTTTCAAGTCAACGAGAAATTAAGTTTCTTAACCATGGCTTCCTCGGGGCTAATCTCCTC 144
Query 121 AACTTCGGCTCCTCCAAGG-TCTACCCAAGTGGCCTCTTGGAGTTGACAAACACTTCGAT 179
|| |||||||||||||||| || ||||||||||||||||||| ||||| |||||||| ||
Sbjct 145 AAGTTCGGCTCCTCCAAGGTTC-ACCCAAGTGGCCTCTTGGAATTGACGAACACTTCCAT 203
Query 180 GAGGCAGATAGGTCAAGCTTTTCATGGCTTTCCCATCCCCTTGTCAAACCCTAACTCAAC 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 204 GAGGCAGATAGGTCAAGCTTTTCATGGCTTTCCCATACCCTTGTCAAACCCTAACTCCAC 263
Query 240 AAATTCGGTTTCTTTTTCCACAAGCTTCATCTTCGCCATCACTCAAGGAACCGGCGCACC 299
|||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 264 AAATTCTGTTTCTTTCTCCACAAGCTTCGTCTTCGCCATCACTCAAGGACCCGGCGCACC 323
Query 300 AGGCCATGGCCTAGCTTTCGTCATTTCACCCTCGATGGACTTCAGTGGTGCTTTTCCCAG 359
|||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 324 AGGCCACGGCTTAGCTTTCGTCATTTCACCCTCGATGGACTTCAGTGGGGCTTTTCCCAG 383
Query 360 CAATTATCTGGGCCTCTTCAACACCTCCAACAATGGAAACTCCTTGAATCGAATTCTTGC 419
||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 384 CAATTATCTCGGCCTCTTCAACACCTCCAACAATGGAATCTCCTTGAATCGCATTCTTGC 443
Query 420 AATTGAATTTGACACCGTGCAAGCGGTTGAGTTGAATGATATTGACGATAACCACGTAGG 479
| ||||||||||||||||||| || |||||||| || |||||||| ||||| || || ||
Sbjct 444 AGTTGAATTTGACACCGTGCAGGCCGTTGAGTTAAACGATATTGATGATAATCATGTTGG 503
Query 480 CATCGACCTAAATGGAGTGATCTCCATTGCGTCTGCACCGGCTGCATATTTTGATGACCG 539
||||| ||||| ||||||| |||||||| ||| ||||| || |||||||||||||||||
Sbjct 504 TATCGATCTAAACGGAGTGACCTCCATTGAGTCCGCACCAGCGGCATATTTTGATGACCG 563
Query 540 AGAGGCCAAGAACATAAGCTTGAGGCTGGCGAGTGGGAAACCAGTAAGAGTCTGGATCGA 599
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||
Sbjct 564 AGAGGCCAAGAACATAAGCTTGAGGCTGGCGAGTGGGAAACGAATTAGAGTCTGGATTGA 623
Query 600 ATACAACGCCACTGAGACAATGCTTAATGTCACATTGGCTCCTCTAGATCGTCC-GAAGC 658
||||||||| ||||||| ||||| |||||||| |||||||||||||||| ||| |||||
Sbjct 624 ATACAACGCAACTGAGATGATGCTCAATGTCACGTTGGCTCCTCTAGATC-TCCCGAAGC 682
Query 659 CAAGTATACCTCTTCTCTCGAGAAAAATGAATCTTTCAGGGATTTTCTCCCAAGAACATC 718
|||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 683 CAAGTATACCTCTTCTCTCGAGAAAACTGAATCTTTCTGGGATTTTATCCCAAGAACATC 742
Query 719 ACGTTGGATTCTCTGCGTCCACGGGGACTGTAGCGAGCTCACATTTTGTTCTAGGTTGGA 778
