BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29490.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481864 jgi|Araly1|481864|fgenesh2_kg.4__924__AT2G29490.1 1386 0.0
Ahg933420 jgi|Araly1|933420|scaffold_401408.1 671 0.0
Ahg481863 jgi|Araly1|481863|fgenesh2_kg.4__923__AT2G29470.1 545 2e-154
Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1 398 5e-110
Ahg933422 jgi|Araly1|933422|scaffold_401410.1 289 3e-77
> Ahg481864 jgi|Araly1|481864|fgenesh2_kg.4__924__AT2G29490.1
Length=960
Score = 1386 bits (750), Expect = 0.0
Identities = 895/965 (93%), Gaps = 9/965 (1%)
Strand=Plus/Plus
Query 14 ATATAGTAAACTCAAGTAATCAAGCAAGTAAACGAAACATAAAAAAGAAAAGTAGTGCAA 73
|||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1 ATATAGTAAACTAAAGTAATCAATCAAGTAAACGAAACA-CAAAGAGAAAAGTAGTGCAA 59
Query 74 GAAACAGAGGAGTTAGATACCAAAAAGTGAGAGATATCGAATGGCGGAGAAAGAAGAGAG 133
||||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||
Sbjct 60 GAAACAGAGGAGTTAGATACCAAAAAGCGAGAGAGATCGAATGACTGAGAAAGAAGAGAG 119
Query 134 TGTGAAGCTTCTAGGGTTTTGGGCAAGCCCTTTTAGTCGTCGAGTCGAGATGGCTCTCAA 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTGAAGCTTCTAGGGTTTTGGGCAAGCCCTTTTAGTCGTCGAGTCGAGATGGCTCTCAA 179
Query 194 ACTCAAAGGCGTGCCATACGAATACTTGGAAGAAGATTTGCCCAACAAGACCCCTTTGCT 253
|||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 180 ACTCAAAGGCGTACCATACAAATACTTGGAGGAAGATTTACCCAACAAGACCCCTTTGCT 239
Query 254 TCTGGAGCTAAACCCGCTTCACAAGAAAGTTCCGGTTCTTGTCCACAATGACAAAATATT 313
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TCTTGAGCTAAACCCGCTTCACAAGAAAGTTCCGGTTCTTGTCCACAATGATAAAATATT 299
Query 314 ACTCGAGTCACATCTGATTCTCGAATACATCGATCAGACGTGGAAGAACAGTCCAATTCT 373
|| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 300 ACCCGAGTCACATCTGATTCTCGAATACATCGATCAGACATGGAAGAACAATCCAATTCT 359
Query 374 TCCTCAAGATCCTTACGAGAAGGCCATGGCTCGATTTTGGGCCAAGTTCATCGATGACCA 433
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 360 TCCTCAAGATCCTTACGAGAAAGCCATGGCTCGATTCTGGGCCAAGTTCATTGATGAGCA 419
Query 434 GATCCTAACACTAGGGTTTAGGTCCCTTGTAAAAGCAGAGAAAGGAAGAGAGGTTGCTAT 493
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 GATCCTAACACTAGGGTTCAGGTCCCTGGTAAAAGCAGAGAAAGGAAGAGAGGTTGCTAT 479
Query 494 TGAAGAGACTCGGGAACTGCTTATGTTTCTTGAGAAAGAAGTCACTGGAAAAGATTTCTT 553
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 TGAAGAGACTCGGGAAATGCTTACGTTTCTTGAGAAAGAAGTCACTGGAAAAGATTTCTT 539
Query 554 CGGTGGCAAGACAATCGGATTCTTGGACATGATCGCAGGAAGTATGATCCCATTTTGTCT 613
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGGCGGCAAGACAATCGGATTCTTGGACATGATCGCAGGAAGTATGATCCCATTTTGTCT 599
Query 614 AGCTAGACTTTGGAAAGGTATTGGAATTGATATGATTCCAGAGGAGAAGTTTCCGGAATT 673
||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 600 AGCTAGACTTTGGGAAGGTATAGGAATTGATATGATTCCAGGGGAGAAGTTTCCGGAATT 659
Query 674 AAATAGATGGATCAAGAATTTGGAAGAAGTTGAGGCAGTGAGGGGATGTATTCCTCCAAG 733
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 660 AAATAGATGGATCAAGAATTTGGAAGAAGTTGAGGCCGTGAGGGGGTGTATTCCTCCAAG 719
Query 734 AGAGAAACAAATTGAGCGCATGACCAAAATTGCAGAGACAATTAAGTCTGCCTAAATTAA 793
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 AGATAAACAAATTGAGCGCATGACCAAAATTGCAGAGACTATTAAGTCTGCCTAAATTAA 779
Query 794 AGATACTTCTTGCCTACGAAAATATTTGATTTATATGCTTGCATCGttttttatttatat 853
||||| ||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 AGATATTTCTTGCCTCCGGAAATATTTGATTTATATGCTTGCATCGTTTTATATTTATAT 839
