BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29350.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1 1653 0.0
Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2 894 0.0
Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1 835 0.0
Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1 789 0.0
Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1 754 0.0
> Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1
Length=1118
Score = 1653 bits (895), Expect = 0.0
Identities = 1011/1065 (95%), Gaps = 15/1065 (1%)
Strand=Plus/Plus
Query 16 GAGGTTTCAAAGTTCAAAACTATCACAACTAGTCTTGATCAATTCTATATAAGATCTGTG 75
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1 GAGGTTTCAAAGTTCAAAACTATCACTACTAGTCTTGATCAATTCTCTATAAGATCTGTG 60
Query 76 ATCTTGGTTGAAGAAAAGAATCGTCGTAGGTTGATATTTAACAAGGAATGGCAAAGGAAG 135
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 61 ATCTTGGTTGAAGAAAAGAATCGTCGCAGGTTG--A--TAACAAGGAATGGCAAAGGAAG 116
Query 136 GGGGCTTGGGAGAGAACTCAAGATGGAGTCTTGGAGGCATGACCGCTCTTGTCACTGGTG 195
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 117 GGGGCTTGGGAGAGAACTCAAGATGGAGTCTTGGAGGCATGAACGCTCTTGTCACTGGTG 176
Query 196 GCTCTAAAGGCATCGGGGAAGCTGTGGTGGAGGAACTAGCCATGTTGGGAGCAAAAGTCC 255
|||||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||
Sbjct 177 GCTCTAAAGGCATCGGGGAAGCTGTGGTAGAGGAACTAGCAATATTGGGAGCAAGAGTCC 236
Query 256 ACACGTGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCAAAAG 315
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 ACACATGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCCAAAG 296
Query 316 GGTTTCAGGTCACCACTTCTGTCTGCGACGTCTCTTCTCGTGACCAACGAGTGAAACTCA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGTTTCAGGTCACCACTTCTGTCTGCGACGTCTCTTCTCGTGACCAACGAGTGAAACTCA 356
Query 376 TGGAAACTGTTTCCTCTCTCTACCAAGGAAAACTCAACATCCTCGTCAACAATGTGGGAA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGGAAACTGTTTCCTCTCTCTACCAAGGAAAACTCAACATCCTCGTCAACAATGTGGGAA 416
Query 436 CGTCAATATTCAAGCCGACCACAGAGTATACAGCAGAAGATTTCTCTTTTGTAATGGCTA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGTCAATATTCAAGCCGACCACAGAGTATACAGCAGAAGATTTCTCTTTTGTAATGGCTA 476
Query 496 CAAATCTCGAGTCAGCTTTCCATCTCTCACAGCTTGCCCACCCATTGTTAAAAGCCTCTG 555
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 477 CAAATCTCGAGTCAGCTTTCCATCTCTCACAGCTTGCGCACCCATTGTTGAAAGCCTCCG 536
Query 556 GCTCAGGGAGCATCGTGCTCATATCCTCTGCTGCTGGAGTCGTGCATGTCAATGTTGGAT 615
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 537 GCTCAGGGAGCATCGTGCTCATGTCCTCTACTGCTGGAGTCGTGCATGTCAATGTTGGAT 596
Query 616 CCATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTGGCTAGAAACTTAGCTTGCGAAT 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTGGCTAGAAACTTAGCTTGCGAAT 656