| ||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 743 ATGTTGGATTCTCTGCGGCCACGGGAACTGTAGCTAGCTCACATTTGGTTCTAGGTTGGA 802
Query 779 GCTTCAACATCGAAGGGAAAGAATCAGACTTTGATATCACGAAGCTTCCTTCTCTCCCAG 838
|||| |||||||| || | || |||||| |||||||||||||||||||||||||| ||||
Sbjct 803 GCTTTAACATCGATGGCACAGCATCAGAATTTGATATCACGAAGCTTCCTTCTCTTCCAG 862
Query 839 ATCC-GCCACCAAC-ATTGTCTCCATCCCCAAGTCCTCCGGTTTCAACCGAGAAGAAG-T 895
||| ||| || | ||||||||| ||||||||||||||||||||| | | || ||| |
Sbjct 863 -TCCCGCCGCCT-CTATTGTCTCCGTCCCCAAGTCCTCCGGTTTCAGTCAA-AA-AAGAT 918
Query 896 -CGAACAACACGATGCTGATCATAATC-GTCGCTGCATCAGCAACGGTTGCACTCATGAT 953
||||||||| || |||||| || ||| | |||| |||||| |||| ||| | || ||||
Sbjct 919 TCGAACAACATGAAGCTGATTATTATCTG-CGCTACATCAGGAACGTTTGTAATCGTGAT 977
Query 954 CCTAAT-CTTCTCAGGATTTTGGTTCTTACGTAGAGA-CAAAATATTCTTCATC-GGAGG 1010
| | || || || ||| |||||| | || |||||| | |||| |||||| | | |||||
Sbjct 978 CTTGATTCT-CTTAGGGTTTTGGGTATTCCGTAGAAAGCAAAC-ATTCTTTA-CAGGAGG 1034
Query 1011 TGCAAGGAAATTCTCCTACCAGACGATATCGAACGCAACGGGAGGTTTCGACAATTCTAA 1070
|||||||||||||||| |||||| ||||||| |||||| |||||||| ||||| |||||
Sbjct 1035 TGCAAGGAAATTCTCCCACCAGAAAATATCGAGCGCAACAGGAGGTTTTGACAACTCTAA 1094
Query 1071 ACTCTTGGGAGAGAGAAACTCTGGAAGTTTCTACAAAGGACAGCTT-GCTCCCACAGAGA 1129
|||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||
Sbjct 1095 ACTCTTGGGAGAGAGAAACTCTGGGAGTTTCTACAAAGGGCAGCTTAG-TCCCACAGAGA 1153
Query 1130 TAATTGCCGTAAAGAAGA-TTACTTGCACCACAAGGCAACAAAAGACAACCCTAATAGCC 1188
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1154 TAATTGCCGTAAAGA-GAATTACTTGCGCCACAAGGCAACAAAAGACAACCCTAATAACC 1212
Query 1189 GAGATCGATGCGATCTCCAAGATTAAACAACGAAACCTAGTCAATCTACATGGTTACTGC 1248
||||||||||| || |||||| | |||||| |||| || || |||| |||||||| |||
Sbjct 1213 GAGATCGATGCAATTTCCAAGGTAAAACAAAGAAATCTTGTTGATCTGCATGGTTATTGC 1272
Query 1249 AGCAAAGGAAAAGATATCTATCTTGTTTACGAGTATGTCCCCAATGGAAGCCTAGACCGG 1308
||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1273 AGCAAAGGAAACGAGATCTATCTAGTTTACGAGTATGTCCCCAACGGAAGCCTAGACCGG 1332
Query 1309 TTCTTGTTCAACAACGACCGACCAGTTCTCACCTGGTCAGATCGGTTCTGTATAATAAAG 1368
|||||||||| ||||||||| || ||||||||||||||||| ||||||||||| ||||||
Sbjct 1333 TTCTTGTTCAGCAACGACCGCCCTGTTCTCACCTGGTCAGACCGGTTCTGTATCATAAAG 1392
