BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29380.1 Length=1285 Score E Sequences producing significant alignments: (Bits) Value Ahg900701 jgi|Araly1|900701|Al_scaffold_0004_1351 1236 0.0 > Ahg900701 jgi|Araly1|900701|Al_scaffold_0004_1351 Length=1146 Score = 1236 bits (669), Expect = 0.0 Identities = 818/890 (92%), Gaps = 10/890 (1%) Strand=Plus/Plus Query 378 TCCAAGATACGGTGTTTCTTCGGTGTGCGGTAGAAGAAGAGAGATGGAAGATGCGGTGGC 437 ||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct 261 TCCAAGATACGGTGTATCTTCTGTTTGCGGTAGAAGAAGAGAAATGGAAGATGCGGTGGC 320 Query 438 AATTCATCCTTCATTTTCTTCTCCGAAGAATTCGGAATTTCCTCAACACTACTTTGGTGT 497 ||||||||||| |||||||||| |||||| ||||| | ||||||||||||||||||||| Sbjct 321 GATTCATCCTTCGTTTTCTTCTCGGAAGAACTCGGAGTATCCTCAACACTACTTTGGTGT 380 Query 498 GTATGACGGCCATGGTTGTTCCCACGTTGCAGCAAGGTGTAGAGAGAGGCTTCACAAGCT 557 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 GTACGACGGTCATGGTTGTTCCCACGTTGCAGCAAGGTGTAGAGAGAGGCTTCACAAGCT 440 Query 558 GGTGCAAGAAGAACTAAGTTCAGATATGGAAGATGAAGAAGAATGGAAAACGACGATGGA 617 |||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||| Sbjct 441 GGTGCAAGAAGAACTAAGCTCAGACGGGGAAGAGGAAGAAGAATGGAAAACGACTATGGA 500 Query 618 GCGTAGCTTCACACGCATGGATAAGGAAGTTGTATCGTGGGGTGATTCCGTCGTGACTGC 677 ||||||||| || |||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct 501 GCGTAGCTTTACGCGCATGGATAAGGAAGTTGTGTCGTGGGGTGAATCCGTCGTGAGTGC 560 Query 678 AAATTGCAAGTGTGATCTACAAACACCGGCTTGTGATTCCGTCGGATCAACCGCTGTTGT 737 |||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||| Sbjct 561 AAATTGCAAGTGTGATCTACAATCACCTGCTTGTGATTCCGTTGGATCAACCGCCGTTGT 620 Query 738 CTCAGTCATTACGCCAGATAAGATCGTTGTCGCCAATTGTGGCGATTCCAGAGCAGTTCT 797 ||| ||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 621 CTCGGTCATCACGCCGGATAAGATCGTTGTCGCCAATTGCGGTGATTCTAGAGCAGTTCT 680 Query 798 CTGCCGCAATGGGAAACCAGTCCCTTTATCAACCGATCACAAGCCTGATCGGCCAGACGA 857 |||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 681 CTGCCGCAATGGAAAACCGGTCCCTTTATCAACCGATCACAAGCCTGATCGTCCAGACGA 740 Query 858 ATTGGATCGAATCGAAGGAGCTGGTGGACGAGTCATATATTGGGACTGTCCAAGAGTTCT 917 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | Sbjct 741 ATTGGATCGAATCGAAGGAGCTGGTGGACGAGTCATATACTGGGACTGTCCGAGAGTTTT 800 Query 918 CGGAGTCTTAGCAATGTCACGAGCAATAGGAGACAACTATTTGAAACCTTACGTGAGTTG 977 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 801 AGGGGTCTTAGCAATGTCACGAGCAATAGGAGACAACTATTTGAAACCTTACGTGAGTTG 860 Query 978 CGAGCCGGAGGTAACCATAACGGACAGGAGAGACGATGACTGCCTCATACTAGCTAGTGA 1037 ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| || Sbjct 861 CGAGCCGGAGGTAACCATAACGGACAGGACAGACGACGACTGTCTCATACTAGCTAGCGA 920 Query 1038 TGGTTTATGGGATGTTG-TGTCAAACGAGACCGCCTGCTCTGTAGCGCGTATGTGTCTCC 1096 || ||||||||||| | ||||||||||||| |||||||| ||||||||||||||||| | Sbjct 921 CGGGTTATGGGATGT-GATGTCAAACGAGACTGCCTGCTCCGTAGCGCGTATGTGTCTTC 979 Query 1097 GTGGTGGTGGGAGAAGACAAGA---TAATGAGGATCCGGCGATTTCGGACAAGGCTTGTA 1153 ||||||| | |||| ||| || || |||||||||| |||| ||||||||||| |||| Sbjct 980 GTGGTGG-GC-AGAA-ACAGGAAGGTAGTGAGGATCCGACGATCTCGGACAAGGCATGTA 1036 Query 1154 CGGAAGCGTCAGTATTGCTAACAAAGCTGGCGTTGGCAAGGAACAGTAGTGACAACGTCA 1213 ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| Sbjct 1037 CGGAAGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAGGCACAGTAGTGACAACGTCA 1096 Query 1214 GTGTCGTTGTGATTGATCTCAGAAGATAAGGACACGT-AAGTGGACACTA 1262 ||||||| |||||||||||||||||| ||||| |||| || ||||||||| Sbjct 1097 GTGTCGTAGTGATTGATCTCAGAAGAAAAGGATACGTCAA-TGGACACTA 1145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48034875420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5