BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29460.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933420 jgi|Araly1|933420|scaffold_401408.1 1134 0.0
Ahg481863 jgi|Araly1|481863|fgenesh2_kg.4__923__AT2G29470.1 651 0.0
Ahg481864 jgi|Araly1|481864|fgenesh2_kg.4__924__AT2G29490.1 647 0.0
Ahg320719 jgi|Araly1|320719|fgenesh1_pm.C_scaffold_4000776 577 6e-164
Ahg933422 jgi|Araly1|933422|scaffold_401410.1 427 6e-119
> Ahg933420 jgi|Araly1|933420|scaffold_401408.1
Length=715
Score = 1134 bits (614), Expect = 0.0
Identities = 673/702 (96%), Gaps = 2/702 (0%)
Strand=Plus/Plus
Query 70 AGAGGTCCAATGGCGGAGAAAGAAGAGGATGTGAAGCTTCTAGGTTTTTGGGCAAGCCCT 129
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 12 AGAGGTCCAATGGCGGAGAAAGAAGAGGATGTGAAACTTCTAGGTTTTTGGGCAAGCCCT 71
Query 130 TTTACTCGTAGAGTTGAGATGGCTTTCAAGCTCAAAGGCGTGCCTTACGAGTACTTGGAG 189
|||| ||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 72 TTTAGTCGTAGAGTCGAGATGGCTCTCAAGCTCAAAGGAGTACCTTACGAGTACTTGGAG 131
Query 190 CAAGATATAGTGAACAAGAGCCCTTTGCTTCTCCAGA-TAAATCCGGTTTACAAGAAGGT 248
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 132 CAAGATATAGTGAACAAGAGCCCTTTGCTTCTCCA-ACTAAATCCAGTTTACAAGAAGGT 190
Query 249 TCCGGTTCTTGTCTACAAAGGGAAAATATTATCCGAGTCACATGTGATCCTCGAATACAT 308
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 191 TCCGGTTCTTGTCCACAAAGGTAAAGTATTATCCGAGTCACATGTGATCCTCGAATACAT 250
Query 309 CGACCAAATATGGAAGAACAATCCAATTCTTCCTCAAGATCCTTACGAGAAAGCCATGGC 368
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CGACCAAATATGGAAAAACAATCCAATTCTTCCTCAAGATCCTTACGAGAAAGCCATGGC 310
Query 369 TTTATTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCAGTAGCTTTTATGTCTGTGGC 428
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 311 TTTATTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCAGTAGCCTTTAGGTCTCTGGC 370
Query 429 AAAAGCAGAGAAGGGAGTAGAGGTTGCAATCAAGGAGGCTCAAGAACTCTTTATGTTTCT 488
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAAAGCAGAGAATGGAATAGAGGTTGCAATCAAGGAGGCTCAAGAACTCTTTATGTTTCT 430
Query 489 TGAGAAGGAAGTCACTGGAAAAGATTTCTTCGGTGGCAAAACAATTGGATTTTTGGACTT 548
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 431 TGAGAAGGAAGTCACTGGTAAAGATTTCTTCGGTGGCAAAACAATTGGATTCTTGGACTT 490
Query 549 GGTCGCAGGAAGTATGATCCCGTTTTGTCTTGCTCGAGGTTGGGAAGGTATGGGAATTGA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GGTCGCAGGAAGTATGATCCCGTTTTGTCTTGCTCGAGGTTGGGAAGGTATGGGAATTGA 550
Query 609 TATGATTCCAGAGGAAAAGTTTCCAGAGCTAAACAGATGGATCAAAAATTTGAAAGAAAT 668
||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||
