BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29410.1
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344701 jgi|Araly1|344701|fgenesh1_pg.C_scaffold_4001043 1903 0.0
Ahg497468 jgi|Araly1|497468|fgenesh2_kg.558__2__AT2G29410.1 1472 0.0
> Ahg344701 jgi|Araly1|344701|fgenesh1_pg.C_scaffold_4001043
Length=1194
Score = 1903 bits (1030), Expect = 0.0
Identities = 1146/1201 (95%), Gaps = 12/1201 (1%)
Strand=Plus/Plus
Query 45 AAAACTCAAGATTTCTGAAGAGGACAGCTCTGGAATTCATATACGTTTTGCCTCTCCATC 104
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 6 AAAATTCAAGATTTCTGAAGAAGACAGTTCTGGAATTCATATACGTTTTGCCTCTCCATC 65
Query 105 TGATTCTCAGCTTATGGAATTGGAGCAAATCTGCATTTTGAAACCCGATGATGAGGAAGA 164
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 66 TGATTCTCAGCTTATGGAATTGGAGCAAATCCGCATTTTGAAACCCGATGATGACGAAGA 125
Query 165 AATGGAGTCACCATCACCATCGAAAACAGAGGAAAATTTAGGCGTGGTTCCTCTGTCTTG 224
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 126 AATGGAGTCACCATCACCATCAAAAACAGAGGAAATTTTAGGCGTGGTTCCTCTGTCTTG 185
Query 225 CGCGTTTACGAGACAAGAACATTGCGTTTCCGAGACGAAAGAACGCGAAGAATCGACTAG 284
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 186 CGCTTTTACGAGACAAGAACATTGCGTTTCCGAGACGAAAGAACGCGAAGAATCGATTAG 245
Query 285 AAGACTAAGCAGCCTTATTTTTCTTTACCTCATCGTTATGTCCGTACAGATTGTGGGAGG 344
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 246 AAGACTAAGCAGCCTTATCTTTCTTTACCTGATTGTTATGTCTGTACAGATTGTGGGAGG 305
Query 345 TTTTAAGGCGAATAGTCTTGCGGTTATGACAGATGCTGCGCATTTGTTGTCGGATGTGGC 404
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 306 TTTTAAGGCAAATAGTCTTGCGGTTATGACGGATGCTGCGCATTTGTTGTCGGATGTGGC 365
Query 405 GGGTTTGTGTGTCTCTTTGTTGGCGATCAAGGTCTCGAGCTGGGAAGCTAATCCGCGAAA 464
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 366 GGGTTTGTGTGTCTCTTTGTTGGCTATCAAGGTCTCGAGCTGGGAAGCTAATCCGAGAAA 425
Query 465 CTCGTTCGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTTCAGCTCATATG 524
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 426 CTCGTTTGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTTCAGCTTATATG 485
Query 525 GCTTGTCTCTGGAGTGATAATCCATGAAGCCATTCAAAGACTACTTAGCAGAAGCAGAGA 584
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 486 GCTTGTCTCTGGAGTTATAATCCATGAAGCCATTCAAAGACTAGTTAGCAGAAGCAGAGA 545
Query 585 GGTTAATGGAGAAATCATGTTTGGGATTTCGGCTTTCGGGTTTTTCATGAACTTGGTTAT 644
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 546 GGTTAATGGTGAAATCATGTTTGGGATTTCGGCTTTCGGATTTTTCATGAACTTGGTTAT 605
Query 645 GGTCCTTTGGTTAGGAcataaccatagccaccaccaccacgaccatcatcaccatcatca 704
|||||||||||||||||||||||||||||||||||| | | |||| | ||||| ||||
Sbjct 606 GGTCCTTTGGTTAGGACATAACCATAGCCACCACCA-C-C-ACCA-C--CACCACCATC- 658
Query 705 taatcataaacatcaacatcaacatcatcaCAAGGAGGTGGTGGCAGAAGAGGAGGAGGA 764
|| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 659 -AA-CAT---CATCATCATCAACATCATCACAAGGAGGTGGTGGCTGAAGAGGAGGATGA 713
Query 765 GGAAATGAATCCTTTAAAAGGTGAGAAATCGTCTTCAAAGGAGATGAACATTAACATACA 824
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 714 GGAAATGAATCCTTTAAAAGGTGAGAAATCATCGTCAAAGGAGATGAACATTAACATACA 773
