BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29260.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933400 jgi|Araly1|933400|scaffold_401388.1 1101 0.0
Ahg887777 jgi|Araly1|887777|Al_scaffold_0084_1 643 0.0
> Ahg933400 jgi|Araly1|933400|scaffold_401388.1
Length=902
Score = 1101 bits (596), Expect = 0.0
Identities = 726/788 (92%), Gaps = 12/788 (2%)
Strand=Plus/Plus
Query 6 TGGTGCTTGACATGGCTTCTCACTTGTACACAAATCCACCTCAAAACCTTCAC--T-TT- 61
|||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 26 TGGTGCTTGACATGGCTTCTCACTTGTACATAAATCCACCTCAAAACCTTCACTTTCTTC 85
Query 62 -AT-TTCTTCTTCTTCTTCCCTTAAACCTCATTTATGCCTCTCTTTCAAACGCATAAACC 119
| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 86 CTTCTTCTTCTTCTTCTTCCCTTAAACCTCACTTATACCTCTCTTTCAAACGCATAAACC 145
Query 120 CTA-AACACAAATCCTCTTCCTCTTCCGTCTTCGTCCCTTACGCATCACAGAGTTCCATT 178
| | ||| ||||||||| ||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 146 C-ACAACCCAAATCCTCATCCTCCTCCGTCTTCGTCCCTTGCGCATCACAGAGCTCCATT 204
Query 179 GCCATTACCTCCAAGGAAAGATGGTCTCTCAATGGAATGTCTGCTCTTGTCACCGGCGGC 238
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 205 GCCATTACTTCCAACGAAAGATGGTCTCTCAATGGATTGTCTGCTCTTGTCACCGGCGGC 264
Query 239 ACTCGTGGAATTGGGCGTGCGATTGTGGAGGAATTGGCTGGTCTTGGAGCAGAA-GTTCA 297
||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 265 ACTCGCGGAATCGGGCGTGCGATTGTGGAGGAATTGGCTGGTCTTGGAGCA-AAGGTTCA 323
Query 298 CACTTGCGCTCGGAATGAGTACGAGCTGGAGAATTGTTTGAGTGATTGGAACCGTTCTGG 357
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 324 CACTTGCGCTCGAAATGAGAACGAGCTGGAGAATTGTTTGAGTGATTGGAACCGTTATGG 383
Query 358 TTTTC-GAGTTGCTGGATCCGTTTGCGATGTCTCTGATCGATCTCAGAGAGAGGCTTTGA 416
| || ||||||| |||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 384 -TCTCAGAGTTGCGGGATCCGTCTGCGATGTCTCTGATCAATCTCAGAGAGAGGATTTGA 442
Query 417 TGGAGACCGTGTCATCTGTGTTTGAAGGGAAGCTTCATATCCTTGTAAACAATGTTGGGA 476
||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 443 TGGAGACTGTATCATCTGTCTTTGACGGGAAGCTTCATATCCTTGTAAACAATGTTGGGA 502
Query 477 CGAACATTAGGAAACCAATGGTAGAGTTTACTGCTGGAGAATTTTCGACTCTGATGTCTA 536
||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 503 CGAACATCAGGAAACCAATGGTAGAGTTTACGGCTGGAGAATTTTCGACTCTCATGTCGA 562
Query 537 CGAATTTCGAATCGGTTTTCCATTTATGTCAACTTGCTTATCCATTGCTTAGAGAATCTA 596
||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||
Sbjct 563 CGAATTTCGAATCGGTTTTCCATTTATGTCAGCTTGCTTATCCGTTACTTAGAGCATCTG 622
Query 597 AAGCTGGAAGTGTTGTGTTCATCTCTTCTGTTTCTGGTTTTGTTTCCCTCAAGAATATGT 656
| ||||| |||||||| | |||||||||||||||||||||||| || |||||||||||||
Sbjct 623 AGGCTGGCAGTGTTGTATCCATCTCTTCTGTTTCTGGTTTTGTCTCACTCAAGAATATGT 682
Query 657 CGGTCCAATCTTCAACCAAAGGAGCAATTAATCAACTTACGAGAAGTCTGGCTTGCGAGT 716
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CGGTTCAATCTGCAACCAAAGGAGCAATTAATCAACTTACGAGAAGTCTGGCTTGCGAGT 742
Query 717 GGGCCAAAGACAATATAAGGATCAATGCTGTTGCCCCGTGGTATATCAAAACATCTATGG 776
|||| || |||||||||||| ||||||||||||| || ||||||||||||||||| ||||
Sbjct 743 GGGCTAAGGACAATATAAGGGTCAATGCTGTTGCACCATGGTATATCAAAACATCGATGG 802
Query 777 TGGAGCAA 784
| ||||||
Sbjct 803 TAGAGCAA 810
> Ahg887777 jgi|Araly1|887777|Al_scaffold_0084_1
Length=609
Score = 643 bits (348), Expect = 0.0
Identities = 430/468 (92%), Gaps = 12/468 (3%)
Strand=Plus/Plus
Query 6 TGGTGCTTGACATGGCTTCTCACTTGTACACAAATCCACCTCAAAACCTTCAC--T-TT- 61
|||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 5 TGGTGCTTGACATGGCTTCTCACTTGTACATAAATCCACCTCAAAACCTTCACTTTCTTC 64
Query 62 -AT-TTCTTCTTCTTCTTCCCTTAAACCTCATTTATGCCTCTCTTTCAAACGCATAAACC 119
| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 65 CTTCTTCTTCTTCTTCTTCCCTTAAACCTCACTTATACCTCTCTTTCAAACGCATAAACC 124
Query 120 CTA-AACACAAATCCTCTTCCTCTTCCGTCTTCGTCCCTTACGCATCACAGAGTTCCATT 178
| | ||| ||||||||| ||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 125 C-ACAACCCAAATCCTCATCCTCCTCCGTCTTCGTCCCTTGCGCATCACAGAGCTCCATT 183
Query 179 GCCATTACCTCCAAGGAAAGATGGTCTCTCAATGGAATGTCTGCTCTTGTCACCGGCGGC 238
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 184 GCCATTACTTCCAACGAAAGATGGTCTCTCAATGGATTGTCTGCTCTTGTCACCGGCGGC 243
Query 239 ACTCGTGGAATTGGGCGTGCGATTGTGGAGGAATTGGCTGGTCTTGGAGCAGAA-GTTCA 297
||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 244 ACTCGCGGAATCGGGCGTGCGATTGTGGAGGAATTGGCTGGTCTTGGAGCA-AAGGTTCA 302
Query 298 CACTTGCGCTCGGAATGAGTACGAGCTGGAGAATTGTTTGAGTGATTGGAACCGTTCTGG 357
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 303 CACTTGCGCTCGAAATGAGAACGAGCTGGAGAATTGTTTGAGTGATTGGAACCGTTATGG 362
Query 358 TTTTC-GAGTTGCTGGATCCGTTTGCGATGTCTCTGATCGATCTCAGAGAGAGGCTTTGA 416
| | | ||||||| |||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 363 TCT-CAGAGTTGCGGGATCCGTCTGCGATGTCTCTGATCAATCTCAGAGAGAGGATTTGA 421
Query 417 TGGAGACCGTGTCATCTGTGTTTGAAGGGAAGCTTCATATCCTTGTAA 464
||||||| || |||||||| ||||| ||||||||||||||||||||||
Sbjct 422 TGGAGACTGTATCATCTGTCTTTGACGGGAAGCTTCATATCCTTGTAA 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5