BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29360.1
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481852 jgi|Araly1|481852|fgenesh2_kg.4__912__AT2G29360.1 1269 0.0
Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1 850 0.0
Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1 821 0.0
Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1 811 0.0
Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1 769 0.0
> Ahg481852 jgi|Araly1|481852|fgenesh2_kg.4__912__AT2G29360.1
Length=864
Score = 1269 bits (687), Expect = 0.0
Identities = 804/861 (93%), Gaps = 5/861 (1%)
Strand=Plus/Plus
Query 1 AGATCTCCAAGAAAAGATCTTTGGGTTCTGTGGTTCATAAT-CAGAAATGGCTAAGACAG 59
||||||||||||||| |||||| | ||||||||||||| | || ||||||| |||| |
Sbjct 1 AGATCTCCAAGAAAATATCTTT-AGCTCTGTGGTTCATATTCCAAAAATGGCAAAGAGA- 58
Query 60 GGGAAAGCTTGAGAGACAAACCTAGATGGAGTCTTGTAGGCATGACCGCTCTTGTCACCG 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 59 TGGAAAGCTTGAGAGACAAACCTAGATGGAGTCTTGTAGGCATGACCGCTCTTGTTACCG 118
Query 120 GTGGCTCAAAAGGCATCGGAGAAGCTGTGGTTGAGGAACTAGCTACGTTAGGGGCAAGAA 179
||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct 119 GTGGCTCCAAAGGCATCGGAGAAGCTGTGGTGGAGGAACTAGCTATGTTAGGAGCAAGAG 178
Query 180 TCCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAAAGCTTACGTAAGTGGCAAGCAA 239
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 179 TCCACACATGTGCCAGAGACGAAACTAAGCTTCAAGAAAGCTTACGTAACTGGCAAGCAA 238
Query 240 AAGGGTTTCAGGTTACCACTTCTGTCTGCGACGTTTCTTCTCGTGATAAACGAGAGAAGC 299
||||||||||||||||||||||||| | |||| |||||||||||| |||||||||| |
Sbjct 239 AAGGGTTTCAGGTTACCACTTCTGTTTCCGACATTTCTTCTCGTGGCCAACGAGAGAAAC 298
Query 300 TCATGGAAACCGTTTCCACTATCTTCGAAGGAAAACTCAACATACTTGTCAACAATGTGG 359
| |||||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||
Sbjct 299 TTATGGAAACTGTTTCCACGATCTTTGAAGGAAAACTCAATATACTTGTAAACAATGTGG 358
Query 360 GAACGTGTATAGTCAAACCGACCTTACAACATACAGCCGAAGATTTCTCATTTACAATGG 419
|||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct 359 GAACGTGTATAGCCAAACCGACCTTAAAACATACAGCGGAAGATTTCTCATTTACGATGG 418
Query 420 CAACGAATCTCGAGTCAGCTTTTCATCTCTCGCAGCTCGCGCATCCTTTGTTGAAAGCTT 479
| || |||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 419 CTACAAATCTCGAGTCAACTTTTCATCTCTCACAGCTCGCGCACCCTTTGTTGAAAGCCT 478
Query 480 CTGGTTCAGGGAGCATCGTGCTCATCTCCTCCGTATCTGGAGTTGTACATGTCAATGGTG 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 CTGGTTCAGGGAGCATCGTGCTAATCTCCTCCGTATCTGGAGTTGTACATGTCAATGGTG 538
Query 540 CATCCATATATGGAGTATCTAAAGGAGCTATGAATCAGCTAGGAAGAAACTTAGCGTGCG 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CATCCATCTATGGAGTATCTAAAGGAGCTATGAATCAGCTAGGAAGAAACTTAGCATGCG 598