Query 676 GGGCGAGCGACAACATAAGGACGAACTCTGTTTGTCCTTGGTATATCACAACTCCTTTAA 735
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 657 GGGCGAGCGACAACATAAGGACTAACTCTGTTTGTCCTTGGTATATCACAACTTCTTTGA 716
Query 736 GTAACGATTTTTTCGATGAAGAGTTTAAGAAAGAAGCGGTGCGTACGACACCAATGGGGC 795
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct 717 GTAACGATTTTTTCGATGAAGAGTTTAAGAAAGAAGCGGTGCGTAGGACACCGATGGGAC 776
Query 796 GTGTTGGAGAAGCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTTCAGCTT 855
|||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 777 GTGTTGGAGAGGCAAATGAAGTCTCATCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTT 836
Query 856 CTTATATTACTGGTCAGACCATTTGCGTTGACGGCGGTGCCACTGTTAACGGTTTTTCCT 915
||||||||||||||||||||||||| |||||||| ||||||||||| || ||| ||||||
Sbjct 837 CTTATATTACTGGTCAGACCATTTGTGTTGACGGAGGTGCCACTGTCAATGGTCTTTCCT 896
Query 916 TCAAGACTATGCCATAAAACACATAT-GCAT----GT--GT-TT-GGATCATATTTTCAA 966
|||||||| |||| |||||||||||| | || || || || |||||||||||||||
Sbjct 897 TCAAGACTCTGCCTTAAAACACATATAGTATATATGTATGTGTTTGGATCATATTTTCAA 956
Query 967 TAATTTAAACTTACGGGTTATATACATCGTCAATATGTAATAAATGTAATTTAGATGTGT 1026
| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 TTATT-AAACCTACGGGTTATATACATCGTCTATATGTAATAAATGTAATTTAGATGTGT 1015
Query 1027 C-CACATGTTCTGTTTCTAAGAGATTCTTAGATATTTATGCTTGC 1070
||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 1016 TTCACATGTTCTGTTTCTATGAGATCCTTAGATATATATGCTTGC 1060
> Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2
Length=1329
Score = 894 bits (484), Expect = 0.0
Identities = 679/773 (88%), Gaps = 14/773 (2%)
Strand=Plus/Plus
Query 155 AAGATGGAGTCTTGGAGGCATGACCGCTCTTGTCACTGGTGGCTCTAAAGGCATCGGGGA 214
||||||||||||| ||| ||||| |||||||| || |||||| ||||||| ||||||||
Sbjct 509 AAGATGGAGTCTTCAAGGTATGACTGCTCTTGTGACCGGTGGCACTAAAGGAATCGGGGA 568
Query 215 AGCTGTGGTGGAGGAACTAGCCATGTTGGGAGCAAAAGTCCACACGTGTGCCAGAGACGA 274
||||||||||||||||||| | || |||||||||| ||||||||| ||||||||||||||
Sbjct 569 AGCTGTGGTGGAGGAACTATCAATCTTGGGAGCAATAGTCCACACATGTGCCAGAGACGA 628
Query 275 AACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCAAAAGGGTTTCAGGTCACCACTTC 334
||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||
Sbjct 629 GACTCAGCTTCAAGAACGTTTGCTTGAATGGCAAGAAAAAGGGTTTCAGGTCACCACTTC 688
Query 335 TGTCTGCGACGTCTCTTCT-CGTGACCAACGAGTGAAACTCATGGAAACTGTTTCCTCTC 393
|||||||||||| || ||| ||||||||||||| ||||||||| ||||| ||||||||||
Sbjct 689 TGTCTGCGACGTTTC-TCTGCGTGACCAACGAGAGAAACTCATCGAAACCGTTTCCTCTC 747
Query 394 TCTACCAAGGAAAACTCAACATCCTCGTCAACAATGTGGGAACGTCAATA-TTCAAGCCG 452
||| ||||||||||||||| |||||||| ||||||| ||||||| ||| || ||||||
Sbjct 748 TCTTCCAAGGAAAACTCAATATCCTCGTAAACAATGCAGGAACGTTTATACTT-AAGCCG 806
