BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29450.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481861 jgi|Araly1|481861|fgenesh2_kg.4__921__AT2G29450.1 1295 0.0
Ahg320713 jgi|Araly1|320713|fgenesh1_pm.C_scaffold_4000770 732 0.0
Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1 636 0.0
> Ahg481861 jgi|Araly1|481861|fgenesh2_kg.4__921__AT2G29450.1
Length=873
Score = 1295 bits (701), Expect = 0.0
Identities = 818/872 (94%), Gaps = 18/872 (2%)
Strand=Plus/Plus
Query 71 aatggctgagaaagaagaagtgaagCTTTTGGGGATATGGGCGAGCCCTTTTAGCCGTCG 130
|||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AATGGCGGAGAAAGACCAAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTTAGCCGTCG 60
Query 131 GGTCGAGATGGCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAGAGATACTGGA 190
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 61 GGTCGAGATGGCTCTCAAACTCAAAGGCATACCGTACGATTACGTGGAAGAAATATTGGA 120
Query 191 GAACAAAAGCCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGT 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAACAAAAGCCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGT 180
Query 251 CCACAATGGTAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTG 310
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACAATGGTAAAACCATTCTTGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTG 240
Query 311 GCCACAAAATCCAATTCTCCCTCAAGATCCTTATGAAAGATCCAAAGCTCGTTTCTTTGC 370
|||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 241 GCCACACAATCCAATTCTCCCTCAAGATCCTTACGAGAGATCCAAAGCTCGATTCTTTGC 300
Query 371 TAAACTCGTCGATGAACAGATTATGAACGTGGGGTTTATATCAATGGCAAGAGCAGACGA 430
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 301 AAAACTCGTCGATGAACAGATTATGAATGTGGGGTTTGTATCAATGGCAAGAGCAGACGA 360
Query 431 GAAAGGAAGAGAAGTTTTAGCCGAGCAGGTAAGAGAACTGATTATGTATCTCGAGAAAGA 490
||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||
Sbjct 361 GAAAGGAAGAGAAGTTTTAGCCGAGCAGGCAAGAGAACTAATCATGTATCTTGAGAAAGA 420
Query 491 ACTTGTCGGAAAAGATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGG 550
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 421 ACTTGTCGGAAAAGATTACTTCGGTGGCAAGACTGTCGGATTCTTGGACTTTGTGGCCGG 480
Query 551 AAGTTTAATTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTAC 610
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGTTTGATTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTAC 540
Query 611 AGAGGAGAAGTTTCCAGAGTTCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTGT 670
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 AGAGGAGAAGTTTCCAGAATTCAAGAGATGGGTTAAGAATTTGGAGAAGGTTGAGATTGT 600
Query 671 TAAAGATTGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGAG 730
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 TAAAGATTGTGTTCCACCAAGAGAGAAACATGTAGAACACATGAACTATATGGCAGAGAG 660
Query 731 AGTGAGATCTTCTTAAG-AA--AA--CAA-A--TCATGTTTAGTTCTTGATCATGCAatg 782
