BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29440.1 Length=820 Score E Sequences producing significant alignments: (Bits) Value Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1 1140 0.0 Ahg481861 jgi|Araly1|481861|fgenesh2_kg.4__921__AT2G29450.1 658 0.0 > Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1 Length=737 Score = 1140 bits (617), Expect = 0.0 Identities = 682/713 (96%), Gaps = 6/713 (1%) Strand=Plus/Plus Query 19 AGAAGAAGCAGAAAGAAAGAAGATCTAACTAATGGGCAAAAATGAGGAAGTGAAGCTTTT 78 |||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||| Sbjct 1 AGAAGAAGAAGAAAAAAAGAAGA--T--CTAATGGGCAAAAATGAGGAAGTGAAGCTTTT 56 Query 79 GGGAATATGGGCGAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCAAACTCAAAGGTGT 138 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 57 AGGAACATGGGCAAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCAAACTCAAAGGCGT 116 Query 139 ACCGTACGAATACTTGGAGGAAGATTTGGAGAACAAGAGCTCTTTGCTTCTTGCTCTAAG 198 ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| Sbjct 117 ACCGTACGAATACTTGGAGGAAGATCTGGACAATAAGAGCTCTTTGCTTCTTGCTCTAAG 176 Query 199 CCCTATTCACAAGAAGATCCCTGTTCTTGTTCATAATGGTAAAACCATTATCGAGTCGCA 258 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 177 CCCTATTCACAAGAAGATCCCTGTTCTTGTTCACAATGGTAAAACCATTATCGAGTCGCA 236 Query 259 TGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCATTCTTCCTCAGGATCC 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCATTCTTCCTCAGGATCC 296 Query 319 CTTCCAAAGATCCAAGGCTCGAGTCTTAGCTAAACTTGTTGATGAAAAGATAGTAAATGT 378 ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| Sbjct 297 TTTCCAAAGATCCAAGGCTCGAGTCTTAGCAAAACTCGTTGATGAACAGATAGTAAATGT 356 Query 379 -GGGATTTGCCTCACTGGCCAAAACAGAGAAAGGAAGAGAAGTTCTGATTGAGCAGACAA 437 ||| |||||||||||||| |||||||||||||||||||| ||| |||| |||||||||| Sbjct 357 CGGG-TTTGCCTCACTGGCTAAAACAGAGAAAGGAAGAGAGGTTTTGATCGAGCAGACAA 415 Query 438 GAGAATTGATTATGTGTCTCGAAAAAGAACTCGCCGGAAAAGATTACTTCGGCGGCAAGA 497 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 416 GAGAATTGATTATGAGTCTCGAAAAAGAACTCGCCGGAAAAGATTACTTCGGGGGCAAGA 475 Query 498 CAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATCCCGTTTTGTTTGGAGAGGGCTT 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 CAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATCCCGTTTTGTTTGGAGAGGGCTT 535 Query 558 GGGAAGGAATGGGAGTGGAGATGATTACAGAGAAAAAGTTTCCAGAATATAACAAATGGG 617 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 536 GGGAAGGAATGGGAGTGGAGATGATTACAGAGAAAAAGTTTCCAGAATACAACAAATGGG 595 Query 618 TGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGATTGTATTCCTCTAAGAGAGAAACATA 677 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 596 TGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGATTGTATTCCTCCAAGAGAGAAACATA 655 Query 678 TTGAACACATGAACAATATGGCAGAGAAAATTAGATCTGCTTAATTCAGAAGA 730 ||||||||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 