BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29390.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481856 jgi|Araly1|481856|fgenesh2_kg.4__916__AT2G29390.1 1051 0.0
Ahg919466 jgi|Araly1|919466|scaffold_100747.1 715 0.0
> Ahg481856 jgi|Araly1|481856|fgenesh2_kg.4__916__AT2G29390.1
Length=934
Score = 1051 bits (569), Expect = 0.0
Identities = 625/653 (96%), Gaps = 0/653 (0%)
Strand=Plus/Plus
Query 90 GTATCCATGGATTCTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACGCATTTCAGTGAC 149
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 GTAACCATGGATTCTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACACATTTCAGCGAC 60
Query 150 TTTCAACTGGCGTGTATTGGGAGTTTTATACTTCATGAAAGCGTGTTTTTCTTGTCTGGA 209
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTTCAACTGGCGTGCATTGGGAGTTTTATCCTTCATGAAAGCGTGTTTTTCTTGTCTGGA 120
Query 210 CTCCCTTACATTTTCCTAGAAAGGACTGGTTTTCTGAGCAACTACAAAATTCAGACCAAA 269
|||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||
Sbjct 121 CTCCCTTACATTTTCCTAGAAAGGACCGGTTTTCTCAGCAGTTACAAAATTCAGACAAAA 180
Query 270 AGTAATACTCCTGAAGCCCAGGGAAAATGCATTGCTCGACTATTACTTTACCATTGCTGC 329
| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 181 AATAATACTCCTGAAGCCCAAGGAAAATGCATTGCTCGACTATTGCTTTACCATTTCTGC 240
Query 330 GTAAACTTGCCCCTCATGATGGCGTCGTATCCTGTATTCAGATTCATGGGCATGGAAAGC 389
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||
Sbjct 241 GTAAACTTGCCCCTCATGATGGCGTCTTATCCTGTCTTCAGATTCATGGGCATGCAGAGC 300
Query 390 AGTTTTCCTCTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCATT 449
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTTTTCCTTTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCATT 360
Query 450 GAGGATTTTGTATTCTATTGGGGTCACAGGATCTTGCATACTAAATGGCTCTACAAGAAC 509
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GAGGATTTTGTATTCTATTGGGGTCACAGGATCTTGCATACTAAATGGCTGTACAAGAAC 420
Query 510 GTGCACAGTGTGCATCATGAGTACGCGACACCGTTTGGTTTGACATCAGAATATGCTCAT 569
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GTTCACAGTGTGCATCATGAGTACGCAACACCGTTTGGTTTGACATCAGAATATGCTCAC 480
Query 570 CCCGCTGAAATTCTGTTCCTTGGTTTTGCTACCATTGTTGGTCCGGCTCTCACCGGGCCT 629
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 481 CCCGCTGAGATTCTGTTCCTGGGTTTTGCTACCATTGTTGGTCCGGCTCTCACAGGGCCT 540
Query 630 CACCTGATCACCCTTTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCACAT 689
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACCTGATCACCCTCTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCACAT 600
Query 690 TGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCTATACGGCGG 742
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 TGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCTGTACGGCGG 653
Score = 209 bits (113), Expect = 3e-53
Identities = 129/137 (94%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 778 GTGCTGACTTCCATGACTACCATCATCGATTACTCTACACAAAGTCTGGCAACTACTCAT 837