Query 600 AGTGGGCAAGTGACAACATAAGGACTAACTCTGTGTGTCCATGGTTCATAGAAACTCCTT 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTGGGCAAGTGACAACATTAGGACTAACTCTGTGTGTCCATGGTTCATAGAAACTCCTT 658
Query 660 TAGTTACCGAAAGT-CTTAGTAATGAGGAGTTTAGAAAAGAAGTGGAGAGTAGACCACCA 718
||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 659 TAGTTACCGAA-GTTCTTAGTAATGAAGAGTTTAGAAAAGAAGTGGAGAGTAGGCCACCA 717
Query 719 ATGGGACGTGTTGGAGAAGTAAATGAAGTATCATCGCTTGTGGCATTTCTTTGTCTTCCT 778
|||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||
Sbjct 718 ATGGGACGTGTTGGAGAAGTGAATGAAGTCTCATCGCTTGTTGCATTTCTCTGTCTTCCT 777
Query 779 GCAGCTTCTTATATTACAGGTCAAACCATTTGTGTTGATGGAGGTTTCACTGTTAATGGT 838
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 GCAGCTTCTTATATAACAGGTCAAACCATTTGCGTTGATGGAGGTTTCACTGTTAATGGT 837
Query 839 TTCTCTTTCAAGCCTCTGCCT 859
|||||||| ||||||||||||
Sbjct 838 TTCTCTTTTAAGCCTCTGCCT 858
> Ahg497196 jgi|Araly1|497196|fgenesh2_kg.41__4__AT2G29150.1
Length=804
Score = 850 bits (460), Expect = 0.0
Identities = 704/819 (86%), Gaps = 27/819 (3%)
Strand=Plus/Plus
Query 47 ATGGCTAAGACAGGGGAAAGCTTGAGAGACAAACCTAGATGGAGTCTTGTAGGCATGACC 106
|||||||||||||| |||| ||||| ||||||| |||||||||| |||| ||||||||||
Sbjct 1 ATGGCTAAGACAGGAGAAAACTTGACAGACAAATCTAGATGGAGCCTTGGAGGCATGACC 60
Query 107 GCTCTTGTCACCGGTGGCTCAAAAGGCATCGGAGAAGCTGTGGTTGAGGAACTAGCTACG 166
|||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||| | |
Sbjct 61 GCTCTTGTGACCGGTGGCTCCAAAGGCCTCGGAGAAGCTGTGGTGGAGGAACTAGCCATG 120
Query 167 TTAGGG-GCAAGAATCCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAAAGCTTACG 225
|| ||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TT-GGGAGCAAGAGTCCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACG 179
Query 226 TAAGTGGCAAGCAAAAGGGTTTCAGGTTACCACTTCTGTCTGCGACGTTTCTTCTCGTGA 285
| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 180 TGAGTGGCAAGGAAAAGGGTTTCAGGTCACCACTTCTGTATGCGACGTTTCTTCTCGTGA 239
Query 286 TAAACGAGAGAAGCTCATGGAAACCGTTTCCACTATCTTCGAAGGAAAACTCAACATACT 345
|||||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||
Sbjct 240 CCAACGAGAGAAACTCATGGAAACCGTTTCCTCTATCTTCCAAGGAAAACTCAACATCCT 299
Query 346 TGTCAAC-AATGTGGGAAC-GTGTATAGTCAAA-CCGACCTTACA-ACAT-ACAGC-CGA 399
|| || |||| |||||| | |||||| |||| ||||| | || | | ||||| | |
Sbjct 300 CGT-AAGTAATGCGGGAACCG-GTATAG-CAAAGCCGAC-T-ACTGAGTTTACAGCAC-A 353
Query 400 AGATTTCTCATTTACA-ATGGCAACGAATCTCGAGTCAGCTTTTCATCTCTCGCAGCTCG 458
||||| ||| ||| | ||||| || ||||||||||||||||||||| |||| ||||| |
Sbjct 354 AGATTACTCGTTT-CTGATGGCTACAAATCTCGAGTCAGCTTTTCATATCTCACAGCTTG 412
Query 459 CGCATCCTTTGTTGAAAGCTTCTGGTTCAGGGAGCATCGTGCTCATCTCCTCCGTAT-CT 517
| |||||||| || |||||||| ||| ||||||||||||| |||| ||||| || | ||