Query 825 AGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTAGGTGTTATGATTGGTGG 884
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 774 AGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTTGGTGTTATGATCGGTGG 833
Query 885 AGGTATCATTTGGGTAAAACCAAAATGGGTTTTGGTTGATTTGATTTGCACTCTTGTTTT 944
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 834 AGGTATCATTTGGGTGAAACCGAAATGGGTTTTGGTTGATTTGATTTGTACTCTTGTTTT 893
Query 945 CTCTGCTTTTGCTCTTGCTGCTACTCTACCAATTCTCAAGAACATATTTGGAATACTGAT 1004
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 894 CTCTGCTTTTGCTCTTGCTGCTACTTTACCAATGCTCAAGAACATATTTGGAATACTGAT 953
Query 1005 GGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTTAAGCGAATCGA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTTAAGCGAATCGA 1013
Query 1065 TGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTAGGGAGAATCGTATT 1124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1014 TGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTTGGGAGAATCGTATT 1073
Query 1125 GTCCTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATTACTGGTGTTAG 1184
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1074 ATCGTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATTATTGGTGTTAG 1133
Query 1185 AAATTTCTGTAGGAAGTCTTATGGGATTTATCATGCAACTGTTCAGGTTGAATCAGAGTA 1244
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1134 AAATTTCTGTAGGAAATCTTGTGGGATTTATCATGTAACTGTTCAGGTTGAATCAGAGTA 1193
Query 1245 G 1245
|
Sbjct 1194 G 1194
> Ahg497468 jgi|Araly1|497468|fgenesh2_kg.558__2__AT2G29410.1
Length=1198
Score = 1472 bits (797), Expect = 0.0
Identities = 910/962 (95%), Gaps = 17/962 (2%)
Strand=Plus/Plus
Query 334 ATTGTGGGAGGTTTTAAGGCGAATAGTCTTGCGGTTATGACAGATGCTGCGCATTTGTTG 393
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 251 ATTGTGGGAGGTTTTAAGGCAAATAGTCTTGCGGTTATGACGGATGCTGCGCATTTGTTG 310
Query 394 TCGGATGTGGCGGGTTTGTGTGTCTCTTTGTTGGCGATCAAGGTCTCGAGCTGGGAAGCT 453
||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||
Sbjct 311 TCGGATGTGGCGGGTATGGGTGTCTCTTTGTTGGCTATCAAGGTCTCGAGCTGGGAAGCT 370
Query 454 AATCCGCGAAACTCGTTCGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTT 513
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AATCCGAGAAACTCGTTTGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTT 430
Query 514 CAGCTCATATGGCTTGTCTCTGGAGTGATAATCCATGAAGCCATTCAAAGACTACTTAGC 573
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 431 CAGCTTATATGGCTTGTCTCTGGAGTTATAATCCATGAAGCCATTCAAAGACTAGTTAGC 490
Query 574 AGAAGCAGAGAGGTTAATGGAGAAATCATGTTTGGGATTTCGGCTTTCGGGTTTTTCATG 633
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 491 AGAAGCAGAGAGGTTAATGGTGAAATCATGTTTGGGATTTCGGCTTTCGGATTTTTCATG 550
Query 634 AACTTGGTTATGGTCCTTTGGTTAGGAcataaccatagccaccaccaccacgaccatcat 693
||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |
Sbjct 551 AACTTGGTTATGGTCCTTTGGTTAGGACATAACCATAGCCACCACCA-C-C-ACCA-C-- 604
Query 694 caccatcatcataatcataaacatcaacatcaacatcatcaCAAGGAGGTGGTGGCAGAA 753
