BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29290.2
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2 1371 0.0
Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1 950 0.0
Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1 730 0.0
Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1 704 0.0
Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1 664 0.0
Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1 182 8e-45
> Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2
Length=1329
Score = 1371 bits (742), Expect = 0.0
Identities = 880/947 (93%), Gaps = 7/947 (1%)
Strand=Plus/Plus
Query 440 TATTTCCACCACACATACAAAGATAATCACT-AGATTCATACTTATCCGTTCCACATTCA 498
||||||||||||||||||||| | | ||| | || |||| ||||||| | |||||| |||
Sbjct 386 TATTTCCACCACACATACAAATACACTCATTAAG-TTCACACTTATCTGATCCACAATCA 444
Query 499 -TTGTATATACAAAATCTGTGGCATTTCTGGTCACTTCAAGTAAGATACAAGAAAAAATG 557
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 445 TTTGTATATACAACATCTGTGGCATTTCTGGTCACTTCAAGTAAGATACAAG-AAAAATG 503
Query 558 GATAAAAGATGGAGTCTTCAAGGTATGAATGCTCTTGTGACCGGTGGCACTAAAGGCATC 617
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 504 GATAAAAGATGGAGTCTTCAAGGTATGACTGCTCTTGTGACCGGTGGCACTAAAGGAATC 563
Query 618 GGGGAAGCTGTTGTGGAGGAACTGTCAATTTTGGGAGCAAGAGTCCACACATGTGCTAGA 677
||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct 564 GGGGAAGCTGTGGTGGAGGAACTATCAATCTTGGGAGCAATAGTCCACACATGTGCCAGA 623
Query 678 GACGAGACTCAGCTTCAAGAACGTTTACGTGAATGGCAAGAAAAAGGGTTTCAGGTCACC 737
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 624 GACGAGACTCAGCTTCAAGAACGTTTGCTTGAATGGCAAGAAAAAGGGTTTCAGGTCACC 683
Query 738 ACTTCTATCTGCGACGTTTCTTTGCGTGAGCAACGAGAGAAACTCATGGAAACCGTTTCC 797
|||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 684 ACTTCTGTCTGCGACGTTTCTCTGCGTGACCAACGAGAGAAACTCATCGAAACCGTTTCC 743
Query 798 TCTCTCTTCCAAGGAAAACTCAACATCCTCGTGAACAATGTGGGAACGTTAATGCTCAAG 857
||||||||||||||||||||||| |||||||| ||||||| |||||||| || || |||
Sbjct 744 TCTCTCTTCCAAGGAAAACTCAATATCCTCGTAAACAATGCAGGAACGTTTATACTTAAG 803
Query 858 CCGACCACAGAGTATACAGCAGAAGAATTCTCGTTTCTTATGGCTACAAATCTCGACTCA 917
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 804 CCGACCACAGAGTATACAGCAGAAGAATTCTCGTTTATAATGGCTACAAATCTCGAGTCA 863
Query 918 GCTTTCCATATTTCACAGCTTGCGCACCCTTTGTTGAAAGCCTCTGGCTCAGGGAGCATT 977
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 864 GCTTTCCATATTTCACAGCTAGCGCACCCTTTGTTGAAAGCCTCTGGCTCAGGGAGCATT 923
Query 978 GTGCTCATGTCCTCTATTGCCGGAGTCGTGCATGTCGGTGTTGGATCCATCTATGGAGCA 1037