|||||||||||||||| || || ||| | |||||||||||||||||||||||||||
Sbjct 661 AGTGAGATCTTCTTAATTAATTAAGACAACAAATCATGTTTAGTTCTTGATCATGCAATG 720
Query 783 tttgtatggttatgttgttgtttattttattgaata----t--ctttgtatgttgtgtgg 836
||||||| ||| |||||||||||||| || |||||| | |||| ||||||||||||
Sbjct 721 TTTGTATAGTTTTGTTGTTGTTTATTCTAATGAATAAGGATTTCTTTTTATGTTGTGTGG 780
Query 837 ttgAGA-AGTGAGGTTTTATCATCATCTCTCACGTTATCTTATTTGGTCCC-A-GC-CAC 892
|||||| ||||||| ||||||||||| |||||||||||||||||||||||| | | |||
Sbjct 781 TTGAGAGAGTGAGGATTTATCATCATTTCTCACGTTATCTTATTTGGTCCCCACGGTCAC 840
Query 893 TATTTAGAATTAATGGTAAAGCTTTGGCTATT 924
| | ||||||||||||||||||||||||||||
Sbjct 841 TCTCTAGAATTAATGGTAAAGCTTTGGCTATT 872
> Ahg320713 jgi|Araly1|320713|fgenesh1_pm.C_scaffold_4000770
Length=648
Score = 732 bits (396), Expect = 0.0
Identities = 539/606 (89%), Gaps = 18/606 (3%)
Strand=Plus/Plus
Query 141 GCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAGAGATA-CTGGAGAACAAAAG 199
||||||||||||||||||||| ||||| ||||||||||| | | | |||| ||||||
Sbjct 52 GCTCTCAAACTCAAAGGCATAAATTACGATTACGTGGAAGA-AAAGTTTGAGAGCAAAAG 110
Query 200 CCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGTCCACAATGG 259
| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 111 CTCTTTGCTTCTTGCTCTAAACCCTATTCACAAGAAGGTCCCTGTTCTTGTTCACAATGG 170
Query 260 TAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACAAAA 319
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 171 TAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGACGAGACTTGGCCACACAA 230
Query 320 TCCAATTCTCCCTCAAGATCCTTATGAAAGATCCAAAGCTCGTTTCTTTGCTAAACTCGT 379
||| |||||||||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 231 TCCCATTCTCCCTCAAGATCCTTACGAGAGATCCAAAGCTCGATTCTTTGCAAAACTCGT 290
Query 380 CGATGAACAGATTATGAACGTGGGGTTTATATCAATGGCAAGAGCAGACGAGAAAGGAAG 439
|||||||||||||| ||| ||||| ||| |||||||||||| ||| || |||||||||||
Sbjct 291 CGATGAACAGATTACGAATGTGGGTTTTGTATCAATGGCAAAAGCGGATGAGAAAGGAAG 350
Query 440 AGAAGTTTTAGCCGAGCAGGTAAGAGAACTGATTATGTATCTCGAGAAAGAACTTGTCGG 499
||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 351 AGAAGTTTTGGTCGAGCAGATAAGAGAACTAATTATGTATCTCGAGAAAGAACTTGTCG- 409
Query 500 AAAA-GATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGGAAGTTTAA 558
|||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
Sbjct 410 AAAATGATTACTTCGGCGGTAAGACTGTCGGATTCTTGGACTTTGTGGCCGGAAGTTTGA 469
Query 559 TTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTACAGAGGAGA 618
|||||||||||| || || ||| | | || | ||| ||||||||||||| ||||
Sbjct 470 TTCCGTTTTGTT-GG-GA-AGGCAG--A-GG--T----TTGCAAGTGATTACAGAAGAGA 517
Query 619 AGTTTCCAGAGT-TCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTGTTAAAGAT 677
|||||||||||| | || | |||||| | |||||||||||||||||||||||| ||||||
Sbjct 518 AGTTTCCAGAGTAT-AACAAATGGGTGAAGAATTTGGAGAAGGTTGAGATTGTAAAAGAT 576
Query 678 TGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGAGAGTGAGA 737
