BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29400.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481858 jgi|Araly1|481858|fgenesh2_kg.4__918__AT2G29400.1 1784 0.0
Ahg952301 jgi|Araly1|952301|scaffold_55800001.1 399 2e-110
> Ahg481858 jgi|Araly1|481858|fgenesh2_kg.4__918__AT2G29400.1
Length=1349
Score = 1784 bits (966), Expect = 0.0
Identities = 1100/1163 (95%), Gaps = 15/1163 (1%)
Strand=Plus/Plus
Query 65 AAGCTTCACGCTTGAAAATCTCCGTTCGTTTTCTACCTCGT-TTAGATCGGAGATGGCGG 123
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 57 AAGCTTCACGCTTGAAAATCTCCGTTCGTTTTCCACCTC-TATTAGATCGGAGATGGCGG 115
Query 124 AGAAGCCGGCGCAAGAGCAAGAGCAGAAGCGAGCGATGGAACCTGCAGTTCTCGACGATA 183
||||||||||||||||||| ||||| ||||||||||||||||| | ||||| |||||||
Sbjct 116 AGAAGCCGGCGCAAGAGCAGGAGCAAAAGCGAGCGATGGAACCGGGTGTTCTGGACGATA 175
Query 184 TTATTCGTCGTTTGGTTGAGTTTCGGAACACGAGACCTGGATCGGGGAAGCAAGTTCATC 243
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 176 TCATTCGTCGTTTGGTTGAGTTTCGGAACACGAGACCTGGATCGGGGAAACAAGTTCATC 235
Query 244 TCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTCTCCAAAGAAATATTTCTTCAACAGC 303
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 236 TCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTCTCCAAAGAAATCTTTCTTCAACAAC 295
Query 304 CCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGGTGATATTCATGGGCAGTATT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGGTGATATTCATGGGCAGTATT 355
Query 364 CAGATCTATTGAGGCTTTTTGAGTATGGAGGGTTCCCTCCCGAAGCTAATTATTTGTTCT 423
|||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||
Sbjct 356 CAGATCTATTGAGGCTGTTTGAGTATGGAGGCTTTCCTCCCGAAGCCAATTATTTGTTCT 415
Query 424 TGGGTGATTATGTTGACCGTGGCAAGCAAAGCTTGGAAACAATATGTCTTCTTCTAGCTT 483
| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 416 TAGGTGACTATGTTGACCGTGGCAAGCAAAGCTTGGAAACAATATGCCTTCTCCTAGCTT 475
Query 484 ACAAAATCAAGTACCCTGAGAACTTCTTCTTGTTGAGAGGGAATCATGAATCTGCTTCCA 543
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 476 ACAAAATCAAGTACCCTGAGAACTTCTTCTTGCTGAGAGGGAATCATGAATCTGCCTCCA 535
Query 544 TTAATCGTATTTACGGTTTCTATGATGAGTGCAAACGCAGGTTCAATGTCAGACTCTGGA 603
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 536 TTAATCGTATTTACGGTTTCTATGACGAGTGCAAACGCAGGTTCAATGTCAGACTCTGGA 595
Query 604 AAATATTCACCGATTGCTTTAACTGTCTTCCTGTGGCCGCCTTAATTGATGACAGAATAC 663
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAATATTCACTGATTGCTTTAACTGTCTTCCTGTGGCCGCCTTAATTGATGACAGAATAC 655
Query 664 TATGTATGCATGGTGGGATTTCCCCAGAGCTGAAAAGTTTGGACCAGATTAGAAATATTG 723
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 656 TATGTATGCATGGTGGGATTTCCCCAGAGTTGACAAGTTTGGACCAGATTAGAAATATTG 715
Query 724 CACGGCCGATGGATATTCCGGAGTCTGGTTTGGTATGTGATTTACTATGGTCGGATCCTA 783
|||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 716 CACGTCCAATGGATATTCCAGACTCTGGTTTGGTATGTGATTTACTGTGGTCGGATCCTA 775
Query 784 GTGGAGACGT---AGGCTGGGGCATGAATGATCGTGGTGTTTCATACACTTTTGGAGCTG 840
|||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 776 GTGGAGACGTCAAAGGCTGGGGCATGAACGATCGCGGTGTTTCATACACTTTTGGAGCTG 835