Query 1369 GGGATTGCAG-CAGCACTTCAACACCTTCACGGTGAAGGTCAAAAACCT-TTGATTCATG 1426
|| ||||| | ||||||||||||||||||||||||| || ||||||||| || ||||| |
Sbjct 1393 GGCATTGC-GTCAGCACTTCAACACCTTCACGGTGAGGGACAAAAACCTCTT-ATTCACG 1450
Query 1427 GAAACGTAAAAGCAAGCAACGTACTCTTAGACGAAGAGCTAAACGCTCGACTAGGCGACT 1486
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1451 GAAACGTCAAAGCCAGCAACGTACTCTTAGACGAAGAGCTAAACGCTCGACTAGGAGACT 1510
Query 1487 ATGGACAAGGAAGCAGACACAGCACCACAGGG-CACGTTGCACCAGAACTAGTCAACACG 1545
|||| || |||||||||||||||||||| ||| || || |||||||||||||||||||||
Sbjct 1511 ATGGGCATGGAAGCAGACACAGCACCAC-GGGACATGTGGCACCAGAACTAGTCAACACG 1569
Query 1546 GGAAAGG-TAACACGTGACACAGATGTGTTTGCGTTTGGAGTGTTGATGATGGAGATCGT 1604
||||||| || |||||||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct 1570 GGAAAGGCTA-CACGTGACACAGATGTTTTTGAGTTTGGAGTGTTAATGATGGAGATTGT 1628
Query 1605 TTGTGGAAGGAAGGCCATAGAGCCGACTAAAGC-ACCAGAAGAGATAAGTTTGGTGAACT 1663
||||||||| || || ||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1629 TTGTGGAAGAAAAGCTATAGAGCCGAC-AAAGCCACCAGCAGAGATAAGTTTGGTGAACT 1687
Query 1664 GGGTGCTTCAAGGGTTCAAGAAAGGTGA-TCTGTTA-ATGAGCTGCGACACAAGAATCAA 1721
|||||||||||| |||||||||||| || | ||||| | || ||||||||||||| ||||
Sbjct 1688 GGGTGCTTCAAGAGTTCAAGAAAGG-GAATTTGTTACA-GATCTGCGACACAAGAGTCAA 1745
Query 1722 TAGAGAGAATTTGGTAGCTCGAGAAGTATTATTGGTTCTGAAAACAGGACTTCTCTGCGC 1781
||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 1746 TAGAGAGAATTTGGTAGCTCGAGAAGTGTTGTTGGTTCTCAAAACTGGACTTCTCTGCGC 1805
Query 1782 CAACCGATCTCCAGAATCAAGGCCAATGATGAAA-AATGTGTTTCGGTATCTCGAAGGAA 1840
|||||||||||||||||||||||||||||||| || |||||||||| |||||| ||||
Sbjct 1806 GAACCGATCTCCAGAATCAAGGCCAATGATGAAGCAA-GTGTTTCGGTTTCTCGATGGAA 1864
Query 1841 CTGAAGCTCTCCCTCATGATGACTACCTCTTCTATGGAGTCTAA 1884
| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1865 CAGAACCTCTCCCTCATGATGACTACCTCTTCTATGGAGTCTAA 1908
> Ahg933399 jgi|Araly1|933399|scaffold_401387.1
Length=1915
Score = 1864 bits (1009), Expect = 0.0
Identities = 1618/1904 (85%), Gaps = 73/1904 (4%)
Strand=Plus/Plus
Query 6 TACCTTC-AAATCTATAGCTCTAACGATAATCTTCCTATCATATTTTGTTTCTTGTGTCT 64
|||| || ||||| ||||||||| | ||||||||||||| || | ||||||||||||