||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||| | |||
Sbjct 577 TGTATTCCACCAAGAGAGAAACATGTTGAACACATGAACTATATGGCAAAGAGAATTAGA 636
Query 738 TCTTCT 743
||||||
Sbjct 637 TCTTCT 642
> Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1
Length=737
Score = 636 bits (344), Expect = 0.0
Identities = 570/677 (84%), Gaps = 24/677 (4%)
Strand=Plus/Plus
Query 81 aaa-gaagaagtgaagCTTTTGGGGATATGGGCGAGCCCTTTTAGCCGTCGGGTCGAGAT 139
||| || |||||||||||||| || | |||||| |||||||| ||||||||| |||||||
Sbjct 36 AAATGAGGAAGTGAAGCTTTTAGGAACATGGGCAAGCCCTTTCAGCCGTCGGATCGAGAT 95
Query 140 GGCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAG-AGATACTGGAGAACAAAA 198
||||||||||||||||||| |||||||||| ||| |||| | |||| ||||| || || |
Sbjct 96 GGCTCTCAAACTCAAAGGCGTACCGTACGAATACTTGGAGGAAGAT-CTGGACAATAAGA 154
Query 199 GCCCTTTGCTTCTTGCTCTTAA-CCCTATTCACAAGAAAG-TCCCTGTTCTTGTCCACAA 256
|| ||||||||||||||| ||| ||||||||||||| ||| ||||||||||||| |||||
Sbjct 155 GCTCTTTGCTTCTTGCTC-TAAGCCCTATTCACAAG-AAGATCCCTGTTCTTGTTCACAA 212
Query 257 TGGTAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACA 316
||||||||||||| ||||||| |||||||| || ||||||||||||||||||||| |||
Sbjct 213 TGGTAAAACCATTATCGAGTCGCATGTGATCCTCGAATACATCGATGAGACTTGGAAACA 272
Query 317 AAATCCAATTCTCCCTCAAGATCCTTAT-GAAAGATCCAAAGCTCGTTTCTTTGCTAAAC 375
||||| ||||| ||||| ||||||| | |||||||||| ||||| |||| || ||||
Sbjct 273 CAATCCCATTCTTCCTCAGGATCCTT-TCCAAAGATCCAAGGCTCGAGTCTTAGCAAAAC 331
Query 376 TCGTCGATGAACAGATTA-TGAACGTGGGGTTTATATCAATGGC-AAGAGCAGACGAGAA 433
|||| |||||||||| || | || || |||||| ||| |||| || | | | |||||
Sbjct 332 TCGTTGATGAACAGA-TAGTAAATGTCGGGTTTGCCTCACTGGCTAA-A--ACA-GAGAA 386
Query 434 AGGAAGAGAAGTTTTAG-CCGAGCAGGTAAGAGAACTGATTATGTA-TCTCGAGAAAGAA 491
||||||||| ||||| | ||||||| ||||||| |||||||| | |||||| ||||||
Sbjct 387 AGGAAGAGAGGTTTT-GATCGAGCAGACAAGAGAATTGATTATG-AGTCTCGAAAAAGAA 444
Query 492 CTTGTCGGAAAAGATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGGA 551
|| | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 445 CTCGCCGGAAAAGATTACTTCGGGGGCAAGACAGTCGGATTCTTGGACTTTGTCGCCGGA 504
Query 552 AGTTTAATTCCGTTTTGTTTGGAGAGAGG-TTGGGAAGGAATAGGATTGGA-AGTGATTA 609
||| | || ||||||||||||||||| || |||||||||||| ||| |||| | ||||||
Sbjct 505 AGTATGATCCCGTTTTGTTTGGAGAG-GGCTTGGGAAGGAATGGGAGTGGAGA-TGATTA 562
Query 610 CAGAGGAGAAGTTTCCAGAGTTCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTG 669
||||| | ||||||||||| | ||| | |||||| | ||| || || |||||||||| |
Sbjct 563 CAGAGAAAAAGTTTCCAGAATACAACAAATGGGTGAAGAAGCTGAAGGAGGTTGAGATCG 622
Query 670 TTAAAGATTGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGA 729
|| |||||| |||| ||||||||| ||||| | |||||||||||| ||||||||||||
Sbjct 623 TTGTTGATTGTATTCCTCCAAGAGAGAAACATATTGAACACATGAACAATATGGCAGAGA 682
Query 730 GAGTGAGATCTTCTTAA 746
| | ||||| |||||
Sbjct 683 AAATCAGATCCGCTTAA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5