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 924 GTGCTCATGTCCTCAATTGCCGGAGTCGTGCATGTCAGTGTTGGATCCATCTATGGAGCA 983
Query 1038 ACAAAAGGAGCCATGAATCAGTTGGCTAGAAACTTAGCTTGCGAATGGGCAAGCGACAAC 1097
|| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 984 ACCAAAGGAGCCATGAATCAGCTGGCTAGAAACTTAGCTTGCGAATGGGCTAGCGACAAC 1043
Query 1098 ATAAGGACTAACGCTATTTGTCCATGGTTAATCACAACTCCTTTGATTAGTGATCTTCTC 1157
||||| |||||||||||||||||| || |||||| |||||||||||||||||||| ||||
Sbjct 1044 ATAAGAACTAACGCTATTTGTCCAGGGGTAATCAAAACTCCTTTGATTAGTGATCATCTC 1103
Query 1158 AGTGTTGAGGAGATGAAAAAAGAAGCAGAGGAAAGGACACCCATGGGGCGTGTGGGAGAG 1217
|||| | | ||||| ||||||||||||||| || ||| ||| |||||||| || ||||||
Sbjct 1104 AGTGATAAAGAGATTAAAAAAGAAGCAGAGCAACGGATACCGATGGGGCGCGTTGGAGAG 1163
Query 1218 GCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACT 1277
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1164 GCAAATGAAGTTTCATCGCTTGTGGCATTTCTCTGTCTTCCTGCAGCTTCTTATATTACT 1223
Query 1278 GGTCAAG-TCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTCCTATCAGCCACA 1336
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GGTC-AGACCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTCCTATCAGCCACA 1282
Query 1337 TGCTTGAGCTAGGTCTG-TGTTGTGTGTATTGTCCAATGAAAACAGT 1382
||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1283 GGCTTGAGCTAGGTCTTATGTTGTGTGTGTTGTCCAATGAAAACAGT 1329
Score = 475 bits (257), Expect = 3e-133
Identities = 308/332 (93%), Gaps = 6/332 (2%)
Strand=Plus/Plus
Query 1 AAGCTCTTGTTAGTTAT--GTGATAGATAAAGATGGATAACAGCCGATGGAGTCTTCAAG 58
||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1 AAGCTCTTGTTAGTTATAAGTTATAGATAAAGATGGATAACAGCAGATGGAGTCTTCAAG 60
Query 59 GTATGACTGCTCTTCTGACCGGTGGAGCGGGAGGAATTGGGCATGCCATAGTAGAGGAGC 118
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GTATGACTGCTCTTGTGACTGGTGGAGCGGGAGGAATCGGGCATGCCATAGTAGAGGAGC 120
Query 119 TAGCTGGTTTTGGG-CCAAAGTCCATGTATCCGACATATCTGAAACACTGCTCAATCAAA 177
|||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 121 TAGCCGGTTTTGGGGCCAAAGTCCATGTATGCGACATATCTGAAACACTGCTCAACCAAA 180
Query 178 GTTTAAGCGAATGGGAAAAGAAAGGATTTCAAGTGAGTGGTACAATCTGTGATGTATCCT 237
||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 181 GTTTAAGAGAATGGGAAAAGAAAGGGTTTCAAGTGAGTGGTTCAATCTGTAATGTATCCT 240
Query 238 CTCGT-CCGGAGAGAGAAACACTC-TGCAAACTGTCTCCTCGTTGTTTGAGGGCAAGCTC 295
||||| ||| |||||||||||||| ||||||| ||||||||| ||||||| ||||| ||
Sbjct 241 CTCGTTCCG-AGAGAGAAACACTCATGCAAACCGTCTCCTCGCTGTTTGATGGCAAACTG 299
Query 296 AACATTCTTGTAAGACGTTTGTGAGTGAAGTT 327