Sbjct 29 TACC-TCTAAATCGATAGCTCTATCAATAATCTTCCTATTATCCTCAATTTCTTGTGTCT 87
Query 65 CAAGTCAACGA-GAGACCAAGTTTCTTAACCATGGCTTCCTCGGGGCTAATCTCCTCAAC 123
|||||||| | || | ||| ||||||||||||||||| ||||| |||||||||||| ||
Sbjct 88 TAAGTCAAC-AGGAAAACAAATTTCTTAACCATGGCTTTCTCGGAGCTAATCTCCTC-AC 145
Query 124 -TTCGGCTCCTCCAAGGTCTACCCA-AGTGGCCTCTTGGAGTTGACAAACACTTCGATGA 181
|| |||||||| ||| || | ||| ||||||||||||||||||||||| ||||| ||||
Sbjct 146 TTTTGGCTCCTCAAAGATCCA-CCAGAGTGGCCTCTTGGAGTTGACAAATACTTCAATGA 204
Query 182 GGCAGATAGGTCAAGCTTTTCATGGCTTTCCCATCCCCTTGTCAAACCCTAACTCAACAA 241
|||| ||||||||||||||||||||||||||||| ||||| | ||||||||||| |||
Sbjct 205 GGCAAATAGGTCAAGCTTTTCATGGCTTTCCCATACCCTTCTTGAACCCTAACTCCTCAA 264
Query 242 ATTCGGTTTCTTTTTCCACAAGCTTCATCTTCGCCATCACTCAAGGAACC-GGCGCACCA 300
|||| |||||||| ||||||||||| ||||||||||||||| ||| ||| | |||||
Sbjct 265 ATTCTGTTTCTTTCTCCACAAGCTTTGTCTTCGCCATCACTCCAGG-ACCAACCACACCA 323
Query 301 GGCCATGGCCT-AGCTTTCGTCATTTCACCCTCGATGGACTTCAGTGGTGCTTTTCCCAG 359
||||| ||| | |||||| || || || || ||||||||||| || || || ||||||||
Sbjct 324 GGCCACGGCTTGAGCTTT-GTTATCTCTCCGTCGATGGACTTTAGCGGAGCCTTTCCCAG 382
Query 360 CAATTATCTGGGCCTCTTCAACACCTCCAACAATGGAAACTCCTTGAATCGAATTCTTGC 419
|||||| || ||||| |||||||| |||| |||||||||||||| || || ||||||||
Sbjct 383 CAATTACCTTGGCCTTTTCAACACATCCACCAATGGAAACTCCTCAAACCGCATTCTTGC 442
Query 420 AATTGAATTTGACACCGTGCAAG-CGGTTGAGTTGAATGATATTGACGATAACCACGTAG 478
| |||| || ||||| || | || | ||||| |||| |||||||| |||||||| || |
Sbjct 443 AGTTGAGTTCGACACGGTTC-AGTCCGTTGAAATGAACGATATTGATGATAACCATGTTG 501
Query 479 GCATCGACCTAAATGGAGTGATCTCCATTGCGTCTG-CACCGGCTGCATATTTTGATGAC 537
| |||||| ||||||||||||||||||||| |||| | || ||||||||||||||||||
Sbjct 502 GTATCGACGTAAATGGAGTGATCTCCATTGAATCTGCCTCC-GCTGCATATTTTGATGAC 560
Query 538 CGAGAGGCCAAGAACATAAGCTTGAGGCTGGCGAGTGGGAAACC-AGTAAGAGTCTGGAT 596
|||||||| |||||||| || |||||| |||||||||||||||| | | |||||||||||
Sbjct 561 CGAGAGGCAAAGAACATTAGTTTGAGGTTGGCGAGTGGGAAACCTA-TTAGAGTCTGGAT 619
Query 597 CGAATACAACGCCACTGAGACAATGCTTAATGTCACATTGGCTCCTCTAGATCGTCCGAA 656
||||||||| || || |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 620 CGAATACAATGCGACCGAGATGATGCTCAATGTCACATTGGCTCCTCTAGATCGTCCGAA 679
Query 657 GCC-AAGTATACCTCTTCTCTCGAGAAAAATGAATCTTTCAGGGATTTTCTCCCAAGAAC 715