Sbjct 413 CTCATCCTTTATTAAAAGCTTCAAGTTTAGGGAGCATCGTGTTCATGTCCTCTGT-TGCT 471
Query 518 GGAGTTGTACATGTCAATGGTGCATCCATATATGGAGTATCTAAAGGAGCTATGAATCAG 577
||| |||| ||| | |||||||||||| ||||||| | | ||||||||||||||||||
Sbjct 472 GGACTTGTGCATA-C--TGGTGCATCCATCTATGGAGCAACAAAAGGAGCTATGAATCAG 528
Query 578 CTAGGAAGAAACTTAGCGTGCGAGTGGGCAAGTGACAACATAAGGACTAACTCTGTGTGT 637
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 529 CTAGGAAGAAACTTAGCATGCGAGTGGGCAAGTGACAACATAAGGGTTAACTCTGTGTGT 588
Query 638 CCATGGTTCATAGAAACTCCTTTAGTTACCGAA-AGTCTT-AGTAATGAGGAGTTTAGAA 695
|||||| |||||| ||||||||||| | | | | | || ||| |||| ||||||| ||
Sbjct 589 CCATGGGTCATAGCAACTCCTTTAGCCAGC-ATTATT-TTCAGTGATGAAGAGTTTAAAA 646
Query 696 AAGAAGTGGAGAGTA-GACCACCAATGGGACGTGTTGGAGAAGTAAATGAAGTATCATCG 754
||| ||||||||||| ||| ||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 647 AAGCAGTGGAGAGTAAGAC-ACCAATGGGACGTGTTGGAAAAGCAAATGAAGTCTCATCG 705
Query 755 CTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACAGGTCAAACCATTTGTGTT 814
||||| |||||||| ||| |||| |||||||||||||| || ||||| || || |||||
Sbjct 706 CTTGTCGCATTTCTCTGTTTTCCGGCAGCTTCTTATATAACGGGTCAGACTATCTGTGTC 765
Query 815 GATGGAGGTTTCACTGTTAATGGTTTCTCTTTCAAGCCT 853
||||||||| | | || || || |||||||||||||||
Sbjct 766 GATGGAGGTGCCTCGGTGAACGGCTTCTCTTTCAAGCCT 804
> Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1
Length=1118
Score = 821 bits (444), Expect = 0.0
Identities = 719/847 (85%), Gaps = 38/847 (4%)
Strand=Plus/Plus
Query 32 GGTTCATAATC-AGAAATGGCTAA-GACAGGGGAAAGCTTGAGAGACAAAC-CTAGATGG 88
|||| |||| | || |||||| || || ||||| ||||| |||| ||| | ||||||
Sbjct 89 GGTTGATAA-CAAGGAATGGCAAAGGA-AGGGG---GCTTGGGAGA-GAACTCAAGATGG 142
Query 89 AGTCTTGTAGGCATGACCGCTCTTGTCACCGGTGGCTCAAAAGGCATCGGAGAAGCTGTG 148
||||||| |||||||| |||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 143 AGTCTTGGAGGCATGAACGCTCTTGTCACTGGTGGCTCTAAAGGCATCGGGGAAGCTGTG 202
Query 149 GTTGAGGAACTAGCTACGTTAGGG-GCAAGAATCCACACATGTGCCAGAGACGAAACTCA 207
|| ||||||||||| | || ||| |||||| ||||||||||||||||||||||||||||
Sbjct 203 GTAGAGGAACTAGCAATATT-GGGAGCAAGAGTCCACACATGTGCCAGAGACGAAACTCA 261
Query 208 GCTTCAAGAAAGCTTACGT-AAGTGGCAAGCAAAAGGGTTTCAGGTTACCACTTCTGTCT 266
|||||||||| |||||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct 262 GCTTCAAGAACGCTTACGTGAA-TGGCAAGCCAAAGGGTTTCAGGTCACCACTTCTGTCT 320
Query 267 GCGACGTTTCTTCTCGTGATAAACGAGAGAAGCTCATGGAAACCGTTTCCACTATCTTCG 326
||||||| ||||||||||| |||||| ||| ||||||||||| |||||| || ||| |
Sbjct 321 GCGACGTCTCTTCTCGTGACCAACGAGTGAAACTCATGGAAACTGTTTCCTCTCTCTACC 380
Query 327 AAGGAAAACTCAACATACTTGTCAACAATGTGGGAACGTGTATAGTCAAACCGACCTTAC 386
|||||||||||||||| || ||||||||||||||||||| ||| |||| |||||| ||
Sbjct 381 AAGGAAAACTCAACATCCTCGTCAACAATGTGGGAACGTCAATATTCAAGCCGACC--AC 438