|||||||||||||||| |||||||||||||||
Sbjct 300 AACATTCTTGTAAGACTTTTGTGAGTGAAGTT 331
Score = 69.4 bits (37), Expect = 7e-11
Identities = 51/57 (89%), Gaps = 3/57 (5%)
Strand=Plus/Plus
Query 27 AAAGATGGATAACAGCCGATGGAGTCTTCAAGGTATGACTGCTCTTCTGACCGGTGG 83
||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 497 AAAAATGGATAA-A--AGATGGAGTCTTCAAGGTATGACTGCTCTTGTGACCGGTGG 550
> Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1
Length=1118
Score = 950 bits (514), Expect = 0.0
Identities = 691/775 (89%), Gaps = 18/775 (2%)
Strand=Plus/Plus
Query 563 AAGATGGAGTCTTCAAGGTATGAATGCTCTTGTGACCGGTGGCACTAAAGGCATCGGGGA 622
||||||||||||| ||| ||||| |||||||| || |||||| ||||||||||||||||
Sbjct 136 AAGATGGAGTCTTGGAGGCATGAACGCTCTTGTCACTGGTGGCTCTAAAGGCATCGGGGA 195
Query 623 AGCTGTTGTGGAGGAACT-GTCAATTTTGGGAGCAAGAGTCCACACATGTGCTAGAGACG 681
|||||| || |||||||| | |||| |||||||||||||||||||||||||| |||||||
Sbjct 196 AGCTGTGGTAGAGGAACTAG-CAATATTGGGAGCAAGAGTCCACACATGTGCCAGAGACG 254
Query 682 AGACTCAGCTTCAAGAACGTTTACGTGAATGGCAAGAAAAAGGGTTTCAGGTCACCACTT 741
| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 255 AAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCCAAAGGGTTTCAGGTCACCACTT 314
Query 742 CTATCTGCGACGTTTCTT-TGCGTGAGCAACGAGAGAAACTCATGGAAACCGTTTCCTCT 800
|| |||||||||| |||| | ||||| ||||||| ||||||||||||||| |||||||||
Sbjct 315 CTGTCTGCGACGTCTCTTCT-CGTGACCAACGAGTGAAACTCATGGAAACTGTTTCCTCT 373
Query 801 CTCTTCCAAGGAAAACTCAACATCCTCGTGAACAATGTGGGAACGTTAATGCTCAAGCCG 860
|||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 374 CTCTACCAAGGAAAACTCAACATCCTCGTCAACAATGTGGGAACGTCAATATTCAAGCCG 433
Query 861 ACCACAGAGTATACAGCAGAAGAATTCTCGTTTCTTATGGCTACAAATCTCGACTCAGCT 920
||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| ||||||
Sbjct 434 ACCACAGAGTATACAGCAGAAGATTTCTCTTTTGTAATGGCTACAAATCTCGAGTCAGCT 493
Query 921 TTCCATATTTCACAGCTTGCGCACCCTTTGTTGAAAGCCTCTGGCTCAGGGAGCATTGTG 980
|||||| | ||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 494 TTCCATCTCTCACAGCTTGCGCACCCATTGTTGAAAGCCTCCGGCTCAGGGAGCATCGTG 553
Query 981 CTCATGTCCTCTATTGCCGGAGTCGTGCATGTCGGTGTTGGATCCATCTATGGAGCAACA 1040
||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 554 CTCATGTCCTCTACTGCTGGAGTCGTGCATGTCAATGTTGGATCCATCTATGGAGCAACC 613
Query 1041 AAAGGAGCCATGAATCAGTTGGCTAGAAACTTAGCTTGCGAATGGGCAAGCGACAACATA 1100
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 614 AAAGGAGCCATGAATCAGCTGGCTAGAAACTTAGCTTGCGAATGGGCGAGCGACAACATA 673
Query 1101 AGGACTAACGCTATTTGTCCATGGTTA-ATCACAACTCCTTTGATTAGTGATCTTCTCAG 1159