||| || | | |||||||| ||||||||| | ||||| || | |||| |||| ||||||
Sbjct 680 GCCAAACT-TGCCTCTTCTATCGAGAAAACTAAATCTCTCTGAGATTGTCTCTGAAGAAC 738
Query 716 ATCACGTTGGATTCTCTGC-GTCCACGGGGACTGT-AGCGAGCTCACATTTTGTTCTAGG 773
|| |||||||||||||| | ||||||| ||||| | |||||||||||||||| |||||
Sbjct 739 ATTTTGTTGGATTCTCTGCAG-CCACGGGAACTGTCA-CGAGCTCACATTTTGTGCTAGG 796
Query 774 TTGGAGCTTCAACATCGAAGGGAAAGAATCAGACTTTGATATCACGAAGCTTCCTTCTCT 833
|||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||
Sbjct 797 CTGGAGCTTCAGCATCGAGGGGAAAGCATCAGACTTTGATATTACGAAGCTTCCCTCTCT 856
Query 834 CCCAGAT-CCGCCACCAACATTGTCTCCATCCCCAAGTCCTCCGGTTTCAACCGAGAAGA 892
|||| | || || || |||||||||| |||||||||||||||||||| | ||||||
Sbjct 857 TCCAG-TCCCACCGCCTCCATTGTCTCCGTCCCCAAGTCCTCCGGTTTCGGTCAAGAAGA 915
Query 893 AGTCGAACAACACGATGCTGATCATAATCGTCGCTGCATCAGCAACGGTTGCACTCATGA 952
|||||| ||||| || ||||||||||||| | ||| || ||||||| ||| | || ||
Sbjct 916 AGTCGAGCAACATGAAGCTGATCATAATCATTGCTACAGCAGCAACATTTGTAATCTTGT 975
Query 953 TCCTAATCTTCTCAGGATTTTG-GTTCTTACGTAG-AGACAAAATATTCTTCATCGGAGG 1010
|| | ||||||| || | |||| ||| || ||||| || ||| | ||||| ||||||
Sbjct 976 TCTTGATCTTCTTAGCAGTTTGTGTT-TTTCGTAGAAG-GGAAA-A--CTTCACCGGAGG 1030
Query 1011 TGCAAGGAAATTCTC-CTACCAGACGATATCGAACGCAACGGGAGGTTTCGACAATTCTA 1069
||| |||||||||| | |||||||||| || | ||||||||||||||||||||| ||||
Sbjct 1031 CGCACGGAAATTCTCAC-ACCAGACGATTTCCAGCGCAACGGGAGGTTTCGACAACTCTA 1089
Query 1070 AACTCTTGGGAGAGAGAAACTCTGGAAGTTTCTACAAAGGACAGCTTGCTCCCACAGAGA 1129
| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1090 AGCTTTTGGGAGAGAGAAACTCTGGCAGTTTCTACAAAGGGCAACTTGCTCCCACAGAGA 1149
Query 1130 TAATTGCCGTAAAGAAG-ATTACTTGCACCACAAGGCAACAAAAGACAACCCTAATAGCC 1188
|||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1150 TAATTGCCGTAAAG-AGAATTACTTGCAGCACAAGGCAGCAAAAGACAACCCTAATAGCT 1208
Query 1189 GAGATCGATGCGATCTCCAAGATTAAACAACGAAACCTAGTCAATCTACATGGTTACTGC 1248
|| |||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||
Sbjct 1209 GAAATCGATGCGATCTCCAAGATAAAACAAAGAAACCTTGTTAATCTACATGGTTACTGC 1268
Query 1249 AGCAAAGGAAAAGATATCTATCTTGTTTACGAGTATGTCCCCAATGGAAGCCTAGACCGG 1308
|| |||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct 1269 AGAAAAGGAAACGAGATCTATCTAGTTTACGAATATGTCCCCAACGGAAGCCTGGACCGG 1328
