BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29480.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933422 jgi|Araly1|933422|scaffold_401410.1 933 0.0
Ahg933420 jgi|Araly1|933420|scaffold_401408.1 699 0.0
> Ahg933422 jgi|Araly1|933422|scaffold_401410.1
Length=750
Score = 933 bits (505), Expect = 0.0
Identities = 671/745 (90%), Gaps = 36/745 (5%)
Strand=Plus/Plus
Query 77 agagagagatctaatggcgaagaaagaagagagTGTGAAGCTTCTAGGGTTTTGGATAAG 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 AGAGAGAGATCTAATGGCGAAGAAAGAAGAGAGTGTGAAGCTTCTAGGGTTTTGGATAAG 68
Query 137 CCCTTTTAGTCGTAGAGTCGAGATGGCTCTCAAACTTAAAGGCGTACCATACGAGTACTT 196
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 69 CCCTTTTAGTCGTAGAGTCGAGATGGCTCTCAAAATTAAAGGCGTACCATACGAGTACTT 128
Query 197 GGAAGAAGACTTACCCAAAAAGAGCACTTTACTTCTTGAACTAAATCCGGTTCACAAGAA 256
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 129 GGAAGAAGACTTACCCAAAAAGAGCACTTTACTTCTTGAGCTAAATCCGGTTCACAAGAA 188
Query 257 GGTTCCGGTTCTTGTTCACAATGATAAATTATTATCCGAGTCACATGT-G-AT----C-C 309
||||||||||||||| |||||||| ||| ||||||||||||||||| | | || | |
Sbjct 189 GGTTCCGGTTCTTGTCCACAATGAAAAAATATTATCCGAGTCACATTTAGTATTAAACAC 248
Query 310 -T-C--GAATA-CA-TC-GA-CC---AA-ACTTGGAATAA-C----AATC-CAAT----T 347
| | || || || | || || || || | || || | ||| |||| |
Sbjct 249 CTTCTTGATTAACAATGTGATCCTCGAATACATCGACCAAACTTGGAATAACAATCCAAT 308
Query 348 -CTACCTCACGATCCCTACGAGAAGGCCATGGTTCGGTTCTGGGCCAAGTTCGTTGATGA 406
|||||||| |||||||||||||| ||||||| ||| ||||||||||||||||| |||||
Sbjct 309 TCTACCTCAAGATCCCTACGAGAAAGCCATGGCTCGATTCTGGGCCAAGTTCGTCGATGA 368
Query 407 GCAGATCCTACCAGTTGGCTTCATGCCCCTAGTAAAAGCAGAGAAGGGAATAGATGTTGC 466
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ACAGATCCTACCAGTTGGGTTCATGCCCCTAGTAAAAGCAGAGAAGGGAATAGATGTTGC 428
Query 467 TATTGAGGAGATTCGAGAAATGCTTATGTTTCTTGAGAAGGAAGTCACTGGAAAAGATTT 526
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TATTGAAGAGATTCGAGAAATGCTTATGTTTCTTGAGAAGGAAGTCACTGGAAAAGATTT 488
Query 527 CTTTGGTGGCAAGACGATCGGATTCTTGGACATGGTTGCGGGAAGTAT---GATCCCGTT 583
|||||| | ||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 489 CTTTGGCAGAAAGACGATCGGATTCTTGGACATGGTTGCAGGAAGTATATTGATCCCATT 548
Query 584 TTGTCTTGCTCGGGCTTGGGAATGTTTGGGGATTGATATGACTCCAGAGGATACGTTTCC 643
|||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 549 TTGTCTGGCTCGGGCTTGGGAATGTATGGGAATTGATATGACTCCAGAGGATACGTTTCC 608
Query 644 AGAATTAAACAGATGGATCAAGAACTTGAATGAAGTTGAGATCGTGAGGGAATGTATACC 703
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 609 AGAATTAAACAGATGGATCAAGAAGTTGAATGAAGTTGAGATCGTAAGGGAATGTATACC 668
Query 704 TCCAAAAGAGAAACATATTGAGCGTATGAAGAAAATTATAGAGAGAGCTAAGTCTACGTT 763
|||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 669 GCCAAAAGATAAACATATTGAGCGTATGAACAAAATTGTAGAGAGAGCAAAGTCTAC--- 725