||||||||| || ||||||| ||| || ||||||||| |||||| || ||| || ||
Sbjct 674 AGGACTAACTCTGTTTGTCCTTGG-TATATCACAACTTCTTTGAGTAACGATTTTTTC-- 730
Query 1160 TGTTGAGGAGATGAAAAAAGAAGCAGAG-GAAAGGACACCCATGGGGCGTGTGGGAGAGG 1218
| ||| ||| | || |||||||| | | | |||||||| ||||| ||||| |||||||
Sbjct 731 -GATGAAGAGTTTAAGAAAGAAGCGGTGCG-TAGGACACCGATGGGACGTGTTGGAGAGG 788
Query 1219 CAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACTG 1278
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CAAATGAAGTCTCATCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACTG 848
Query 1279 GTCAAGTC-ATTTGTGTTGATGGAGGT-CTCACTGTTAATGG-CTTCTCCTATCA 1330
|||| | | ||||||||||| |||||| | |||||| ||||| ||| |||| |||
Sbjct 849 GTCA-GACCATTTGTGTTGACGGAGGTGC-CACTGTCAATGGTCTT-TCCT-TCA 899
> Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1
Length=819
Score = 730 bits (395), Expect = 0.0
Identities = 648/770 (84%), Gaps = 18/770 (2%)
Strand=Plus/Plus
Query 564 AGATGGAGTCTTCAAGGTATGAATGCTCTTGTGACCGGTGGCACTAAAGGCATCGGGGAA 623
|||||||||||| |||| |||| ||||||||| ||||||||| | ||||||||||| |||
Sbjct 37 AGATGGAGTCTTGAAGGCATGACTGCTCTTGTTACCGGTGGCTCCAAAGGCATCGGAGAA 96
Query 624 GCTGTTGTGGAGGAACT-GTCAAT-TTTGGGAGCAAGAGTCCACACATGTGCTAGAGACG 681
||||| ||||||||||| | | || ||| ||||||||||| ||||||||||| |||||||
Sbjct 97 GCTGTGGTGGAGGAACTAG-CCATGTTT-GGAGCAAGAGTTCACACATGTGCCAGAGACG 154
Query 682 AGACTCAGCTTCAAGAACGTTTACGTGAATGGCAAGAAAAAGGGTTTCAGGTCACCACTT 741
| ||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||
Sbjct 155 AAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCCAAAGGGTTACAAGTCACCACTT 214
Query 742 CTATCTGCGACGTTTCTT-TGCGTGAGCAACGAGAGAAACTCATGGAAACCGTTTCCTCT 800
|| | ||||| ||||||| | ||||| || |||| ||||||||||||||| |||||||||
Sbjct 215 CTGTTTGCGATGTTTCTTCT-CGTGACCAGCGAGTGAAACTCATGGAAACTGTTTCCTCT 273
Query 801 CTCTTCCAAGGAAAACTCAACATCCTCGTGAAC-AATGTGGGAACGT-TAATGCTCAAGC 858
||||||||||||||||||||||||||||| | | |||||||||||| | || | ||||
Sbjct 274 CTCTTCCAAGGAAAACTCAACATCCTCGT-ACCCAATGTGGGAACGGGTG-TGGTAAAGC 331
Query 859 CGACCACAGAGTATACAGCAGAAGAATTCTCGTTTCTTATGGCTACAAATCTCGACTCAG 918
|||||||||||| |||| ||||||| ||||| ||| | |||||||||||||| || |||
Sbjct 332 CGACCACAGAGTGTACATCAGAAGAGTTCTCTTTTATAATGGCTACAAATCTGGAGTCAA 391
Query 919 CTTTCCATATTTCACAGCTTGCGCACCCTTTGTTGAAAGCCTCTGGCTCAGGGAGCATTG 978
|||||||| | || || || ||||||||||| |||||||||||||| ||||||| |||||
Sbjct 392 CTTTCCATCTCTCGCAACTCGCGCACCCTTTATTGAAAGCCTCTGGTTCAGGGAACATTG 451
Query 979 TGCTCATGTCCTCTATTGCCGGAGTCGTGCATGTCGGTGTTGGATCCATCTATGGAGCAA 1038
|||||||||| || ||| || || || || | ||| | ||| |||||||||||||