Query 841 ACAAAGTCGCAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGG 900
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 836 ACAAAGTCGCAGAGTTTTTGGAAAAAAATGACATGGACCTTATCTGTCGTGCCCACCAGG 895
Query 901 TTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTATTTTCAGCTC 960
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 896 TTGTTGAAGATGGGTATGAGTTCTTTGCAGACAGACAGCTTGTTACAGTATTTTCAGCTC 955
Query 961 CCAACTATTGCGGGGAATTTGACAACGCTGGCGCAATGATGAGCATTGATGAGAGCTTAA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CCAACTATTGCGGGGAATTTGACAACGCTGGCGCAATGATGAGCATTGATGAGAGCTTAA 1015
Query 1021 TGTGCTCATTCCAGATTCTAAAGCCGTCAGAAAAGAAGTCGCCTTTTCTGTGACA-CCGA 1079
||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||| || |
Sbjct 1016 TGTGCTCATTCCAAATTCTAAAACCGTCAGAAAAGAGGTCGCCTTTTCAATGACAACC-A 1074
Query 1080 TTATCCAGTGACCACCATTGCTTCAAATTAACAATTCTAC-AAAAGTTGTA--TACTGGC 1136
||||||| |||||||||| ||||||||||||||||||| | ||||| ||| |||| ||
Sbjct 1075 TTATCCAATGACCACCAT-GCTTCAAATTAACAATTCT-CGAAAAG--GTAACTACTTGC 1130
Query 1137 AAGAGGATCTAGAGACGGAAACTGCTCAATTGGGACCTTAATGGTACTGATAA-TAGAGC 1195
|||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 1131 GAGAGGAACTAGAGACGGAAACTGCTCAATTGGGACGTTAATGGTACTGATAAATAGTGC 1190
Query 1196 ATTAGACATGTAGCTGTTGACAG 1218
|||||||||||||||||||||||
Sbjct 1191 ATTAGACATGTAGCTGTTGACAG 1213
Score = 75.0 bits (40), Expect = 1e-12
Identities = 79/95 (83%), Gaps = 14/95 (15%)
Strand=Plus/Plus
Query 1324 AATAATATTAGATTCTCATTTGTACTCTCTATTTATTTAGGA---G--AA---CCCAAAT 1375
||||||||||||||||||||||||||||||||||||||| | | || |||||||
Sbjct 1255 AATAATATTAGATTCTCATTTGTACTCTCTATTTATTTATAAAAAGTTAAAAACCCAAAT 1314
Query 1376 TCAAAACttt--tttt----AGTCTCTTCACCACC 1404
|||||||||| |||| |||||||||||||||
Sbjct 1315 TCAAAACTTTACTTTTTTTTAGTCTCTTCACCACC 1349
> Ahg952301 jgi|Araly1|952301|scaffold_55800001.1
Length=366
Score = 399 bits (216), Expect = 2e-110
Identities = 236/246 (96%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 99 ACCTCGTTTAGATCGGAGATGGCGGAGAAGCCGGCGCAAGAGCAAGAGCAGAAGCGAGCG 158
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 ACCTCTTTTAGATCGGAGATGGCGGAGAAGCCGGCGCAAGAGCAGGAGCAGAAGCGAGCG 62
Query 159 ATGGAACCTGCAGTTCTCGACGATATTATTCGTCGTTTGGTTGAGTTTCGGAACACGAGA 218
||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 63 ATGGAGCCGGGTGTTCTCGACGATATCATTCGTCGTTTGGTTGAGTTTCGGAACACGAGA 122
Query 219 CCTGGATCGGGGAAGCAAGTTCATCTCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTC 278
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CCTGGATCGGGGAAACAAGTTCATCTCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTC 182
Query 279 TCCAAAGAAATATTTCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATC 338
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 183 TCCAAAGAAATCTTTCTTCAACAACCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATC 242
Query 339 TGCGGT 344
||||||
Sbjct 243 TGCGGT 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5