Query 1309 TTCTTGTTCAACAACGACCGACCAGTTCTCACCTGG-TCAGATC-GGTT-CTGTATAATA 1365
|||||||||||||||||||||||||||||||| ||| | ||| | |||| | |||| |||
Sbjct 1329 TTCTTGTTCAACAACGACCGACCAGTTCTCACATGGGT-AGA-CAGGTTTC-GTATTATA 1385
Query 1366 AAGGGGATTGCAG-CAGCACTTCAACACCTTCACGGTGAAGGT-CAAAAACCT-TTGATT 1422
||||| ||||| | ||||||||||||||||||||||||| ||| ||||||||| || ||
Sbjct 1386 AAGGGTATTGC-GTCAGCACTTCAACACCTTCACGGTGA-GGTTCAAAAACCTCTT-ATA 1442
Query 1423 CATGGAAACGTAAAAGCAAGCAACGTACTCTTAGACGAAGAGCTAAACGCTCGACTAGGC 1482
|||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1443 CATGGAAATGTCAAAGCAAGTAACGTACTCTTGGACGAAGAGCTAAACGCTCGACTAGGA 1502
Query 1483 GACTATGGACAAGGAAGCAGACACAGCACCACAGGG-CACGTTGCACCAGAACTAGTCAA 1541
||||||||||||||||||||||||||||| || ||| || || |||||||||||||||||
Sbjct 1503 GACTATGGACAAGGAAGCAGACACAGCACTAC-GGGACATGTGGCACCAGAACTAGTCAA 1561
Query 1542 CACGGGAAAGG-TAACACGTGACACAGATGTGTTTGCGTTTGGAGTGTTGAT-GATGGAG 1599
||||||||||| || ||| ||| ||||||||||||| |||||||||||| || |||||||
Sbjct 1562 CACGGGAAAGGCTA-CACTTGAAACAGATGTGTTTGAGTTTGGAGTGTT-ATTGATGGAG 1619
Query 1600 ATCGTTTGTGGAAGGA-AGGCCATAGAGCCGACTAAAGCA-CCAGAAGAGATAAGTTTGG 1657
|| ||||||||||||| || ||||||||||||| |||| | || | |||||| ||||| |
Sbjct 1620 ATTGTTTGTGGAAGGAGAG-CCATAGAGCCGAC-AAAGGAACCGGTAGAGATCAGTTTAG 1677
Query 1658 TGAACTGGGTGCTTCAAGGGTTCAAGAAAGGTGATCTGTTAATGAGCTGCGACACAAGAA 1717
| |||||| |||||| |||| |||||| || |||| |||| ||| ||||||| |||||
Sbjct 1678 TTAACTGGATGCTTCGAGGGGTCAAGAGCGGCAATCTCTTAAGGAGATGCGACAAAAGAA 1737
Query 1718 TCAATAGAGAGAATTTGGTAGCTCG-AG-AAGTATTATTGGTTCTGAAAACAGGACTTCT 1775
|||| | | || ||||||| | ||| || |||| | ||||||| ||||||||||||||||
Sbjct 1738 TCAAGAAAAAGGATTTGGT-G-TCGGAGGAAGTGTCATTGGTTTTGAAAACAGGACTTCT 1795
Query 1776 CTGCGCCA-ACCGATCTCCAGAATCAAGGCCAATGATGAA-AAATGTGTTTCG-GTATCT 1832
||||| | || ||||||||||| | |||||||||||||| ||| ||||| | ||||||
Sbjct 1796 CTGCGTGAGAC-GATCTCCAGAAGCTAGGCCAATGATGAAGAAA-GTGTTG-GAGTATCT 1852
Query 1833 CGAA-GGAACTGAA-GCTCTCCCTCATGATGACTACCTCTTCTA 1874
| || || || ||| | |||||||||||| |||||| || ||||
Sbjct 1853 C-AATGGTACAGAAAG-TCTCCCTCATGACGACTACGTCGTCTA 1894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5