Sbjct 551 TATGATTCCAGAGGAAAAGTTTCCAGAACTAAACCGATGGATCAAGAATTTAAAAGAAAT 610
Query 669 TGAGATCGTGAGAGAATGTATTCCTCCTAGAGAGGAACAAATTGAGCATATGAAGAAAGT 728
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 611 TGAGATCGTGAGGGAATGTATTCCTCCTAGAGAGAAACAAATTGAGCACATGAAGAAAGT 670
Query 729 TGTAGAAAGAATCAAATCAGCCTAAGAGACAACAATGATACT 770
|||||||||||||||||| ||||||||||||||||| |||||
Sbjct 671 TGTAGAAAGAATCAAATCGGCCTAAGAGACAACAATCATACT 712
> Ahg481863 jgi|Araly1|481863|fgenesh2_kg.4__923__AT2G29470.1
Length=790
Score = 651 bits (352), Expect = 0.0
Identities = 610/731 (83%), Gaps = 32/731 (4%)
Strand=Plus/Plus
Query 77 CAATGGCGGAGAAAGAAGAGGATGTGAAGCTTCTAGGTTTTTGGGCAAGCCCTTTTA-CT 135
||||||| ||||||||||||| |||||||||| |||| | |||||||||||| || | |
Sbjct 4 CAATGGCCGAGAAAGAAGAGGGTGTGAAGCTTATAGGGTCTTGGGCAAGCCCATTCAGC- 62
Query 136 CGTAGAGTTGAGATGGCTTTCAAGCTCAAAGGCGTGCCTTACGAGTACTTGGAGC-AAGA 194
|||||||| ||||||||| |||| |||||||||||||| ||||| |||||||| | ||||
Sbjct 63 CGTAGAGTCGAGATGGCTCTCAAACTCAAAGGCGTGCCATACGATTACTTGGA-CGAAGA 121
Query 195 -TA--TAGT-GAACAAGAGCCCTTTGCTTCTCCAGA-TAAATCCGGTTTACAAGAAGGTT 249
|| | || | ||||||||| ||||| || || | | || ||||||||||| || ||
Sbjct 122 TTATTTGGTCG-TCAAGAGCCCGTTGCTACTTCA-ACTCAACCCGGTTTACAAAAAAGTC 179
Query 250 CCGGTTCTT-GTCTACAAAGGGAAAATATTATCCGAGTCACATGTGATCCTCGAATACAT 308
|| ||| || ||| |||| || ||||||||| |||||||||| ||||||| ||||||||
Sbjct 180 CCTGTT-TTGGTCCACAATGGTAAAATATTACCCGAGTCACAACTGATCCTTGAATACAT 238
Query 309 CGACCAAATATGGAAGAACAATCCAATTCTTCCTCAAGATCCTTACGAGAAAGCCATGGC 368
|||||||| ||||| ||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 239 CGACCAAACATGGACGAACAATCCAATTCTACCGCAAGATCCTTACGACAAAGCCATGGC 298
Query 369 TTTATTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCA--G-TAGCTTTTATGTCTGT 425
| ||| |||||||| ||||| |||||||| | | | || | ||| || | |||| |
Sbjct 299 TCGATTTTGGGCCAAATTCGTCGATGAACAAG-T-CA-CATTGATAGGGTTCAGGTCTCT 355
Query 426 GGCAAAAGCAGAGAAGGGAGTAGAGGTTGCAATCAAGGAGGCTCAAGAACTCT-TTATGT 484
| ||| |||||||| || | || ||||||||| |||| | ||||||||| | ||||||
Sbjct 356 AGTGAAATCAGAGAAGAGAATTGATGTTGCAATCGAGGAAGTTCAAGAACT-TATTATGT 414
Query 485 TTCTTGAGAAGGAAGTCACTGG-AAAAGATTTCTTCGGTGGCA-AAACAATTGGATTTTT 542
| |||||||| || |||| || |||| | || |||||||| | | || || ||||| ||
Sbjct 415 TGCTTGAGAATCAAATCAC-GGAAAAAAAATTATTCGGTGG-AGAGACGATAGGATTCTT 472
Query 543 GGACTTGGTCGCAGGAAGTATGATCCCGTTTTGTCTTGCTCGAGGTTGGGAAGGTATGGG 602
|||| |||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 473 GGACATGGTCGTGGGAAGTATGATACCGTTTTGTCTAGCTCGGGGTTGGGAAGGTATGGG 532
Query 603 AATTGATATGATTCCAGAGGAAAAGTTTCCAGAGCTAAACAGATGGATCAAAAATTTGAA 662