Sbjct 452 TGCTCATGTCTTCCGCTGCTGGGGTTGTAAATTTGGGTAATACATCAATCTATGGAGCAA 511
Query 1039 CAAAAGGAGCCATGAATCAGTTGGCTAGAAACTTAGCTTGCGAATGGGCAAGCGACAACA 1098
| |||||||||||||||||| |||| ||||| || || ||||| ||||| || || ||||
Sbjct 512 CCAAAGGAGCCATGAATCAGCTGGCGAGAAATTTGGCATGCGAGTGGGCGAGTGATAACA 571
Query 1099 TAAGGACTAACGCTATTTGTCCATGGTTAATCACAACTCCTTTGATTAGTGATCTTCTCA 1158
||||| ||||| || ||||||||||||| ||||||||||| | | || ||| ||||
Sbjct 572 TAAGGGCTAACTCTGTTTGTCCATGGTTCATCACAACTCCATCAAGTAAAGATTTTCTTG 631
Query 1159 GTGTTGAGGAGATGAAAAAAGAAGCAGA-GGAAAG-G--ACACCCATGGGGCGTGTGGGA 1214
||| | | ||||| |||| ||| || ||| || | ||||| |||||||| || |||
Sbjct 632 GTGATAA--AGATGTAAAA-GAAA-AGGTGGAGAGTGTGACACCGATGGGGCGCGTTGGA 687
Query 1215 GAGGCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATT 1274
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 688 GAGGCAAATGAAGTATCATCGCTTGTGGCATTTCTATGTCTTCCTGCAGCTTCTTATATT 747
Query 1275 ACTGGTCAAGTCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTC 1324
||||||||| |||||| |||||||||||| ||||| |||| || |||||
Sbjct 748 ACTGGTCAAACCATTTGCGTTGATGGAGGTTTCACTATTAACGGTTTCTC 797
> Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1
Length=804
Score = 704 bits (381), Expect = 0.0
Identities = 649/775 (84%), Gaps = 31/775 (4%)
Strand=Plus/Plus
Query 564 AGATGGAGTCTTCAAGGTATGAATGCTCTTGTGACCGGTGGCACTAAAGGCATCGGGGAA 623
|||||||| ||| ||| |||| |||||||||||||||||| | |||||| |||| |||
Sbjct 37 AGATGGAGCCTTGGAGGCATGACCGCTCTTGTGACCGGTGGCTCCAAAGGCCTCGGAGAA 96
Query 624 GCTGTTGTGGAGGAACT-GTCAATTTTGGGAGCAAGAGTCCACACATGTGCTAGAGACGA 682
||||| ||||||||||| | | || |||||||||||||||||||||||||| ||||||||
Sbjct 97 GCTGTGGTGGAGGAACTAG-CCATGTTGGGAGCAAGAGTCCACACATGTGCCAGAGACGA 155
Query 683 GACTCAGCTTCAAGAACGTTTACGTGAATGGCAAGAAAAAGGGTTTCAGGTCACCACTTC 742
||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 156 AACTCAGCTTCAAGAACGCTTACGTGAGTGGCAAGGAAAAGGGTTTCAGGTCACCACTTC 215
Query 743 TATCTGCGACGTTTCTT-TGCGTGAGCAACGAGAGAAACTCATGGAAACCGTTTCCTCTC 801
| | ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 216 TGTATGCGACGTTTCTTCT-CGTGACCAACGAGAGAAACTCATGGAAACCGTTTCCTCTA 274
Query 802 TCTTCCAAGGAAAACTCAACATCCTCGTGAAC-AATGTGGGAAC-GTTA-ATGCTCAAGC 858
|||||||||||||||||||||||||||| || |||| |||||| | || | || ||||
Sbjct 275 TCTTCCAAGGAAAACTCAACATCCTCGT-AAGTAATGCGGGAACCGGTATA-GCA-AAGC 331
Query 859 CGACCACAGAGTATACAGCAGAAGAATT-CTCGTTTCTTATGGCTACAAATCTCGACTCA 917
|||| || |||| ||||||| |||| || ||||||||| ||||||||||||||||| |||
Sbjct 332 CGACTACTGAGTTTACAGCACAAGA-TTACTCGTTTCTGATGGCTACAAATCTCGAGTCA 390