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 653 GTGCTGACTTCCATGACTATCATCATCGATTACTCTACACAAAGTCTGGGAACTACTCAT 712
Query 838 CAACGTTTGTTTACATGGACTGGATCTTTGGCACCGATAAAGGTTACAGAAAACTTAAGG 897
|||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 713 CAACTTTTGTCTACATGGACTGGATCTTTGGTACCGACAAAGGTTACAGAAAACTGAAGG 772
Query 898 CCCTAAAAGAAACCTGA 914
| |||||||||||||||
Sbjct 773 CACTAAAAGAAACCTGA 789
> Ahg919466 jgi|Araly1|919466|scaffold_100747.1
Length=843
Score = 715 bits (387), Expect = 0.0
Identities = 562/647 (87%), Gaps = 10/647 (2%)
Strand=Plus/Plus
Query 92 ATCCATGGATTCTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACGCATTTCAGTGACTT 151
||| |||| ||| ||||| ||||| |||||| |||||||||| || ||||| || |||||
Sbjct 19 ATCTATGGCTTCCCTCGTCGAATCTGGTTGGCAGTACCTTGTGACACATTTTAGCGACTT 78
Query 152 TCAACTGGCGTGTATTGGGAGTTTTATACTTCATGAAAGCGTGTTTTTCTTGTCTGGACT 211
||||||||| || |||||||||||| | || ||||| |||||||||||||| ||||||||
Sbjct 79 TCAACTGGCCTGCATTGGGAGTTTTCTCCTCCATGAGAGCGTGTTTTTCTTATCTGGACT 138
Query 212 CCCTTACATTT-TCCTAGAAAGGAC-TGGTTTTCTGAGCAACTACAAAATTCAGACCAAA 269
||||| ||||| | ||||||||| | || ||||| ||||| |||||||||||||| |||
Sbjct 139 CCCTTTCATTTAT-CTAGAAAGG-CAAGGCTTTCTCAGCAAGTACAAAATTCAGACAAAA 196
Query 270 AGTAATACTCCTGAAGCCCAGGGAAAATGCATTGCTCGACTATTACTTTACCATTGCTGC 329
| || || |||| |||||| |||||||| ||| |||| || || ||||| |||| ||||
Sbjct 197 AACAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTTGCTTTATCATTTCTGC 256
Query 330 GTAAACTTGCCCCTCATGATGG-CGTCGTATCCTGTATTCAGATTCATGGGCATG-GAAA 387
|||||||||||| | ||||||| | || |||||||| |||||| |||||| ||| | ||
Sbjct 257 GTAAACTTGCCCTTGATGATGGTC-TCCTATCCTGTCTTCAGAGCCATGGGAATGCG-AA 314
Query 388 GCAGTTTTCCTCTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCA 447
||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 315 GCAGTTTTCCTCTACCGTCCTGGAAAGAAGTGTCTGCCCAGATATTATTCTACTTCATCA 374
Query 448 TTGAGGATTTTGTATTCTATTGGGGTCA-CAGGATCTTGCATACTAAATGGCTCTACAAG 506
||||||||||||| |||||||||||||| | ||||||||||| | |||||||| ||||||
Sbjct 375 TTGAGGATTTTGTCTTCTATTGGGGTCATC-GGATCTTGCATTCAAAATGGCTGTACAAG 433
Query 507 AACGTGCACAGTGTGCATCATGAGTACGCGACACCGTTTGGTTTGACATCAGAATATGCT 566
||||||||||||||||||||||| || || ||||| |||||||||||||||||||| |||
Sbjct 434 AACGTGCACAGTGTGCATCATGAATATGCCACACCATTTGGTTTGACATCAGAATACGCT 493
Query 567 CATCCCGCTGAAATTCTGTTCCTTGGTTTTGCTACCATTGTTGGTCCGGCTCTCACCGGG 626
|| |||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || ||
Sbjct 494 CACCCCGCTGAGATTCTATTCCTGGGTTTTGCTACCATAGTCGGTCCAGCTCTTACTGGC 553
Query 627 CCTCACCTGATCACCCTTTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCA 686
||||||||||| || || |||||||||||| |||| ||||| |||||||||||||||||
Sbjct 554 CCTCACCTGATTACTCTCTGGTTATGGATGGTGCTGAGAGTGCTTGAGACAGTTGAGGCA 613
Query 687 CATTGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCT 733
|||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 614 CATTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCT 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5