BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29470.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481863 jgi|Araly1|481863|fgenesh2_kg.4__923__AT2G29470.1 1254 0.0
Ahg933420 jgi|Araly1|933420|scaffold_401408.1 630 4e-180
Ahg320719 jgi|Araly1|320719|fgenesh1_pm.C_scaffold_4000776 473 7e-133
> Ahg481863 jgi|Araly1|481863|fgenesh2_kg.4__923__AT2G29470.1
Length=790
Score = 1254 bits (679), Expect = 0.0
Identities = 755/792 (95%), Gaps = 4/792 (1%)
Strand=Plus/Plus
Query 49 ATTCAATGGCCGAGAAAGAAGAGGGTGTGAAGCTTATAGGGTCTTGGGCAAGCCCATTCA 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTCAATGGCCGAGAAAGAAGAGGGTGTGAAGCTTATAGGGTCTTGGGCAAGCCCATTCA 60
Query 109 GTCGTAGAGTCGAGATGGCTCTCAAGCTTAAAGGCGTGCCGTACGATTACTTGGACGAAG 168
| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 61 GCCGTAGAGTCGAGATGGCTCTCAAACTCAAAGGCGTGCCATACGATTACTTGGACGAAG 120
Query 169 ATTATTTGGTTGTCAAGAGCCCGTTGCTACTTCAACTCAACCCGGTTTACAAAAAAGTCC 228
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTATTTGGTCGTCAAGAGCCCGTTGCTACTTCAACTCAACCCGGTTTACAAAAAAGTCC 180
Query 229 CTGTTTTGGTTCACAATGGTAAAATATTACCCGAGTCACAACTGATCCTTGAATACATCG 288
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGTTTTGGTCCACAATGGTAAAATATTACCCGAGTCACAACTGATCCTTGAATACATCG 240
Query 289 ACCAAACATGGACAAACAATCCTATTCTACCGCAA-AGTCCATATGACAAAGCCATGGCT 347
||||||||||||| |||||||| |||||||||||| | ||| || |||||||||||||||
Sbjct 241 ACCAAACATGGACGAACAATCCAATTCTACCGCAAGA-TCCTTACGACAAAGCCATGGCT 299
Query 348 CGATTCTGGGCCAAATTTGTCGATGAACAAGTCACAATGATAGGGCTCAGGTCACTGGTG 407
||||| ||||||||||| |||||||||||||||||| |||||||| ||||||| || |||
Sbjct 300 CGATTTTGGGCCAAATTCGTCGATGAACAAGTCACATTGATAGGGTTCAGGTCTCTAGTG 359
Query 408 AAATCAGAGAAGAGAATTGACGTTGCAATCGAAGAAGTTCAAGAACTAATTATGTTGCTT 467
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 360 AAATCAGAGAAGAGAATTGATGTTGCAATCGAGGAAGTTCAAGAACTTATTATGTTGCTT 419
Query 468 GAGAATCAAATCACGGGaaaaaaaTTATTCGGCGGAGAGACGATAGGATTCTTGGACATG 527
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 GAGAATCAAATCACGGAAAAAAAATTATTCGGTGGAGAGACGATAGGATTCTTGGACATG 479
Query 528 GTCGTGGGAAGTATGATCCCGTTTTGTCTAGCTCGGGCTTGGGAAGGTATGGGAATTGAT 587
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 GTCGTGGGAAGTATGATACCGTTTTGTCTAGCTCGGGGTTGGGAAGGTATGGGAATTGAT 539
Query 588 ATGATTCCAGAAGAAAAGTTTCCAGAGCTAAACAGATGGATCAAGAATTTGAAAGAAATT 647
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 ATGATTCCAGAGGAAAAGTTTCCAGAACTAAACAGATGGATCAAGAATTTGAAAGAAATT 599
Query 648 GAGATCGTGAGGGAATGCATTCCTGATAGAGAGAAACATATTGAGCACATGATGAAAATT 707
|||||||| | |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 GAGATCGTAAAGGAATGTATTCCTGACAGAGAGAAACATATTGAGCACATGATGAAAATT 659
Query 708 GTAGGACGAATCAAAGCGGTCT-AAGAGACAACATGATACTCTTTGATCCAGTGATGTTA 766
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 660 GTAGGACGAATCAAAGCAG-CTTAAGAGACAACATGATACTCTTTGATCCAGTGATGTTA 718