||||| |||| || ||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 605 CACCACCATC--AA-CAT---CATCATCATCAACATCATCACAAGGAGGTGGTGGCTGAA 658
Query 754 GAGGAGGAGGAGGAAATGAATCCTTTAAAAGGTGAGAAATCGTCTTCAAAGGAGATGAAC 813
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 659 GAGGAGGATGAGGAAATGAATCCTTTAAAAGGTGAGAAATCATCGTCAAAGGAGATGAAC 718
Query 814 ATTAACATACAAGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTAGGTGTT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 ATTAACATACAAGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTTGGTGTT 778
Query 874 ATGATTGGTGGAGGTATCATTTGGGTAAAACCAAAATGGGTTTTGGTTGATTTGATTTGC 933
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 779 ATGATCGGTGGAGGTATCATTTGGGTGAAACCGAAATGGGTTTTGGTTGATTTGATTTGT 838
Query 934 ACTCTTGTTTTCTCTGCTTTTGCTCTTGCTGCTACTCTACCAATTCTCAAGAACATATTT 993
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 839 ACTCTTGTTTTCTCTGCTTTTGCTCTTGCTGCTACTTTACCAATGCTCAAGAACATATTT 898
Query 994 GGAATACTGATGGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGAATACTGATGGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTT 958
Query 1054 AAGCGAATCGATGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTAGGG 1113
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 959 AAGCGTATCGATGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTTGGG 1018
Query 1114 AGAATCGTATTGTCCTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATT 1173
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGAATCGTATTATCGTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATT 1078
Query 1174 ACTGGTGTTAGAAATTTCTGTAGGAAGTCTTATGGGATTTATCATGCAACTGTTCAGGTT 1233
| |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 1079 ATTGGTGTTAGAAATTTCTGTAGGAAATCTTGTGGGATTTATCATGTAACTGTTCAGGTT 1138
Query 1234 GAATCAGAGTAGC-ACAAA--AGAGAGTTTCTTCTGTATTATTTGCTTAAGAACATCTTT 1290
||||||||||||| | ||| |||||||||||| |||||| || ||||||||||||||||
Sbjct 1139 GAATCAGAGTAGCTA-AAAGCAGAGAGTTTCTTTTGTATTGTT-GCTTAAGAACATCTTT 1196
Query 1291 AG 1292
||
Sbjct 1197 AG 1198
Score = 405 bits (219), Expect = 4e-112
Identities = 240/250 (96%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 1 CTTAATTGCCTGTGTTCATGTCTTCATATCTCTAACCATAAGATAAAACTCAAGATTTCT 60
|||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 1 CTTAATTGCCTGTGTTCATGTCTTTATATCTCTAACCATAACATAAAATTCAAGATTTCT 60
Query 61 GAAGAGGACAGCTCTGGAATTCATATACGTTTTGCCTCTCCATCTGATTCTCAGCTTATG 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGAAGACAGTTCTGGAATTCATATACGTTTTGCCTCTCCATCTGATTCTCAGCTTATG 120
Query 121 GAATTGGAGCAAATCTGCATTTTGAAACCCGATGATGAGGAAGAAATGGAGTCACCATCA 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GAATTGGAGCAAATCTGCATTTTGAAACCCGATGATGACGAAGAAATGGAGTCACCATCA 180
Query 181 CCATCGAAA-ACAGAGGAAAATTTAGGCGTGGTTCCTCTGTCTTGCGCGTTTACGAGACA 239
||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATCAAAAGACAGAGGAAATTTTAGGCGTGGTTCCTCTGTCTTGCGCGTTTACGAGACA 240
Query 240 AGAACATTGC 249
|||||| |||
Sbjct 241 AGAACAATGC 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48416104590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5