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 533 AATTGATATGATTCCAGAGGAAAAGTTTCCAGAACTAAACAGATGGATCAAGAATTTGAA 592
Query 663 AGAAATTGAGATCGTGAGAG-AATGTATTCCTC-CTAGAGAGGAACAAATTGAGCATATG 720
||||||||||||||| | || ||||||||||| | |||||| |||| |||||||| |||
Sbjct 593 AGAAATTGAGATCGTAA-AGGAATGTATTCCTGAC-AGAGAGAAACATATTGAGCACATG 650
Query 721 AAGAAAGTTGTAGAAAGAATCAAATCAGCCTAAGAGACAACAATGATACTCTTCGATC-A 779
| |||| |||||| | |||||||| |||| |||||||||||| |||||||||| |||| |
Sbjct 651 ATGAAAATTGTAGGACGAATCAAAGCAGCTTAAGAGACAACA-TGATACTCTTTGATCCA 709
Query 780 GTAGATGTTAA 790
|| ||||||||
Sbjct 710 GT-GATGTTAA 719
> Ahg481864 jgi|Araly1|481864|fgenesh2_kg.4__924__AT2G29490.1
Length=960
Score = 647 bits (350), Expect = 0.0
Identities = 578/690 (84%), Gaps = 8/690 (1%)
Strand=Plus/Plus
Query 68 AGAGAGGTCCAATGGCGGAGAAAGAAGAGGA-TGTGAAGCTTCTAGGTTTTTGGGCAAGC 126
|||||| || |||| | ||||||||||| || ||||||||||||||| ||||||||||||
Sbjct 89 AGAGAGATCGAATGACTGAGAAAGAAGA-GAGTGTGAAGCTTCTAGGGTTTTGGGCAAGC 147
Query 127 CCTTTTACTCGTAGAGTTGAGATGGCTTTCAAGCTCAAAGGCGTGCCTTACGAGTACTTG 186
||||||| |||| |||| ||||||||| |||| ||||||||||| || ||| | ||||||
Sbjct 148 CCTTTTAGTCGTCGAGTCGAGATGGCTCTCAAACTCAAAGGCGTACCATACAAATACTTG 207
Query 187 GAGCAAGATATAGTGAACAAGAGCCCTTTGCTTCTCCAGATAAATCCGGTTTACAAGAAG 246
||| ||||| || ||||||| |||||||||||| || |||| ||| || |||||||
Sbjct 208 GAGGAAGATTTACCCAACAAGACCCCTTTGCTTCTTGAGCTAAACCCGCTTCACAAGAAA 267
Query 247 GTTCCGGTTCTTGTCTACAAAGGGAAAATATTATCCGAGTCACATGTGATCCTCGAATAC 306
||||||||||||||| |||| | ||||||||| ||||||||||| |||| |||||||||
Sbjct 268 GTTCCGGTTCTTGTCCACAATGATAAAATATTACCCGAGTCACATCTGATTCTCGAATAC 327
Query 307 ATCGACCAAATATGGAAGAACAATCCAATTCTTCCTCAAGATCCTTACGAGAAAGCCATG 366
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 ATCGATCAGACATGGAAGAACAATCCAATTCTTCCTCAAGATCCTTACGAGAAAGCCATG 387
Query 367 GCTTTATTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCAGTAGCTTTTATGTCTGTG 426
||| |||||||||||||||| ||||||| ||| | | || ||| || | ||| ||
Sbjct 388 GCTCGATTCTGGGCCAAGTTCATTGATGAGCAGATCCTAACACTAGGGTTCAGGTCCCTG 447
Query 427 GCAAAAGCAGAGAAGGGA-GTAGAGGTTGCAATC-AAGGAGGCTCAAGAACT-CTTTATG 483
| |||||||||||| ||| | ||||||||| || ||| || ||| ||| | ||| | |
Sbjct 448 GTAAAAGCAGAGAAAGGAAG-AGAGGTTGCTATTGAAG-AGACTCGGGAAATGCTT-ACG 504
Query 484 TTTCTTGAGAAGGAAGTCACTGGAAAAGATTTCTTCGGTGGCAAAACAATTGGATTTTTG 543
||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| |||
Sbjct 505 TTTCTTGAGAAAGAAGTCACTGGAAAAGATTTCTTCGGCGGCAAGACAATCGGATTCTTG 564
Query 544 GACTTGGTCGCAGGAAGTATGATCCCGTTTTGTCTTGCTCGAGGTTGGGAAGGTATGGGA 603