Query 767 AGTTGTTAACTAAATTTGTATTGTCTTGTTATTTAAAAGTTTTATGAACAATCTACTAAA 826
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 AGTTGTTAACTACATTTGTATTGTCTTGTTATTTAAAAGTTTTATGAACAATTTACTAAA 778
Query 827 TAAAGATGAGTG 838
|||||| |||||
Sbjct 779 TAAAGAAGAGTG 790
> Ahg933420 jgi|Araly1|933420|scaffold_401408.1
Length=715
Score = 630 bits (341), Expect = 4e-180
Identities = 593/712 (83%), Gaps = 27/712 (4%)
Strand=Plus/Plus
Query 52 CAATGGCCGAGAAAGAAGAGGGTGTGAAGCTTATAGGGTCTTGGGCAAGCCCATTCAGTC 111
||||||| ||||||||||||| |||||| ||| |||| | |||||||||||| || ||||
Sbjct 19 CAATGGCGGAGAAAGAAGAGGATGTGAAACTTCTAGGTTTTTGGGCAAGCCCTTTTAGTC 78
Query 112 GTAGAGTCGAGATGGCTCTCAAGCTTAAAGGCGTGCCGTACGATTACTTGGACG-AAGAT 170
||||||||||||||||||||||||| ||||| || || ||||| |||||||| | ||||
Sbjct 79 GTAGAGTCGAGATGGCTCTCAAGCTCAAAGGAGTACCTTACGAGTACTTGGA-GCAAGA- 136
Query 171 TATTTGGTTG-TCAAGAGCCCGTTGCTACTTCAACTCAACCCGGTTTACAAAAAAGTCCC 229
|| | | || ||||||||| ||||| || ||||| || || |||||||| || || ||
Sbjct 137 TA--TAG-TGAACAAGAGCCCTTTGCTTCTCCAACTAAATCCAGTTTACAAGAAGGTTCC 193
Query 230 TGTT-TTGGTTCACAATGGTAAAATATTACCCGAGTCACAACTGATCCTTGAATACATCG 288
||| || || ||||| |||||| ||||| |||||||||| ||||||| ||||||||||
Sbjct 194 GGTTCTT-GTCCACAAAGGTAAAGTATTATCCGAGTCACATGTGATCCTCGAATACATCG 252
Query 289 ACCAAACATGGACAAACAATCCTATTCTACCGCAAAG-TCCATATGACAAAGCCATGGCT 347
|||||| ||||| ||||||||| ||||| || | ||| ||| || || ||||||||||||
Sbjct 253 ACCAAATATGGAAAAACAATCCAATTCTTCCTC-AAGATCCTTACGAGAAAGCCATGGCT 311
Query 348 CGATTCTGGGCCAAATTTGTCGATGAACAAG-T-CACAATGATAGGGC-TCAGGTCACTG 404
|||||||||||| || || |||||||| | | || | | || | | | ||||| |||
Sbjct 312 TTATTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCA-G-TA-GCCTTTAGGTCTCTG 368
Query 405 GTGAAATCAGAGAA-GAGAATTGACGTTGCAATCGAA-GAAGTTCAAGAACTAATTATGT 462
| ||| ||||||| | |||| || ||||||||| || || | ||||||||| ||||||
Sbjct 369 GCAAAAGCAGAGAATG-GAATAGAGGTTGCAATC-AAGGAGGCTCAAGAACTCTTTATGT 426
Query 463 TGCTTGAGAATCAAATCACGGGaaaaaaaTTATTCGGCGG-AGAGACGATAGGATTCTTG 521
| |||||||| || |||| || ||| | || ||||| || | | || || |||||||||
Sbjct 427 TTCTTGAGAAGGAAGTCACTGGTAAAGATTTCTTCGGTGGCA-AAACAATTGGATTCTTG 485
Query 522 GACATGGTCGTGGGAAGTATGATCCCGTTTTGTCTAGCTCG-GGCTTGGGAAGGTATGGG 580
||| |||||| ||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 486 GACTTGGTCGCAGGAAGTATGATCCCGTTTTGTCTTGCTCGAGG-TTGGGAAGGTATGGG 544
Query 581 AATTGATATGATTCCAGAAGAAAAGTTTCCAGAGCTAAACAGATGGATCAAGAATTTGAA 640
|||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| ||
Sbjct 545 AATTGATATGATTCCAGAGGAAAAGTTTCCAGAACTAAACCGATGGATCAAGAATTTAAA 604
Query 641 AGAAATTGAGATCGTGAGGGAATGCATTCCTGATAGAGAGAAACATATTGAGCACATGAT 700
|||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 605 AGAAATTGAGATCGTGAGGGAATGTATTCCTCCTAGAGAGAAACAAATTGAGCACATGAA 664
Query 701 GAAAATTGTAGGACGAATCAAAGCGGTCTAAGAGACAACA-TGATACTCTTT 751