Query 764 CTAAATTAATGATAACTTCATAACT 788
|||||||||||| ||| ||||||||
Sbjct 726 CTAAATTAATGACAACATCATAACT 750
> Ahg933420 jgi|Araly1|933420|scaffold_401408.1
Length=715
Score = 699 bits (378), Expect = 0.0
Identities = 579/676 (86%), Gaps = 14/676 (2%)
Strand=Plus/Plus
Query 81 agagatctaatggcgaagaaagaaga-gagTGTGAAGCTTCTAGGGTTTTGGATAAGCCC 139
|||| || ||||||| |||||||||| || |||||| |||||||| |||||| ||||||
Sbjct 12 AGAGGTCCAATGGCGGAGAAAGAAGAGGA-TGTGAAACTTCTAGGTTTTTGGGCAAGCCC 70
Query 140 TTTTAGTCGTAGAGTCGAGATGGCTCTCAAACTTAAAGGCGTACCATACGAGTACTTGGA 199
|||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 71 TTTTAGTCGTAGAGTCGAGATGGCTCTCAAGCTCAAAGGAGTACCTTACGAGTACTTGG- 129
Query 200 AG-AAGACT-TACCCAAAAAGAGCACTTTACTTCTTGAACTAAATCCGGTTCACAAGAAG 257
|| |||| | || || |||||| |||| ||||| |||||||||| ||| ||||||||
Sbjct 130 AGCAAGA-TATAGTGAACAAGAGCCCTTTGCTTCTCCAACTAAATCCAGTTTACAAGAAG 188
Query 258 GTTCCGGTTCTTGTTCACAATGATAAATTATTATCCGAGTCACATGTGATCCTCGAATAC 317
|||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 189 GTTCCGGTTCTTGTCCACAAAGGTAAAGTATTATCCGAGTCACATGTGATCCTCGAATAC 248
Query 318 ATCGACCAAACT-TGGAATAACAATCCAATTCTACCTCACGATCCCTACGAGAAGGCCAT 376
|||||||||| | ||||| |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 249 ATCGACCAAA-TATGGAAAAACAATCCAATTCTTCCTCAAGATCCTTACGAGAAAGCCAT 307
Query 377 GG-TTCGGTTCTGGGCCAAGTTCGTTGATGAGCAGATCCTACCAGTTGGCTTCATGCCCC 435
|| || ||||||||||||||||||||||| ||| | |||||| | ||| | | | |
Sbjct 308 GGCTTTA-TTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCAGTAGCCTTTAGGTCTC 366
Query 436 TAGTAAAAGCAGAGAAGGGAATAGATGTTGCTATTGAGGAGATTCGAGAAATGCTT-ATG 494
| | |||||||||||| |||||||| ||||| || ||||| || |||| | ||| |||
Sbjct 367 TGGCAAAAGCAGAGAATGGAATAGAGGTTGCAATCAAGGAGGCTCAAGAACT-CTTTATG 425
Query 495 TTTCTTGAGAAGGAAGTCACTGGAAAAGATTTCTTTGGTGGCAAGACGATCGGATTCTTG 554
||||||||||||||||||||||| ||||||||||| |||||||| || || |||||||||
Sbjct 426 TTTCTTGAGAAGGAAGTCACTGGTAAAGATTTCTTCGGTGGCAAAACAATTGGATTCTTG 485
Query 555 GACATGGTTGCGGGAAGTATGATCCCGTTTTGTCTTGCTCG-GGCTTGGGAATGTTTGGG 613
||| |||| || ||||||||||||||||||||||||||||| || ||||||| || ||||
Sbjct 486 GACTTGGTCGCAGGAAGTATGATCCCGTTTTGTCTTGCTCGAGG-TTGGGAAGGTATGGG 544
Query 614 GATTGATATGACTCCAGAGGATACGTTTCCAGAATTAAACAGATGGATCAAGAACTTGAA 673
|||||||||| ||||||||| | |||||||||| ||||| ||||||||||||| || ||
Sbjct 545 AATTGATATGATTCCAGAGGAAAAGTTTCCAGAACTAAACCGATGGATCAAGAATTTAAA 604
Query 674 TGAAGTTGAGATCGTGAGGGAATGTATACCTCCAAAAGAGAAACATATTGAGCGTATGAA 733
||| |||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||
Sbjct 605 AGAAATTGAGATCGTGAGGGAATGTATTCCTCCTAGAGAGAAACAAATTGAGCACATGAA 664
Query 734 GAAAATTATAGAGAGA 749
|||| || |||| |||
Sbjct 665 GAAAGTTGTAGAAAGA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5