Query 453 ACCACAGAGTATACAGCAGAAGATTTCTCTTTTGTAATGGCTACAAATCTCGAGTCAGCT 512
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 807 ACCACAGAGTATACAGCAGAAGAATTCTCGTTTATAATGGCTACAAATCTCGAGTCAGCT 866
Query 513 TTCCATCTCTCACAGCTTGCCCACCCATTGTTAAAAGCCTCTGGCTCAGGGAGCATCGTG 572
|||||| | |||||||| || ||||| ||||| ||||||||||||||||||||||| |||
Sbjct 867 TTCCATATTTCACAGCTAGCGCACCCTTTGTTGAAAGCCTCTGGCTCAGGGAGCATTGTG 926
Query 573 CTCATATCCTCTGCTGCTGGAGTCGTGCATGTCAATGTTGGATCCATCTATGGAGCAACC 632
||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 927 CTCATGTCCTCAATTGCCGGAGTCGTGCATGTCAGTGTTGGATCCATCTATGGAGCAACC 986
Query 633 AAAGGAGCCATGAATCAGCTGGCTAGAAACTTAGCTTGCGAATGGGCGAGCGACAACATA 692
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 987 AAAGGAGCCATGAATCAGCTGGCTAGAAACTTAGCTTGCGAATGGGCTAGCGACAACATA 1046
Query 693 AGGACGAACTCTGTTTGTCCTTGG-TATATCACAACTCCTTTAAGTAACGATTTTTTC-G 750
|| || ||| || ||||||| || || |||| ||||||||| | || ||| | || |
Sbjct 1047 AGAACTAACGCTATTTGTCCAGGGGTA-ATCAAAACTCCTTTGATTAGTGATCATCTCAG 1105
Query 751 --ATGAAGAGTTTAAGAAAGAAGCGGTGCGTACG-ACACCAATGGGGCGTGTTGGAGAAG 807
|| ||||| |||| |||||||| | || ||| | ||| |||||||| |||||||| |
Sbjct 1106 TGATAAAGAGATTAAAAAAGAAGCAGAGCA-ACGGATACCGATGGGGCGCGTTGGAGAGG 1164
Query 808 CAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTTCAGCTTCTTATATTACTG 867
|||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1165 CAAATGAAGTTTCATCGCTTGTGGCATTTCTCTGTCTTCCTGCAGCTTCTTATATTACTG 1224
Query 868 GTCAGACCATTTGCGTTGACGGCGGTGC-CACTGTTAACGGTTTTTCCT-TCA 918
||||||||||||| ||||| || ||| | ||||||||| || || |||| |||
Sbjct 1225 GTCAGACCATTTGTGTTGATGGAGGT-CTCACTGTTAATGGCTTCTCCTATCA 1276
> Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1
Length=819
Score = 835 bits (452), Expect = 0.0
Identities = 686/799 (86%), Gaps = 16/799 (2%)
Strand=Plus/Plus
Query 123 ATGGCAAAGGA-AGGGG---GCTTGGGAGA-GAACTCAAGATGGAGTCTTGGAGGCATGA 177
|||||||| || ||||| ||||| |||| ||| | ||||||||||||| ||||||||
Sbjct 1 ATGGCAAA-GAGAGGGGAAAGCTTGAGAGACAAAC-CTAGATGGAGTCTTGAAGGCATGA 58
Query 178 CCGCTCTTGTCACTGGTGGCTCTAAAGGCATCGGGGAAGCTGTGGTGGAGGAACTAGCCA 237
| |||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 59 CTGCTCTTGTTACCGGTGGCTCCAAAGGCATCGGAGAAGCTGTGGTGGAGGAACTAGCCA 118
Query 238 TGTTGGGAGCAAAAGTCCACACGTGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTAC 297
|||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTTTGGAGCAAGAGTTCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTAC 178
Query 298 GTGAATGGCAAGCAAAAGGGTTTCAGGTCACCACTTCTGTCTGCGACGTCTCTTCTCGTG 357
||||||||||||| |||||||| || |||||||||||||| ||||| || ||||||||||
Sbjct 179 GTGAATGGCAAGCCAAAGGGTTACAAGTCACCACTTCTGTTTGCGATGTTTCTTCTCGTG 238
