BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29440.1
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1 1140 0.0
Ahg481861 jgi|Araly1|481861|fgenesh2_kg.4__921__AT2G29450.1 658 0.0
> Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1
Length=737
Score = 1140 bits (617), Expect = 0.0
Identities = 682/713 (96%), Gaps = 6/713 (1%)
Strand=Plus/Plus
Query 19 AGAAGAAGCAGAAAGAAAGAAGATCTAACTAATGGGCAAAAATGAGGAAGTGAAGCTTTT 78
|||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAAGAAGAAAAAAAGAAGA--T--CTAATGGGCAAAAATGAGGAAGTGAAGCTTTT 56
Query 79 GGGAATATGGGCGAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCAAACTCAAAGGTGT 138
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 57 AGGAACATGGGCAAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCAAACTCAAAGGCGT 116
Query 139 ACCGTACGAATACTTGGAGGAAGATTTGGAGAACAAGAGCTCTTTGCTTCTTGCTCTAAG 198
||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 117 ACCGTACGAATACTTGGAGGAAGATCTGGACAATAAGAGCTCTTTGCTTCTTGCTCTAAG 176
Query 199 CCCTATTCACAAGAAGATCCCTGTTCTTGTTCATAATGGTAAAACCATTATCGAGTCGCA 258
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 177 CCCTATTCACAAGAAGATCCCTGTTCTTGTTCACAATGGTAAAACCATTATCGAGTCGCA 236
Query 259 TGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCATTCTTCCTCAGGATCC 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCATTCTTCCTCAGGATCC 296
Query 319 CTTCCAAAGATCCAAGGCTCGAGTCTTAGCTAAACTTGTTGATGAAAAGATAGTAAATGT 378
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 297 TTTCCAAAGATCCAAGGCTCGAGTCTTAGCAAAACTCGTTGATGAACAGATAGTAAATGT 356
Query 379 -GGGATTTGCCTCACTGGCCAAAACAGAGAAAGGAAGAGAAGTTCTGATTGAGCAGACAA 437
||| |||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||
Sbjct 357 CGGG-TTTGCCTCACTGGCTAAAACAGAGAAAGGAAGAGAGGTTTTGATCGAGCAGACAA 415
Query 438 GAGAATTGATTATGTGTCTCGAAAAAGAACTCGCCGGAAAAGATTACTTCGGCGGCAAGA 497
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 416 GAGAATTGATTATGAGTCTCGAAAAAGAACTCGCCGGAAAAGATTACTTCGGGGGCAAGA 475
Query 498 CAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATCCCGTTTTGTTTGGAGAGGGCTT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATCCCGTTTTGTTTGGAGAGGGCTT 535
Query 558 GGGAAGGAATGGGAGTGGAGATGATTACAGAGAAAAAGTTTCCAGAATATAACAAATGGG 617
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 536 GGGAAGGAATGGGAGTGGAGATGATTACAGAGAAAAAGTTTCCAGAATACAACAAATGGG 595
Query 618 TGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGATTGTATTCCTCTAAGAGAGAAACATA 677
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 596 TGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGATTGTATTCCTCCAAGAGAGAAACATA 655
Query 678 TTGAACACATGAACAATATGGCAGAGAAAATTAGATCTGCTTAATTCAGAAGA 730
||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 656 TTGAACACATGAACAATATGGCAGAGAAAATCAGATCCGCTTAATTAAGAAGA 708
> Ahg481861 jgi|Araly1|481861|fgenesh2_kg.4__921__AT2G29450.1
Length=873
Score = 658 bits (356), Expect = 0.0
Identities = 570/671 (85%), Gaps = 23/671 (3%)
Strand=Plus/Plus
Query 66 AAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCA 125
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 18 AAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTTAGCCGTCGGGTCGAGATGGCTCTCA 77
Query 126 AACTCAAAGGTGTACCGTACGAATACTTGGAGGAAGAT-TTGGAGAACAAGAGCTCTTTG 184
|||||||||| |||||||||| ||| |||| ||| || ||||||||||| ||| |||||
Sbjct 78 AACTCAAAGGCATACCGTACGATTACGTGGAAGAA-ATATTGGAGAACAAAAGCCCTTTG 136
Query 185 CTTCTTGCTCT-AAGCCCTATTCACAAGAA-GATCCCTGTTCTTGTTCATAATGGTAAAA 242
||||||||||| || ||||||||||||||| | ||||||||||||| || ||||||||||
Sbjct 137 CTTCTTGCTCTTAA-CCCTATTCACAAGAAAG-TCCCTGTTCTTGTCCACAATGGTAAAA 194
Query 243 CCATTATCGAGTCGCATGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCA 302
||||| | ||||| |||||||| || ||||||||||||||||||||| ||||||||| |
Sbjct 195 CCATTCTTGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACACAATCCAA 254
Query 303 TTCTTCCTCAGGATCCCTTCCAA-AGATCCAAGGCTCGAGTCTTAGCTAAACTTGTTGAT 361
|||| ||||| ||||| || | | |||||||| |||||| |||| || ||||| || |||
Sbjct 255 TTCTCCCTCAAGATCC-TTACGAGAGATCCAAAGCTCGATTCTTTGCAAAACTCGTCGAT 313
Query 362 GAAAAGAT-AGTAAATGTGGGATTTGCCTCACTGGCCAAAA-CAGA-GA-AA-GGAAGAG 416
||| |||| | | |||||||| |||| ||| |||| || | |||| || || |||||||
Sbjct 314 GAACAGATTA-TGAATGTGGGGTTTGTATCAATGGC-AAGAGCAGACGAGAAAGGAAGAG 371
Query 417 AAGTTCT-GATTGAGCAGACAAGAGAATTGATTATGTGTCTCGAAAAAGAACTCGCCGGA 475
||||| | | |||||| |||||||| | || |||| ||| || |||||||| | ||||
Sbjct 372 AAGTTTTAGCC-GAGCAGGCAAGAGAACTAATCATGTATCTTGAGAAAGAACTTGTCGGA 430
Query 476 AAAGATTACTTCGGCGGCAAGACAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATC 535
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 431 AAAGATTACTTCGGTGGCAAGACTGTCGGATTCTTGGACTTTGTGGCCGGAAGTTTGATT 490
Query 536 CCGTTTTGTTTGGAGAG-GGCTTGGGAAGGAATGGGAGTGGA-GATGATTACAGAGAAAA 593
||||||||||||||||| || |||||||||||| ||| |||| | ||||||||||| | |
Sbjct 491 CCGTTTTGTTTGGAGAGAGG-TTGGGAAGGAATAGGATTGGAAG-TGATTACAGAGGAGA 548
Query 594 AGTTTCCAGAATAT-AACAAATGGGTGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGAT 652
|||||||||||| | || | |||||| ||||| || || |||||||||| ||| |||
Sbjct 549 AGTTTCCAGAAT-TCAAGAGATGGGTTAAGAATTTGGAGAAGGTTGAGATTGTTAAAGAT 607
Query 653 TGTATTCCTCTAAGAGAGAAACATATTGAACACATGAACAATATGGCAGAGAAAATTAGA 712
||| |||| | ||||||||||||| | |||||||||||| |||||||||||| | | |||
Sbjct 608 TGTGTTCCACCAAGAGAGAAACATGTAGAACACATGAACTATATGGCAGAGAGAGTGAGA 667
Query 713 TCTGCTTAATT 723
||| |||||||
Sbjct 668 TCTTCTTAATT 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30307719015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5