Query 918 GCTTTCCATATTTCACAGCTTGCGCACCCTTTGTTGAAAGCCTCTGGCTCAGGGAGCATT 977
||||| ||||| ||||||||||| || ||||| || ||||| || | | |||||||||
Sbjct 391 GCTTTTCATATCTCACAGCTTGCTCATCCTTTATTAAAAGCTTCAAGTTTAGGGAGCATC 450
Query 978 GTGCTCATGTCCTCTATTGCCGGAGTCGTGCATGTCGGTGTTGGATCCATCTATGGAGCA 1037
||| ||||||||||| |||| ||| | |||||| | | || | ||||||||||||||||
Sbjct 451 GTGTTCATGTCCTCTGTTGCTGGACTTGTGCATA-CTG-GT-GCATCCATCTATGGAGCA 507
Query 1038 ACAAAAGGAGCCATGAATCAGTT-GGCTAGAAACTTAGCTTGCGAATGGGCAAGCGACAA 1096
||||||||||| ||||||||| | || ||||||||||| ||||| |||||||| |||||
Sbjct 508 ACAAAAGGAGCTATGAATCAGCTAGGA-AGAAACTTAGCATGCGAGTGGGCAAGTGACAA 566
Query 1097 CATAAGGACTAACGCTATTTGTCCATGGTTAATCA-CAACTCCTTT-G--ATTAGTGATC 1152
||||||| |||| || | ||||||||| | || | |||||||||| | | | | ||
Sbjct 567 CATAAGGGTTAACTCTGTGTGTCCATGGGTCAT-AGCAACTCCTTTAGCCAGCATT-AT- 623
Query 1153 TTCTCAGTGTTGAGGAGATGAAAAAAGAAGCAGAG-GAAAGGACACCCATGGGGCGTGTG 1211
|| |||||| ||| ||| | ||||||| || ||| | ||| ||||| ||||| |||||
Sbjct 624 TT-TCAGTGATGAAGAGTTTAAAAAAGCAGTGGAGAGTAAG-ACACCAATGGGACGTGTT 681
Query 1212 GGAGAGGCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTAT 1271
||| | ||||||||||||||| ||||||| |||||||| ||| |||| ||||||||||||
Sbjct 682 GGAAAAGCAAATGAAGTCTCATCGCTTGTCGCATTTCTCTGTTTTCCGGCAGCTTCTTAT 741
Query 1272 ATTACTGGTCA-AGTCATTTGTGTTGATGGAGGT-CTCACTGTTAATGGCTTCTC 1324
|| || ||||| | | || ||||| ||||||||| | | | || || ||||||||
Sbjct 742 ATAACGGGTCAGACT-ATCTGTGTCGATGGAGGTGC-CTCGGTGAACGGCTTCTC 794
> Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1
Length=798
Score = 664 bits (359), Expect = 0.0
Identities = 638/771 (83%), Gaps = 26/771 (3%)
Strand=Plus/Plus
Query 564 AGATGGAGTCTTCAAGGTATGAATGCTCTTGTGACCGGTGGCACTAAAGGCATCGGGGAA 623
|||||||| ||| |||| |||| |||||||| ||||||||| | |||||| |||| |||
Sbjct 37 AGATGGAGCCTTGAAGGCATGACCGCTCTTGTTACCGGTGGCTCCAAAGGCCTCGGAGAA 96
Query 624 GCTGTTGTGGAGGAACT-GTCAAT-TTTGGGAGCAAGAGTCCACACATGTGCTAGAGACG 681
||||| ||||||||||| | | || ||| ||||||||||||||||||||||| |||||||
Sbjct 97 GCTGTAGTGGAGGAACTAG-CCATGTTT-GGAGCAAGAGTCCACACATGTGCCAGAGACG 154
Query 682 AGACTCAGCTTCAAGAACGTTTACGTGAATGGCAAGAAAAAGGGTTTCAGGTCACCACTT 741
| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct 155 AAACTCAGCTTCAAGAACGATTACGTGAATGGCAAGCAAAAGGGTTTCAAGTCACCACTT 214
Query 742 CTATCTGCGACGTTTCTT-TGCGTGAGCAACGAGAGAAACTCATGGAAACCGTTTCCTCT 800
|| ||||||| ||||||| | ||||| ||||||||||||||||||||||||||| |||||
Sbjct 215 CTGTCTGCGATGTTTCTTCT-CGTGACCAACGAGAGAAACTCATGGAAACCGTTGCCTCT 273