656 TTGAACACATGAACAATATGGCAGAGAAAATCAGATCCGCTTAATTAAGAAGA 708 > Ahg481861 jgi|Araly1|481861|fgenesh2_kg.4__921__AT2G29450.1 Length=873 Score = 658 bits (356), Expect = 0.0 Identities = 570/671 (85%), Gaps = 23/671 (3%) Strand=Plus/Plus Query 66 AAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCA 125 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 18 AAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTTAGCCGTCGGGTCGAGATGGCTCTCA 77 Query 126 AACTCAAAGGTGTACCGTACGAATACTTGGAGGAAGAT-TTGGAGAACAAGAGCTCTTTG 184 |||||||||| |||||||||| ||| |||| ||| || ||||||||||| ||| ||||| Sbjct 78 AACTCAAAGGCATACCGTACGATTACGTGGAAGAA-ATATTGGAGAACAAAAGCCCTTTG 136 Query 185 CTTCTTGCTCT-AAGCCCTATTCACAAGAA-GATCCCTGTTCTTGTTCATAATGGTAAAA 242 ||||||||||| || ||||||||||||||| | ||||||||||||| || |||||||||| Sbjct 137 CTTCTTGCTCTTAA-CCCTATTCACAAGAAAG-TCCCTGTTCTTGTCCACAATGGTAAAA 194 Query 243 CCATTATCGAGTCGCATGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCA 302 ||||| | ||||| |||||||| || ||||||||||||||||||||| ||||||||| | Sbjct 195 CCATTCTTGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACACAATCCAA 254 Query 303 TTCTTCCTCAGGATCCCTTCCAA-AGATCCAAGGCTCGAGTCTTAGCTAAACTTGTTGAT 361 |||| ||||| ||||| || | | |||||||| |||||| |||| || ||||| || ||| Sbjct 255 TTCTCCCTCAAGATCC-TTACGAGAGATCCAAAGCTCGATTCTTTGCAAAACTCGTCGAT 313 Query 362 GAAAAGAT-AGTAAATGTGGGATTTGCCTCACTGGCCAAAA-CAGA-GA-AA-GGAAGAG 416 ||| |||| | | |||||||| |||| ||| |||| || | |||| || || ||||||| Sbjct 314 GAACAGATTA-TGAATGTGGGGTTTGTATCAATGGC-AAGAGCAGACGAGAAAGGAAGAG 371 Query 417 AAGTTCT-GATTGAGCAGACAAGAGAATTGATTATGTGTCTCGAAAAAGAACTCGCCGGA 475 ||||| | | |||||| |||||||| | || |||| ||| || |||||||| | |||| Sbjct 372 AAGTTTTAGCC-GAGCAGGCAAGAGAACTAATCATGTATCTTGAGAAAGAACTTGTCGGA 430 Query 476 AAAGATTACTTCGGCGGCAAGACAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATC 535 |||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||| Sbjct 431 AAAGATTACTTCGGTGGCAAGACTGTCGGATTCTTGGACTTTGTGGCCGGAAGTTTGATT 490 Query 536 CCGTTTTGTTTGGAGAG-GGCTTGGGAAGGAATGGGAGTGGA-GATGATTACAGAGAAAA 593 ||||||||||||||||| || |||||||||||| ||| |||| | ||||||||||| | | Sbjct 491 CCGTTTTGTTTGGAGAGAGG-TTGGGAAGGAATAGGATTGGAAG-TGATTACAGAGGAGA 548 Query 594 AGTTTCCAGAATAT-AACAAATGGGTGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGAT 652 |||||||||||| | || | |||||| ||||| || || |||||||||| ||| ||| Sbjct 549 AGTTTCCAGAAT-TCAAGAGATGGGTTAAGAATTTGGAGAAGGTTGAGATTGTTAAAGAT 607 Query 653 TGTATTCCTCTAAGAGAGAAACATATTGAACACATGAACAATATGGCAGAGAAAATTAGA 712 ||| |||| | ||||||||||||| | |||||||||||| |||||||||||| | | ||| Sbjct 608 TGTGTTCCACCAAGAGAGAAACATGTAGAACACATGAACTATATGGCAGAGAGAGTGAGA 667 Query 713 TCTGCTTAATT 723 ||| ||||||| Sbjct 668 TCTTCTTAATT 678 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30307719015 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5