Query 358 ACCAACGAGTGAAACTCATGGAAACTGTTTCCTCTCTCTACCAAGGAAAACTCAACATCC 417
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 ACCAGCGAGTGAAACTCATGGAAACTGTTTCCTCTCTCTTCCAAGGAAAACTCAACATCC 298
Query 418 TCGTCAAC-AATGTGGGAACGTCAATATTCAAGCCGACCACAGAGTATACAGCAGAAGAT 476
|||| | | |||||||||||| | | |||||||||||||||| |||| |||||||
Sbjct 299 TCGT-ACCCAATGTGGGAACGGGTGTGGTAAAGCCGACCACAGAGTGTACATCAGAAGAG 357
Query 477 TTCTCTTTTGTAATGGCTACAAATCTCGAGTCAGCTTTCCATCTCTCACAGCTTGCCCAC 536
||||||||| |||||||||||||||| |||||| ||||||||||||| || || || |||
Sbjct 358 TTCTCTTTTATAATGGCTACAAATCTGGAGTCAACTTTCCATCTCTCGCAACTCGCGCAC 417
Query 537 CCATTGTTAAAAGCCTCTGGCTCAGGGAGCATCGTGCTCATATCCTCTGCTGCTGGAGTC 596
|| || || ||||||||||| ||||||| ||| |||||||| || || |||||||| ||
Sbjct 418 CCTTTATTGAAAGCCTCTGGTTCAGGGAACATTGTGCTCATGTCTTCCGCTGCTGGGGTT 477
Query 597 GTGCATGTCAATGTTGGATCCATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTGGCT 656
|| || | | | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTAAATTTGGGTAATACATCAATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTGGCG 537
Query 657 AGAAACTTAGCTTGCGAATGGGCGAGCGACAACATAAGGACGAACTCTGTTTGTCCTTGG 716
||||| || || ||||| |||||||| || ||||||||| | |||||||||||||| |||
Sbjct 538 AGAAATTTGGCATGCGAGTGGGCGAGTGATAACATAAGGGCTAACTCTGTTTGTCCATGG 597
Query 717 TAT-ATCACAACTCCTTTAAGTAACGATTTT-TTCG--ATGAAGA-GTTTAAGAAAGAAG 771
| | ||||||||||| | |||||| |||||| || | || |||| || |||||| | |
Sbjct 598 T-TCATCACAACTCCATCAAGTAAAGATTTTCTTGGTGATAAAGATGTAAAAGAAA-AGG 655
Query 772 CGGTGCGTACGACACCAATGGGGCGTGTTGGAGAAGCAAATGAAGTCTCACCGCTTGTGG 831
|| | || |||||| |||||||| |||||||| ||||||||||| ||| |||||||||
Sbjct 656 TGGAGAGTGTGACACCGATGGGGCGCGTTGGAGAGGCAAATGAAGTATCATCGCTTGTGG 715
Query 832 CATTTCTTTGTCTTCCTTCAGCTTCTTATATTACTGGTCAGACCATTTGCGTTGACGGCG 891
||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| || |
Sbjct 716 CATTTCTATGTCTTCCTGCAGCTTCTTATATTACTGGTCAAACCATTTGCGTTGATGGAG 775
Query 892 GTGCCACTGTTAACGGTTT 910
|| |||| ||||||||||
Sbjct 776 GTTTCACTATTAACGGTTT 794
> Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1
Length=804
Score = 789 bits (427), Expect = 0.0
Identities = 671/787 (85%), Gaps = 24/787 (3%)
Strand=Plus/Plus
Query 146 AGAGAACTCAAGATGGAGTCTTGGAGGCATGACCGCTCTTGTCACTGGTGGCTCTAAAGG 205
||| || || |||||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct 27 AGACAAATCTAGATGGAGCCTTGGAGGCATGACCGCTCTTGTGACCGGTGGCTCCAAAGG 86
Query 206 CATCGGGGAAGCTGTGGTGGAGGAACTAGCCATGTTGGGAGCAAAAGTCCACACGTGTGC 265
| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 87 CCTCGGAGAAGCTGTGGTGGAGGAACTAGCCATGTTGGGAGCAAGAGTCCACACATGTGC 146
Query 266 CAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCAAAAGGGTTTCAGGT 325
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 147 CAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAGTGGCAAGGAAAAGGGTTTCAGGT 206
Query 326 CACCACTTCTGTCTGCGACGTCTCTTCTCGTGACCAACGAGTGAAACTCATGGAAACTGT 385
|||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 207 CACCACTTCTGTATGCGACGTTTCTTCTCGTGACCAACGAGAGAAACTCATGGAAACCGT 266
Query 386 TTCCTCTCTCTACCAAGGAAAACTCAACATCCTCGTCAAC-AATGTGGGAAC-G-TCAAT 442
||||||| ||| |||||||||||||||||||||||| || |||| |||||| | | | |
Sbjct 267 TTCCTCTATCTTCCAAGGAAAACTCAACATCCTCGT-AAGTAATGCGGGAACCGGT-A-T 323
Query 443 ATTCAA-GCCGACCACAGAGTATACAGCAGAAGATTTCTCTTTTGTAATGGCTACAAATC 501
| ||| |||||| || |||| ||||||| |||||| ||| ||| | |||||||||||||
Sbjct 324 AG-CAAAGCCGACTACTGAGTTTACAGCACAAGATTACTCGTTTCTGATGGCTACAAATC 382
Query 502 TCGAGTCAGCTTTCCATCTCTCACAGCTTGCCCACCCATTGTTAAAAGCCTCTGGCTCAG 561
||||||||||||| ||| ||||||||||||| || || || |||||||| || | | ||
Sbjct 383 TCGAGTCAGCTTTTCATATCTCACAGCTTGCTCATCCTTTATTAAAAGCTTCAAGTTTAG 442
Query 562 GGAGCATCGTGCTCATATCCTCTGCTGCTGGAGTCGTGCATGTCAATGTTGGATCCATCT 621
||||||||||| |||| ||||||| ||||||| | |||||| | || || ||||||||
Sbjct 443 GGAGCATCGTGTTCATGTCCTCTGTTGCTGGACTTGTGCATA-C--TGGTGCATCCATCT 499
Query 622 ATGGAGCAACCAAAGGAGCCATGAATCAGCT-GGCTAGAAACTTAGCTTGCGAATGGGCG 680
|||||||||| |||||||| ||||||||||| || ||||||||||| ||||| |||||
Sbjct 500 ATGGAGCAACAAAAGGAGCTATGAATCAGCTAGGA-AGAAACTTAGCATGCGAGTGGGCA 558
Query 681 AGCGACAACATAAGGACGAACTCTGTTTGTCCTTGG-T-ATATCACAACTCCTTTAAGTA 738
|| |||||||||||| |||||||| ||||| ||| | ||| || | |||||||| |
Sbjct 559 AGTGACAACATAAGGGTTAACTCTGTGTGTCCATGGGTCATAGCA-A-CTCCTTTA-GCC 615
Query 739 A-CGATT-TTTTC-G--ATGAAGAGTTTAAGAAAGAAGCGGTGCGTACGACACCAATGGG 793
| | ||| ||||| | ||||||||||||| |||| || || | ||| ||||||||||||
Sbjct 616 AGC-ATTATTTTCAGTGATGAAGAGTTTAAAAAAGCAGTGGAGAGTAAGACACCAATGGG 674
Query 794 GCGTGTTGGAGAAGCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTTCAGC 853
||||||||| ||||||||||||||||| ||||||| |||||||| ||| |||| ||||
Sbjct 675 ACGTGTTGGAAAAGCAAATGAAGTCTCATCGCTTGTCGCATTTCTCTGTTTTCCGGCAGC 734
Query 854 TTCTTATATTACTGGTCAGACCATTTGCGTTGACGGCGGTGCCACTGTTAACGGTTTTTC 913
||||||||| || |||||||| || || || || || |||||| | || ||||| || ||
Sbjct 735 TTCTTATATAACGGGTCAGACTATCTGTGTCGATGGAGGTGCCTCGGTGAACGGCTTCTC 794
Query 914 CTTCAAG 920
||||||
Sbjct 795 TTTCAAG 801
> Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1
Length=798
Score = 754 bits (408), Expect = 0.0
Identities = 665/788 (84%), Gaps = 21/788 (3%)
Strand=Plus/Plus
Query 140 CTTGGGAGAGAACTCAAGATGGAGTCTTGGAGGCATGACCGCTCTTGTCACTGGTGGCTC 199
|||| |||| || || |||||||| |||| |||||||||||||||||| || ||||||||