Query 801 CTCTTCCAAGGAAAACTCAACATCCTCGTGAACAATGTGGGAACGT-TAATGCTCAAGCC 859
||||||||||||||||||||||||||||| ||||||| ||||||| || | || |||||
Sbjct 274 CTCTTCCAAGGAAAACTCAACATCCTCGTAAACAATGCGGGAACGGGTA-TACTAAAGCC 332
Query 860 GACCACAGAGTATACAGCAGAAGAATT-CTCGTTTCTTATGGCTACAAATCTCGACTCAG 918
||| | ||||||||||| | |||| || |||||||| ||||||||||||||||| || |
Sbjct 333 GACTATAGAGTATACAGAACAAGA-TTACTCGTTTCAGATGGCTACAAATCTCGAGTCCG 391
Query 919 CTTTCCATATTTCACAGCTTGCGCACCCTTTGTTGAAAGCCTCTGGCTC-AGGGAGCATT 977
|||| ||| | |||||||| || || ||||| || ||||| || | | |||||||||
Sbjct 392 CTTTTCATCTATCACAGCTCGCTCATCCTTTATTAAAAGCTTC-GAATTTAGGGAGCATC 450
Query 978 GTGCTCATGTCCTCTATTGCCGGAGTCGTGCATGTCGGTGTTGGATCCATCTATGGAGCA 1037
||| ||||||||||| |||| ||| | || ||| ||||| ||||||||||||||||
Sbjct 451 GTGTTCATGTCCTCTGTTGCTGGACTTGTACATACCGGTGC---ATCCATCTATGGAGCA 507
Query 1038 ACAAAAGGAGCCATGAATCAGTT-GGCTAGAAACTTAGCTTGCGAATGGGCAAGCGACAA 1096
|| |||||||| ||||||||| | || ||| ||||||| ||||| |||||||| |||||
Sbjct 508 ACCAAAGGAGCTATGAATCAGCTAGGA-AGAGACTTAGCATGCGAGTGGGCAAGTGACAA 566
Query 1097 CATAAGGACTAACGCTATTTGTCCATGGTTAATCACAACTCCTTTGATTAGTGATCTTCT 1156
||||||| |||| | | ||||||||| | || ||||||||||| | ||| | || |
Sbjct 567 CATAAGGGTTAACTCGGTGTGTCCATGGGTCATAACAACTCCTTTAACTAGC--T-TTAT 623
Query 1157 CAGTGTTGAGGAGATGAA-AAAAGAAGCAGAGGA-AAGGACACCCATGGGGCGTGTGGGA 1214
|||| ||| || | || ||||| || ||||| ||| ||||| ||||| ||||| |||
Sbjct 624 TAGTGATGAAAAGTT-AAGAAAAGCAGTGGAGGATAAG-ACACCAATGGGACGTGTTGGA 681
Query 1215 GAGGCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATT 1274
|| | |||||||| ||| ||||||| |||||||||||| |||| ||||||||||||||
Sbjct 682 GAAGTGAATGAAGTATCATCGCTTGTCGCATTTCTTTGTTTTCCGGCAGCTTCTTATATA 741
Query 1275 ACTGGTCA-AGTCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTC 1324
|||||||| | | || || || || |||||| || | || || ||||||||
Sbjct 742 ACTGGTCAGACT-ATCTGCGTCGACGGAGGTGTCTCGGTGAACGGCTTCTC 791
> Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1
Length=809
Score = 182 bits (98), Expect = 8e-45
Identities = 601/834 (72%), Gaps = 73/834 (9%)
Strand=Plus/Plus
Query 546 CAAGAAAAAATGGATAAAAGATGGAGTCTTCAAGGTATGAATGCTCTTGTGACCGGTGGC 605
|||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1 CAAG-AAAAATGGATAAAAGATGGAGTCTTCAATGTATGACTGCTCTTGTGACCGGTGG- 58
Query 606 A-CTAAAGGCATCGGGGAAGCTGTTGTGGAGGAACT-GTCAA-TTTTGGGAGCAAGAGTC 662
| | | || || || | || | || ||||| | | | | |||||| ||| ||| ||
Sbjct 59 AGCCAGCGGAATTGGTTATGCCATAGTAGAGGAGTTAG-CTAGTTTTGG-AGCTAGAATC 116
Query 663 CACACATGTG-CTAGAGAC-GAGACTCAGCTTCAAG-AACGTTTACGTGAATGGCAAGAA 719