||| || ||||||||||||||||||| |||||||| ||| || |||||||||||| |||
Sbjct 565 GACATGATCGCAGGAAGTATGATCCCATTTTGTCTAGCTAGACTTTGGGAAGGTATAGGA 624
Query 604 ATTGATATGATTCCAGAGGAAAAGTTTCCAGAGCTAAACAGATGGATCAAAAATTTGAAA 663
|||||||||||||||| ||| |||||||| || |||| ||||||||||| |||||| ||
Sbjct 625 ATTGATATGATTCCAGGGGAGAAGTTTCCGGAATTAAATAGATGGATCAAGAATTTGGAA 684
Query 664 GAAATTGAGATCGTGAGAGAATGTATTCCTCCTAGAGAGGAACAAATTGAGCATATGAAG 723
||| ||||| |||||| | ||||||||||| ||||| |||||||||||| ||||
Sbjct 685 GAAGTTGAGGCCGTGAGGGGGTGTATTCCTCCAAGAGATAAACAAATTGAGCGCATGACC 744
Query 724 AAAGTTGTAGAAAGAATCAAATCAGCCTAA 753
||| ||| ||| | || || || ||||||
Sbjct 745 AAAATTGCAGAGACTATTAAGTCTGCCTAA 774
> Ahg320719 jgi|Araly1|320719|fgenesh1_pm.C_scaffold_4000776
Length=687
Score = 577 bits (312), Expect = 6e-164
Identities = 571/693 (82%), Gaps = 30/693 (4%)
Strand=Plus/Plus
Query 84 GGAGAAAGAAGAGGATGTGAAGCTTCTAGGTTTTTGGGCAAGCCCTTTTAC-TCGTAGAG 142
|||||||||||| || |||||||||||||||||||||||||||||||| || | || | |
Sbjct 3 GGAGAAAGAAGAAGAAGTGAAGCTTCTAGGTTTTTGGGCAAGCCCTTTCACAT-GTCGGG 61
Query 143 TTGA-GATGGCTTTCAAGCTCAAAGGCGTGCCTTACGAGTACTTGGA-GCAAGATATAGT 200
| | ||||||| |||| |||||||| || || |||||||||||||| | || || || |
Sbjct 62 TC-ATGATGGCTCTCAAACTCAAAGGTGTACCATACGAGTACTTGGAAGAAA-ATTTAAT 119
Query 201 GAACAAGAGCCCTTTGCTTCTCCAGATAAATCCGGTTTACAAGAAGGTTCCGGTTCTTGT 260
||||||||| ||||||||||| || | || |||||| |||||||||| |||||||||||
Sbjct 120 GAACAAGAGTCCTTTGCTTCTTGAGCTTAACCCGGTTCACAAGAAGGTCCCGGTTCTTGT 179
Query 261 CTACAAAGGGAAAATATTA-TCCGAGTCACATGTGATCCTCGAATACATCGACCAAATAT 319
| |||| || ||| | || || |||||| || |||| ||||||||||||||||||| ||
Sbjct 180 CCACAATGGTAAACCAATACTC-GAGTCAAATCTGATACTCGAATACATCGACCAAACAT 238
Query 320 GGA-AGAACAATCCAATTCTTCCTCAAGATCCTTACGAGAAAGCCATGGCTTTATTCTGG 378
||| | |||||||||||||| ||||||||||| ||||| |||||||||||| |||| |
Sbjct 239 GGACA-AACAATCCAATTCTACCTCAAGATCCGTACGACAAAGCCATGGCTCGGTTCTTG 297
Query 379 GCCAAGTTCGTTGATGAACAGGTTGGACCAGTAGCTTTTATGTCTGTGGCAAAAGCAGAG 438
||||| |||||||||||||| || | ||||| || || | |||| ||| ||||| |||
Sbjct 298 GCCAAATTCGTTGATGAACAAGTCGCACCAGCAGGGTTCAGGTCTTTGGTGAAAGCCGAG 357
Query 439 AAGGGAGTAGAGGTTGCAATC-AAGGAGGCTCAAGAACTCTTTATGTTTCTTGAGAAGGA 497
|| ||||||||||||||||| ||| |||||| |||||| |||||||||||||||||||
Sbjct 358 AAAGGAGTAGAGGTTGCAATTGAAG-AGGCTCGAGAACTAATTATGTTTCTTGAGAAGGA 416
Query 498 AGTCACTGGAAAAGATTTCTTCGGTGGCAAAACAATTGGATTT-TTGGACTTGGTCG-CA 555
|||||| |||||||||||||| || ||||| ||||| || ||| |||||| || | | |
Sbjct 417 AGTCACCGGAAAAGATTTCTTTGGAGGCAAGACAATCGG-TTTCTTGGACATGATTGTC- 474
Query 556 GGAAGTATGATCCCGTTTTGTCTTGCTCGAGGTTGGGAAGGTATGGGAATTGATATGATT 615