Query 387 A-A-CATACAGCCGAAGATTTCTCATTTACAATGGCAACGAATCTCGAGTCAGCTTTTCA 444
| | ||||||| ||||||||||| ||| |||||| || ||||||||||||||||| ||
Sbjct 439 AGAGTATACAGCAGAAGATTTCTCTTTTGTAATGGCTACAAATCTCGAGTCAGCTTTCCA 498
Query 445 TCTCTCGCAGCTCGCGCATCCTTTGTTGAAAGCTTCTGGTTCAGGGAGCATCGTGCTCAT 504
|||||| ||||| ||||| || ||||||||||| || || ||||||||||||||||||||
Sbjct 499 TCTCTCACAGCTTGCGCACCCATTGTTGAAAGCCTCCGGCTCAGGGAGCATCGTGCTCAT 558
Query 505 CTCCTCCGTA-T-CTGGAGTTGTACATGTCAATGGTGCATCCATATATGGAGTATCTAAA 562
|||| | || | ||||||| || |||||||||| || |||||| ||||||| | | |||
Sbjct 559 GTCCT-C-TACTGCTGGAGTCGTGCATGTCAATGTTGGATCCATCTATGGAGCAACCAAA 616
Query 563 GGAGCTATGAATCAGCTAGG-AAGAAACTTAGCGTGCGAGTGGGCAAGTGACAACATAAG 621
||||| ||||||||||| || ||||||||||| ||||| ||||| || |||||||||||
Sbjct 617 GGAGCCATGAATCAGCT-GGCTAGAAACTTAGCTTGCGAATGGGCGAGCGACAACATAAG 675
Query 622 GACTAACTCTGTGTGTCCATGGTTCATA-GA-AACTCCTTT-AGTTACCGAAAGTCTTAG 678
|||||||||||| ||||| ||| | ||| | |||| |||| || || || | | || |
Sbjct 676 GACTAACTCTGTTTGTCCTTGG-T-ATATCACAACTTCTTTGAG-TAACG-ATTTTTTCG 731
Query 679 TAATGAGGAGTTT-AGAAAAGAAGTGGAGAGTA-GACCACCAATGGGACGTGTTGGAGAA 736
|||| |||||| || ||||||| || | ||| || |||| |||||||||||||||||
Sbjct 732 --ATGAAGAGTTTAAG-AAAGAAGCGGTGCGTAGGA-CACCGATGGGACGTGTTGGAGAG 787
Query 737 GTAAATGAAGTATCATCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACA 796
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GCAAATGAAGTCTCATCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACT 847
Query 797 GGTCAAACCATTTGTGTTGATGGAGGTTTCACTGTTAATGGT-TTCTCTTTCAAGCCTCT 855
||||| |||||||||||||| |||||| |||||| |||||| || || |||||| ||||
Sbjct 848 GGTCAGACCATTTGTGTTGACGGAGGTGCCACTGTCAATGGTCTT-TCCTTCAAGACTCT 906
Query 856 GCCTTAA 862
|||||||
Sbjct 907 GCCTTAA 913
> Ahg481835 jgi|Araly1|481835|fgenesh2_kg.4__895__AT2G29150.1
Length=798
Score = 811 bits (439), Expect = 0.0
Identities = 692/812 (85%), Gaps = 26/812 (3%)
Strand=Plus/Plus
Query 47 ATGGCTAAGACAGGGGAAAGCTTGAGAGACAAACCTAGATGGAGTCTTGTAGGCATGACC 106
|||||||||||||| |||| ||||||||||||| |||||||||| |||| ||||||||||
Sbjct 1 ATGGCTAAGACAGGAGAAAACTTGAGAGACAAATCTAGATGGAGCCTTGAAGGCATGACC 60
Query 107 GCTCTTGTCACCGGTGGCTCAAAAGGCATCGGAGAAGCTGTGGTTGAGGAACTAGCTACG 166
|||||||| ||||||||||| |||||| ||||||||||||| || ||||||||||| | |
Sbjct 61 GCTCTTGTTACCGGTGGCTCCAAAGGCCTCGGAGAAGCTGTAGTGGAGGAACTAGCCATG 120
Query 167 TTAGGGGCAAGAATCCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAAAGCTTACGT 226
|| || |||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 121 TTTGGAGCAAGAGTCCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAACGATTACGT 180
Query 227 -AAGTGGCAAGCAAAAGGGTTTCAGGTTACCACTTCTGTCTGCGACGTTTCTTCTCGTGA 285
|| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 181 GAA-TGGCAAGCAAAAGGGTTTCAAGTCACCACTTCTGTCTGCGATGTTTCTTCTCGTGA 239
Query 286 TAAACGAGAGAAGCTCATGGAAACCGTTTCCACTATCTTCGAAGGAAAACTCAACATACT 345
|||||||||| ||||||||||||||| || || ||||| |||||||||||||||| ||
Sbjct 240 CCAACGAGAGAAACTCATGGAAACCGTTGCCTCTCTCTTCCAAGGAAAACTCAACATCCT 299
Query 346 TGTCAACAATGTGGGAACGTGTATAGTCAAA-CCGACCT-TACAACATACAGC-CGAAGA 402
|| ||||||| ||||||| ||||| | ||| ||||| | || | |||||| | ||||
Sbjct 300 CGTAAACAATGCGGGAACGGGTATACT-AAAGCCGAC-TATAGAGTATACAGAAC-AAGA 356
Query 403 TTTCTCATTTACA-ATGGCAACGAATCTCGAGTCAGCTTTTCATCTCTCGCAGCTCGCGC 461
|| ||| ||| || ||||| || ||||||||||| ||||||||||| || |||||||| |
Sbjct 357 TTACTCGTTT-CAGATGGCTACAAATCTCGAGTCCGCTTTTCATCTATCACAGCTCGCTC 415
Query 462 ATCCTTTGTTGAAAGCTTCTGG-TTCAGGGAGCATCGTGCTCATCTCCTCCGTAT-CTGG 519
||||||| || |||||||| | || ||||||||||||| |||| ||||| || | ||||
Sbjct 416 ATCCTTTATTAAAAGCTTC-GAATTTAGGGAGCATCGTGTTCATGTCCTCTGT-TGCTGG 473
Query 520 AGTTGTACATGTCAATGGTGCATCCATATATGGAGTATCTAAAGGAGCTATGAATCAGCT 579
| |||||||| | ||||||||||| ||||||| | | ||||||||||||||||||||
Sbjct 474 ACTTGTACATACC---GGTGCATCCATCTATGGAGCAACCAAAGGAGCTATGAATCAGCT 530
Query 580 AGGAAGAAACTTAGCGTGCGAGTGGGCAAGTGACAACATAAGGACTAACTCTGTGTGTCC 639
||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 531 AGGAAGAGACTTAGCATGCGAGTGGGCAAGTGACAACATAAGGGTTAACTCGGTGTGTCC 590
Query 640 ATGGTTCATAGA-AACTCCTTTAGTTACCGAAAGTCTTAGTAATGAGGAGTTTAGAAAAG 698
|||| ||||| | |||||||||| || | | | | ||| |||| |||| |||||||
Sbjct 591 ATGGGTCATA-ACAACTCCTTTAACTAGCTTTA-T-T-AGTGATGAAAAGTTAAGAAAAG 646
Query 699 AAGTGGAG-AGTA-GACCACCAATGGGACGTGTTGGAGAAGTAAATGAAGTATCATCGCT 756
||||||| | || ||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 647 CAGTGGAGGA-TAAGAC-ACCAATGGGACGTGTTGGAGAAGTGAATGAAGTATCATCGCT 704
Query 757 TGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACAGGTCAAACCATTTGTGTTGA 816
||| |||||||||||| |||| |||||||||||||| || ||||| || || || || ||
Sbjct 705 TGTCGCATTTCTTTGTTTTCCGGCAGCTTCTTATATAACTGGTCAGACTATCTGCGTCGA 764
Query 817 TGGAGGTTTCACTGTTAATGGTTTCTCTTTCA 848
|||||| || | || || || ||||||||||
Sbjct 765 CGGAGGTGTCTCGGTGAACGGCTTCTCTTTCA 796
> Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1
Length=819
Score = 769 bits (416), Expect = 0.0
Identities = 684/812 (84%), Gaps = 24/812 (3%)
Strand=Plus/Plus
Query 47 ATGGCTAAGACAGGGGAAAGCTTGAGAGACAAACCTAGATGGAGTCTTGTAGGCATGACC 106
||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAAAGAGAGGGGAAAGCTTGAGAGACAAACCTAGATGGAGTCTTGAAGGCATGACT 60
Query 107 GCTCTTGTCACCGGTGGCTCAAAAGGCATCGGAGAAGCTGTGGTTGAGGAACTAGCTACG 166
|||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| | |