|| ||||| | | | || |||| || ||| || ||||| |||||||| || ||
Sbjct 117 CATGTATGTGAC-ATCT-CTGAAACTCTTCT-CAATCAAAGTTTAAGTGAATGGGAA-AA 172
Query 720 -AAAGGGTTTCAGGTCACCACTTCTA-TCTGCGACGTTTCTT-TGCGTGA-GCA-ACGAG 774
||||||||||| || | ||| | |||| || || ||| | ||| | | | |||
Sbjct 173 GAAAGGGTTTCAAGTGAGTGGTTC-AGTCTGTGATGTAACTTCT-CGTCCCG-ATA-GAG 228
Query 775 AGAAACTCATGGAAACCGTTTCCTCTCTCTTCCAAGGAAAACTCAACATCCTCGTGAACA 834
| ||||| ||| ||||||||||||| || || | || ||||||||||| || || ||||
Sbjct 229 AAAAACTGATGCAAACCGTTTCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAAACA 288
Query 835 ATGT-GG-GAACGTTAATGCTCAAGCCGACCACAGAGTATACAGCAGAAGAATTCTCGTT 892
|||| || | || || | |||| || || || ||| ||||| || ||||| ||
Sbjct 289 ATGTTGGTGTAC-TTCGCGGG-AAGCTAACAACGGAATATGTGGCAGATGATTTCTCTTT 346
Query 893 TCTTATGGCTACAAATCTCGACTCAGCTTTCCATATTTCA-C-AGCTTGCGCACCCTTTG 950
|| || | |||||| | || | ||||||||| ||| | | ||||| | || ||| |
Sbjct 347 TCACATCTCAACAAATTTGGAAGCTGCTTTCCAT-TTT-AGCCAGCTTTCACATCCTCTC 404
Query 951 TTGAAAGCCT-CTGGCTCAGGGAGCATTGTGCTC-ATGTCCTCTATTGCCGG-AGTCGTG 1007
|| |||| || | || | || ||||| || || ||||||||| | | || | | ||
Sbjct 405 TT-AAAGGCTTCAGGATTTGGAAGCATCGT-CTTTATGTCCTCTGTCACAGGGATT-GTA 461
Query 1008 -CATGTCGG-TGTTGGATCCATCTATGGAGC-AACAAAAGGAGCCATGAATCAGTTGGCT 1064
|| || | ||| |||||||| ||||| | ||| |||||||| |||||||||| ||
Sbjct 462 TCA-GTTGAATGT-GGATCCATTTATGGT-CTAACGAAAGGAGCTTTGAATCAGTTAACT 518
Query 1065 AGAAACTTAGCTTGCGAATGGGCAAGCGACAACATAAG-GACTAACGCTATTTGT-CC-A 1121
||||| || || || |||||||||| || |||||| | | || ||| || | || |
Sbjct 519 AGAAATTTGGCATGTGAATGGGCAAAAGATGGCATAAGAGCC-AATGCTGTT-GCACCTA 576
Query 1122 -TGGTTAATCACA-ACTCCTTTGAT-T-AGTGATCTTCTC-AGTGTTGAGGAGATGAAAA 1176
|| || ||| | |||||| || | | | | | | ||| || | | | | | ||
Sbjct 577 ATG-TTG-TCA-AGACTCCTCTG-TCTCAATCTTAT-CTCGAG-GACGTCG-GTTTCAAG 629
Query 1177 AAGA-A--GCAGAGGAAAGGACACC-CATGGGGCGTGTGGGAGAGGCAAATGAAGTCT-C 1231
|| | | ||| | | || || | ||| ||||| |||||| |||||||||| | |
Sbjct 630 GAGGGATTGTTGAGTAGA--ACTCCACTTGGT-CGTGTTGGAGAGCCAAATGAAGT-TGC 685
Query 1232 ACCGCTTGTGG-CATTTCTT-TGTCTTCCTGCAGCTTCTTATATTACTGGTCAAGTCATT 1289
| | || |||| | || ||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 686 ATCACTAGTGGTC-TT-CTTGTGTCTACCTGCAGCTTCTTATATTACTGGTCAAACCATT 743
Query 1290 TGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTCCTATCAGCCACATGCTTGA 1343
||| ||||||| ||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct 744 TGTATTGATGGTGGTTTCACTGTTAATGGATTCTCCTATCAGCCACAGGCTTGA 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5