Sbjct 21 CTTGAGAGACAAATCTAGATGGAGCCTTGAAGGCATGACCGCTCTTGTTACCGGTGGCTC 80
Query 200 TAAAGGCATCGGGGAAGCTGTGGTGGAGGAACTAGCCATGTTGGGAGCAAAAGTCCACAC 259
|||||| |||| |||||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct 81 CAAAGGCCTCGGAGAAGCTGTAGTGGAGGAACTAGCCATGTTTGGAGCAAGAGTCCACAC 140
Query 260 GTGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCAAAAGGGTT 319
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 141 ATGTGCCAGAGACGAAACTCAGCTTCAAGAACGATTACGTGAATGGCAAGCAAAAGGGTT 200
Query 320 TCAGGTCACCACTTCTGTCTGCGACGTCTCTTCTCGTGACCAACGAGTGAAACTCATGGA 379
||| |||||||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 201 TCAAGTCACCACTTCTGTCTGCGATGTTTCTTCTCGTGACCAACGAGAGAAACTCATGGA 260
Query 380 AACTGTTTCCTCTCTCTACCAAGGAAAACTCAACATCCTCGTCAACAATGTGGGAACGTC 439
||| ||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 261 AACCGTTGCCTCTCTCTTCCAAGGAAAACTCAACATCCTCGTAAACAATGCGGGAACGGG 320
Query 440 AATATTCAAGCCGACCACAGAGTATACAGCAGAAGATTTCTCTTTTGTA-ATGGCTACAA 498
||| | |||||||| | ||||||||||| | |||||| ||| ||| | ||||||||||
Sbjct 321 TATACTAAAGCCGACTATAGAGTATACAGAACAAGATTACTCGTTTC-AGATGGCTACAA 379
Query 499 ATCTCGAGTCAGCTTTCCATCTCTCACAGCTTGCCCACCCATTGTTAAAAGCCTCTGGCT 558
|||||||||| ||||| ||||| |||||||| || || || || |||||||| || | |
Sbjct 380 ATCTCGAGTCCGCTTTTCATCTATCACAGCTCGCTCATCCTTTATTAAAAGCTTC-GAAT 438
Query 559 C-AGGGAGCATCGTGCTCATATCCTCTGCTGCTGGAGTCGTGCATGTCAATGTTGGATCC 617
||||||||||||| |||| ||||||| ||||||| | || ||| | || | ||||
Sbjct 439 TTAGGGAGCATCGTGTTCATGTCCTCTGTTGCTGGACTTGTACATACCG--GT-GCATCC 495
Query 618 ATCTATGGAGCAACCAAAGGAGCCATGAATCAGCT-GGCTAGAAACTTAGCTTGCGAATG 676
||||||||||||||||||||||| ||||||||||| || ||| ||||||| ||||| ||
Sbjct 496 ATCTATGGAGCAACCAAAGGAGCTATGAATCAGCTAGGA-AGAGACTTAGCATGCGAGTG 554
Query 677 GGCGAGCGACAACATAAGGACGAACTCTGTTTGTCCTTGG-T-ATATCACAACTCCTTTA 734
||| || |||||||||||| ||||| || ||||| ||| | ||| ||||||||||||
Sbjct 555 GGCAAGTGACAACATAAGGGTTAACTCGGTGTGTCCATGGGTCATA--ACAACTCCTTTA 612
Query 735 AGTAACGATTTTTTCG--ATGAAGAGTTTAAGAAA-GAAGCGGTGCG-TACGACACCAAT 790
| || | ||| || | ||||| |||| |||||| | || || | | || |||||||||
Sbjct 613 ACTAGC--TTTATTAGTGATGAAAAGTT-AAGAAAAGCAGTGGAG-GATAAGACACCAAT 668
Query 791 GGGGCGTGTTGGAGAAGCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTTC 850
||| ||||||||||||| |||||||| ||| ||||||| |||||||||||| |||| |
Sbjct 669 GGGACGTGTTGGAGAAGTGAATGAAGTATCATCGCTTGTCGCATTTCTTTGTTTTCCGGC 728
Query 851 AGCTTCTTATATTACTGGTCAGACCATTTGCGTTGACGGCGGTGCCACTGTTAACGGTTT 910
|||||||||||| ||||||||||| || ||||| ||||| |||| | | || ||||| ||
Sbjct 729 AGCTTCTTATATAACTGGTCAGACTATCTGCGTCGACGGAGGTGTCTCGGTGAACGGCTT 788
Query 911 TTCCTTCA 918
|| ||||
Sbjct 789 CTCTTTCA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5