Sbjct 61 GCTCTTGTTACCGGTGGCTCCAAAGGCATCGGAGAAGCTGTGGTGGAGGAACTAGCCATG 120
Query 167 TTAGGGGCAAGAATCCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAAAGCTTACGT 226
|| || |||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTTGGAGCAAGAGTTCACACATGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACGT 180
Query 227 -AAGTGGCAAGCAAAAGGGTTTCAGGTTACCACTTCTGTCTGCGACGTTTCTTCTCGTGA 285
|| |||||||| |||||||| || || ||||||||||| ||||| ||||||||||||||
Sbjct 181 GAA-TGGCAAGCCAAAGGGTTACAAGTCACCACTTCTGTTTGCGATGTTTCTTCTCGTGA 239
Query 286 TAAACGAGAGAAGCTCATGGAAACCGTTTCCACTATCTTCGAAGGAAAACTCAACATACT 345
| |||| ||| ||||||||||| |||||| || ||||| |||||||||||||||| ||
Sbjct 240 CCAGCGAGTGAAACTCATGGAAACTGTTTCCTCTCTCTTCCAAGGAAAACTCAACATCCT 299
Query 346 TGTCAAC-AATGTGGGAACGTGTATAGTCAAA-CCGACCTTACA-ACA-TACAGCCGAAG 401
|| | | |||||||||||| || | || ||| |||||| ||| | |||| | ||||
Sbjct 300 CGT-ACCCAATGTGGGAACGGGTGTGGT-AAAGCCGACC--ACAGAGTGTACATCAGAAG 355
Query 402 ATTTCTCATTTACAATGGCAACGAATCTCGAGTCAGCTTTTCATCTCTCGCAGCTCGCGC 461
| ||||| |||| |||||| || ||||| |||||| |||| ||||||||||| |||||||
Sbjct 356 AGTTCTCTTTTATAATGGCTACAAATCTGGAGTCAACTTTCCATCTCTCGCAACTCGCGC 415
Query 462 ATCCTTTGTTGAAAGCTTCTGGTTCAGGGAGCATCGTGCTCATCTCCTCCG-TATCTGGA 520
| ||||| |||||||| ||||||||||||| ||| |||||||| || |||| | ||||
Sbjct 416 ACCCTTTATTGAAAGCCTCTGGTTCAGGGAACATTGTGCTCATGTCTTCCGCTG-CTGGG 474
Query 521 GTTGTACATGTCAATGGTGCATCCATATATGGAGTATCTAAAGGAGCTATGAATCAGCTA 580
|||||| || | | | |||| || ||||||| | | |||||||| |||||||||||
Sbjct 475 GTTGTAAATTTGGGTAATACATCAATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTG 534
Query 581 G-GAAGAAACTTAGCGTGCGAGTGGGCAAGTGACAACATAAGGACTAACTCTGTGTGTCC 639
| || |||| || || ||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct 535 GCGA-GAAATTTGGCATGCGAGTGGGCGAGTGATAACATAAGGGCTAACTCTGTTTGTCC 593
Query 640 ATGGTTCAT-AGAAACTCCTTTA-GTTACCGAAAGTCTTAGTAATGAGGAGTTTAGAA-A 696
||||||||| | || |||| | | || | || |||| || || | || | || || |
Sbjct 594 ATGGTTCATCACAA-CTCCATCAAGTAAA-GATTTTCTTGGTGATAAAGA-TGTAAAAGA 650
Query 697 AGAAG-TGGAGAGTA-GACCACCAATGGGACGTGTTGGAGAAGTAAATGAAGTATCATCG 754
| ||| |||||||| ||| ||| ||||| || |||||||| | ||||||||||||||||
Sbjct 651 A-AAGGTGGAGAGTGTGAC-ACCGATGGGGCGCGTTGGAGAGGCAAATGAAGTATCATCG 708
Query 755 CTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACAGGTCAAACCATTTGTGTT 814
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 709 CTTGTGGCATTTCTATGTCTTCCTGCAGCTTCTTATATTACTGGTCAAACCATTTGCGTT 768
Query 815 GATGGAGGTTTCACTGTTAATGGTTTCTCTTT 846
||||||||||||||| |||| |||||||||||
Sbjct 769 GATGGAGGTTTCACTATTAACGGTTTCTCTTT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37627319079
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5