BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29380.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900701 jgi|Araly1|900701|Al_scaffold_0004_1351 1236 0.0
> Ahg900701 jgi|Araly1|900701|Al_scaffold_0004_1351
Length=1146
Score = 1236 bits (669), Expect = 0.0
Identities = 818/890 (92%), Gaps = 10/890 (1%)
Strand=Plus/Plus
Query 378 TCCAAGATACGGTGTTTCTTCGGTGTGCGGTAGAAGAAGAGAGATGGAAGATGCGGTGGC 437
||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 261 TCCAAGATACGGTGTATCTTCTGTTTGCGGTAGAAGAAGAGAAATGGAAGATGCGGTGGC 320
Query 438 AATTCATCCTTCATTTTCTTCTCCGAAGAATTCGGAATTTCCTCAACACTACTTTGGTGT 497
||||||||||| |||||||||| |||||| ||||| | |||||||||||||||||||||
Sbjct 321 GATTCATCCTTCGTTTTCTTCTCGGAAGAACTCGGAGTATCCTCAACACTACTTTGGTGT 380
Query 498 GTATGACGGCCATGGTTGTTCCCACGTTGCAGCAAGGTGTAGAGAGAGGCTTCACAAGCT 557
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GTACGACGGTCATGGTTGTTCCCACGTTGCAGCAAGGTGTAGAGAGAGGCTTCACAAGCT 440
Query 558 GGTGCAAGAAGAACTAAGTTCAGATATGGAAGATGAAGAAGAATGGAAAACGACGATGGA 617
|||||||||||||||||| ||||| |||||| |||||||||||||||||||| |||||
Sbjct 441 GGTGCAAGAAGAACTAAGCTCAGACGGGGAAGAGGAAGAAGAATGGAAAACGACTATGGA 500
Query 618 GCGTAGCTTCACACGCATGGATAAGGAAGTTGTATCGTGGGGTGATTCCGTCGTGACTGC 677
||||||||| || |||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 501 GCGTAGCTTTACGCGCATGGATAAGGAAGTTGTGTCGTGGGGTGAATCCGTCGTGAGTGC 560
Query 678 AAATTGCAAGTGTGATCTACAAACACCGGCTTGTGATTCCGTCGGATCAACCGCTGTTGT 737
|||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||
Sbjct 561 AAATTGCAAGTGTGATCTACAATCACCTGCTTGTGATTCCGTTGGATCAACCGCCGTTGT 620
Query 738 CTCAGTCATTACGCCAGATAAGATCGTTGTCGCCAATTGTGGCGATTCCAGAGCAGTTCT 797
||| ||||| ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 621 CTCGGTCATCACGCCGGATAAGATCGTTGTCGCCAATTGCGGTGATTCTAGAGCAGTTCT 680
Query 798 CTGCCGCAATGGGAAACCAGTCCCTTTATCAACCGATCACAAGCCTGATCGGCCAGACGA 857
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 681 CTGCCGCAATGGAAAACCGGTCCCTTTATCAACCGATCACAAGCCTGATCGTCCAGACGA 740
Query 858 ATTGGATCGAATCGAAGGAGCTGGTGGACGAGTCATATATTGGGACTGTCCAAGAGTTCT 917
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 741 ATTGGATCGAATCGAAGGAGCTGGTGGACGAGTCATATACTGGGACTGTCCGAGAGTTTT 800
Query 918 CGGAGTCTTAGCAATGTCACGAGCAATAGGAGACAACTATTTGAAACCTTACGTGAGTTG 977
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AGGGGTCTTAGCAATGTCACGAGCAATAGGAGACAACTATTTGAAACCTTACGTGAGTTG 860
Query 978 CGAGCCGGAGGTAACCATAACGGACAGGAGAGACGATGACTGCCTCATACTAGCTAGTGA 1037
||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||
Sbjct 861 CGAGCCGGAGGTAACCATAACGGACAGGACAGACGACGACTGTCTCATACTAGCTAGCGA 920
Query 1038 TGGTTTATGGGATGTTG-TGTCAAACGAGACCGCCTGCTCTGTAGCGCGTATGTGTCTCC 1096
|| ||||||||||| | ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 921 CGGGTTATGGGATGT-GATGTCAAACGAGACTGCCTGCTCCGTAGCGCGTATGTGTCTTC 979
Query 1097 GTGGTGGTGGGAGAAGACAAGA---TAATGAGGATCCGGCGATTTCGGACAAGGCTTGTA 1153
||||||| | |||| ||| || || |||||||||| |||| ||||||||||| ||||
Sbjct 980 GTGGTGG-GC-AGAA-ACAGGAAGGTAGTGAGGATCCGACGATCTCGGACAAGGCATGTA 1036
Query 1154 CGGAAGCGTCAGTATTGCTAACAAAGCTGGCGTTGGCAAGGAACAGTAGTGACAACGTCA 1213
||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 1037 CGGAAGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAGGCACAGTAGTGACAACGTCA 1096
Query 1214 GTGTCGTTGTGATTGATCTCAGAAGATAAGGACACGT-AAGTGGACACTA 1262
||||||| |||||||||||||||||| ||||| |||| || |||||||||
Sbjct 1097 GTGTCGTAGTGATTGATCTCAGAAGAAAAGGATACGTCAA-TGGACACTA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5