||||||||||| ||||||||| | ||||| |||||| |||||| ||||||||||||
Sbjct 475 GGAAGTATGATTCCGTTTTGTGGAGTTCGAGCATGGGAATTTATGGGTATTGATATGATT 534
Query 616 CCAGAGGAAAAGTTTCCAGAGC-T-AAACAGATGGATCAAAAATTTGAAAGAAA-TTGAG 672
|| ||||| |||||||| | || | ||| ||||||||||| || ||||| ||| |||||
Sbjct 535 CCGGAGGAGAAGTTTCC-G-GCATTAAATAGATGGATCAAGAAGTTGAAT-AAAGTTGAG 591
Query 673 ATCGTGAGAGAATGTATTCCTCCTAGAGAGGAACAAATTGAGCA-TATGAA--GAAAGTT 729
|||||||| |||||| | ||||| ||||||||||| ||| |||| | |||| |||| |
Sbjct 592 ATCGTGAGGGAATGTGTACCTCCAAGAGAGGAACATATTAAGCACT-TGAAAAGAAA-T- 648
Query 730 GTAGAAAGAATCAAATCAGCCTA-A-GAGACAA 760
| ||| ||| | ||||| ||||| | |||||||
Sbjct 649 GAAGAGAGAGTTAAATCGGCCTATAAGAGACAA 681
> Ahg933422 jgi|Araly1|933422|scaffold_401410.1
Length=750
Score = 427 bits (231), Expect = 6e-119
Identities = 384/457 (84%), Gaps = 13/457 (3%)
Strand=Plus/Plus
Query 290 ATGTGATCCTCGAATACATCGACCAAA-TATGGAAGAACAATCCAATTCTTCCTCAAGAT 348
||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||
Sbjct 263 ATGTGATCCTCGAATACATCGACCAAACT-TGGAATAACAATCCAATTCTACCTCAAGAT 321
Query 349 CCTTACGAGAAAGCCATGGCTTTATTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCA 408
|| |||||||||||||||||| |||||||||||||||||| ||||||||| | ||||
Sbjct 322 CCCTACGAGAAAGCCATGGCTCGATTCTGGGCCAAGTTCGTCGATGAACAGATCCTACCA 381
Query 409 GTAGCTTTTATGTCTGTGGCAAAAGCAGAGAAGGGAGTAGAGGTTGC-AATCAAGGAGGC 467
|| | || ||| | | | |||||||||||||||| |||| ||||| | | || |||
Sbjct 382 GTTGGGTTCATGCCCCTAGTAAAAGCAGAGAAGGGAATAGATGTTGCTATTGAA-GAGAT 440
Query 468 TCAAGAACT-CTTTATGTTTCTTGAGAAGGAAGTCACTGGAAAAGATTTCTTCGGTGGCA 526
|| |||| | | |||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 441 TCGAGAAATGC-TTATGTTTCTTGAGAAGGAAGTCACTGGAAAAGATTTCTTTGGCAG-A 498
Query 527 AA-ACAATTGGATTTTTGGACTTGGTCGCAGGAAGTAT---GATCCCGTTTTGTCTTGCT 582
|| || || ||||| |||||| |||| ||||||||||| |||||| |||||||| |||
Sbjct 499 AAGACGATCGGATTCTTGGACATGGTTGCAGGAAGTATATTGATCCCATTTTGTCTGGCT 558
Query 583 CGAGG-TTGGGAAGGTATGGGAATTGATATGATTCCAGAGGAAAAGTTTCCAGAGCTAAA 641
|| || ||||||| |||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct 559 CG-GGCTTGGGAATGTATGGGAATTGATATGACTCCAGAGGATACGTTTCCAGAATTAAA 617
Query 642 CAGATGGATCAAAAATTTGAAAGAAATTGAGATCGTGAGAGAATGTATTCCTCCTAGAGA 701
|||||||||||| || ||||| ||| |||||||||| || |||||||| || || | |||
Sbjct 618 CAGATGGATCAAGAAGTTGAATGAAGTTGAGATCGTAAGGGAATGTATACCGCCAAAAGA 677
Query 702 GGAACAAATTGAGCATATGAAGAAAGTTGTAGAAAGA 738
|||| ||||||| |||||| ||| ||||||| |||
Sbjct 678 TAAACATATTGAGCGTATGAACAAAATTGTAGAGAGA 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5