|||| |||||| | |||||||| ||| ||||||||||||| | ||||| |||
Sbjct 665 GAAAGTTGTAGAAAGAATCAAATCGGCCTAAGAGACAACAATCATACT-TTT 715
> Ahg320719 jgi|Araly1|320719|fgenesh1_pm.C_scaffold_4000776
Length=687
Score = 473 bits (256), Expect = 7e-133
Identities = 559/701 (80%), Gaps = 38/701 (5%)
Strand=Plus/Plus
Query 60 GAGAAAGAAGAGGGTGTGAAGCTTATAGGGTCTTGGGCAAGCCCATTCA-GTCGTAGAGT 118
||||||||||| | ||||||||| |||| | |||||||||||| |||| | || | ||
Sbjct 4 GAGAAAGAAGAAGAAGTGAAGCTTCTAGGTTTTTGGGCAAGCCCTTTCACAT-GTCGGGT 62
Query 119 CGA-GATGGCTCTCAAGCTTAAAGGCGTGCCGTACGATTACTTGGACGAAGATTATTTGG 177
| | |||||||||||| || ||||| || || ||||| |||||||| ||| | ||||
Sbjct 63 C-ATGATGGCTCTCAAACTCAAAGGTGTACCATACGAGTACTTGGAAGAA-A--ATTT-A 117
Query 178 TTG-TCAAGAGCCCGTTGCTACTTCAACTCAACCCGGTTTACAAAAAAGTCCCTGTT-TT 235
|| |||||| || ||||| ||| | || ||||||||| |||| || ||||| ||| ||
Sbjct 118 ATGAACAAGAGTCCTTTGCTTCTTGAGCTTAACCCGGTTCACAAGAAGGTCCCGGTTCTT 177
Query 236 GGTTCACAATGGTAAAATATTACCCGAGTCACAA-CTGATCCTTGAATACATCGACCAAA 294
|| |||||||||||| | ||| ||||||| || ||||| || ||||||||||||||||
Sbjct 178 -GTCCACAATGGTAAACCAATACTCGAGTCA-AATCTGATACTCGAATACATCGACCAAA 235
Query 295 CATGGACAAACAATCCTATTCTACCGCAA-AGTCCATATGACAAAGCCATGGCTCGATTC 353
|||||||||||||||| |||||||| ||| | ||| || ||||||||||||||||| |||
Sbjct 236 CATGGACAAACAATCCAATTCTACCTCAAGA-TCCGTACGACAAAGCCATGGCTCGGTTC 294
Query 354 TGGGCCAAATTTGTCGATGAACAAGTCACA--ATGATAGGGCTCAGGTCACTGGTGAAAT 411
| ||||||||| || |||||||||||| || | | |||| ||||||| ||||||||
Sbjct 295 TTGGCCAAATTCGTTGATGAACAAGTCGCACCA-GC-AGGGTTCAGGTCTTTGGTGAAAG 352
Query 412 CAGAGAAGAGAATT-GACGTTGCAATCGAAGAAGTTCAAGAACTAATTATGTTGCTTGAG 470
| ||||| || | | || |||||||| ||||| | || ||||||||||||||| ||||||
Sbjct 353 CCGAGAA-AGGAGTAGAGGTTGCAATTGAAGAGGCTCGAGAACTAATTATGTTTCTTGAG 411
Query 471 AATCAAATCACGGGaaaaaaaTTATTCGGCGG-AGAGACGATAGGATTCTTGGACATGGT 529
|| || |||| |||||| | || || || || | |||| || || |||||||||||| |
Sbjct 412 AAGGAAGTCACCGGAAAAGATTTCTTTGGAGGCA-AGACAATCGGTTTCTTGGACATGAT 470
Query 530 CGTGGGAAGTATGATCCCGTTTTGTCTAGCTCGGGCTTGGGAAGGTATGGGAATTGATAT 589
|| ||||||||||| ||||||||| || ||| || |||||| |||||| ||||||||
Sbjct 471 TGTCGGAAGTATGATTCCGTTTTGTGGAGTTCGAGCATGGGAATTTATGGGTATTGATAT 530
Query 590 GATTCCAGAAGAAAAGTTTCCAGAGC-T-AAACAGATGGATCAAGAATTTGAAAGAAA-T 646
|||||| || || |||||||| | || | ||| |||||||||||||| ||||| ||| |
Sbjct 531 GATTCCGGAGGAGAAGTTTCC-G-GCATTAAATAGATGGATCAAGAAGTTGAAT-AAAGT 587
Query 647 TGAGATCGTGAGGGAATGCATTCCTG-ATAGAGAGAAACATATTGAGCACATGATGA-AA 704
|||||||||||||||||| | ||| | |||||| |||||||| ||||| ||| | ||
Sbjct 588 TGAGATCGTGAGGGAATGTGTACCTCCA-AGAGAGGAACATATTAAGCACTTGAAAAGAA 646
Query 705 ATTGTAG-GACGAATCAAAGCGGTCTA-A-GAGACAA-CAT 741
|| | || || || | ||| ||| ||| | ||||||| |||
Sbjct 647 AT-GAAGAGA-GAGTTAAATCGGCCTATAAGAGACAAACAT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5