Query 854 ttttattttttaaagtttttCGAAA-AATAGAATGACCTAA-TATTTA-AGTAAAAAGAT 910
||||||||||| || || || ||| | | || |||||| | || ||| |
Sbjct 840 CTTTATTTTTTA--GTATTAATAATTAATTTTTTAATAAAAATATTTAGAATAGAAACAA 897
Query 911 CA-AAAACCTATTTGAAAGTTACAGCAATCAAATAACGTGGTGTGTCTGGAGATTGTAAA 969
| |||| || || |||||||| ||||||||||||| ||| |||||||||||||| ||||
Sbjct 898 AAGAAAATCT-TT-GAAAGTTATAGCAATCAAATAAAGTGCTGTGTCTGGAGATTATAAA 955
Query 970 AGCCA 974
|||||
Sbjct 956 AGCCA 960
> Ahg933420 jgi|Araly1|933420|scaffold_401408.1
Length=715
Score = 671 bits (363), Expect = 0.0
Identities = 592/702 (84%), Gaps = 18/702 (3%)
Strand=Plus/Plus
Query 95 AAAAAGTGAGAGATATCGAATGGCGGAGAAAGAAGA-GAGTGTGAAGCTTCTAGGGTTTT 153
||||||| |||| || |||||||||||||||||| || |||||| |||||||| ||||
Sbjct 4 AAAAAGTTAGAG--GTCCAATGGCGGAGAAAGAAGAGGA-TGTGAAACTTCTAGGTTTTT 60
Query 154 GGGCAAGCCCTTTTAGTCGTCGAGTCGAGATGGCTCTCAAACTCAAAGGCGTGCCATACG 213
|||||||||||||||||||| ||||||||||||||||||| |||||||| || || ||||
Sbjct 61 GGGCAAGCCCTTTTAGTCGTAGAGTCGAGATGGCTCTCAAGCTCAAAGGAGTACCTTACG 120
Query 214 AATACTTGGAAG-AAGAT-TTGCCCAACAAGACCCCTTTGCTTCTGGAGCTAAA-CCCGC 270
| ||||||| || ||||| | | ||||||| |||||||||||| | ||||| || |
Sbjct 121 AGTACTTGG-AGCAAGATATAG-TGAACAAGAGCCCTTTGCTTCTCCAACTAAATCCAG- 177
Query 271 TTCACAAGAAAGTTCCGGTTCTTGTCCACAATGACAAAATATTACT-CGAGTCACATCTG 329
|| ||||||| |||||||||||||||||||| | ||| ||||| | |||||||||| ||
Sbjct 178 TTTACAAGAAGGTTCCGGTTCTTGTCCACAAAGGTAAAGTATTA-TCCGAGTCACATGTG 236
Query 330 ATTCTCGAATACATCGATCAGACGTGGAAGAACAGTCCAATTCTTCCTCAAGATCCTTAC 389
|| |||||||||||||| || | ||||| |||| |||||||||||||||||||||||||
Sbjct 237 ATCCTCGAATACATCGACCAAATATGGAAAAACAATCCAATTCTTCCTCAAGATCCTTAC 296
Query 390 GAGAAGGCCATGGCTCGATTTTGGGCCAAGTTCATCGATGACCAGATCCTAACACTAGGG 449
||||| ||||||||| ||| |||||||||||| | ||||| ||| | | || |||
Sbjct 297 GAGAAAGCCATGGCTTTATTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCAGTAGCC 356
Query 450 TTTAGGTCCCTTGTAAAAGCAGAGAAAGGAAGAGAGGTTGCTATTGAAG-AGACTCGGGA 508
|||||||| || | |||||||||||| |||| ||||||||| || ||| || ||| ||
Sbjct 357 TTTAGGTCTCTGGCAAAAGCAGAGAATGGAATAGAGGTTGCAATC-AAGGAGGCTCAAGA 415
Query 509 ACTGCTT-ATGTTTCTTGAGAAAGAAGTCACTGGAAAAGATTTCTTCGGTGGCAAGACAA 567
||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 416 ACT-CTTTATGTTTCTTGAGAAGGAAGTCACTGGTAAAGATTTCTTCGGTGGCAAAACAA 474
Query 568 TCGGATTCTTGGACATGATCGCAGGAAGTATGATCCCATTTTGTCTAGCTAGACTTTGGA 627
| |||||||||||| || ||||||||||||||||||| |||||||| ||| || ||||
Sbjct 475 TTGGATTCTTGGACTTGGTCGCAGGAAGTATGATCCCGTTTTGTCTTGCTCGAGGTTGGG 534
Query 628 AAGGTATTGGAATTGATATGATTCCAGAGGAGAAGTTTCCGGAATTAAATAGATGGATCA 687
||||||| ||||||||||||||||||||||| |||||||| ||| |||| |||||||||
Sbjct 535 AAGGTATGGGAATTGATATGATTCCAGAGGAAAAGTTTCCAGAACTAAACCGATGGATCA 594
Query 688 AGAATTTGGAAGAAGTTGAGG-CAGTGAGGGGATGTATTCCTCCAAGAGAGAAACAAATT 746
||||||| ||||| ||||| | ||||||| |||||||||||| |||||||||||||||
Sbjct 595 AGAATTTAAAAGAAATTGAGATC-GTGAGGGAATGTATTCCTCCTAGAGAGAAACAAATT 653
Query 747 GAGCGCATGACCAAAATTGCAGAGACAATTAAGTCTGCCTAA 788
|||| ||||| ||| ||| ||| | ||| || || ||||||
Sbjct 654 GAGCACATGAAGAAAGTTGTAGAAAGAATCAAATCGGCCTAA 695
> Ahg481863 jgi|Araly1|481863|fgenesh2_kg.4__923__AT2G29470.1
Length=790
Score = 545 bits (295), Expect = 2e-154
Identities = 554/677 (82%), Gaps = 25/677 (4%)
Strand=Plus/Plus
Query 113 AATGGCGGAGAAAGAAGAGAGTGTGAAGCTTCTAGGGTTTTGGGCAAGCCCTTTTAGTCG 172
|||||| |||||||||||| ||||||||||| |||||| |||||||||||| || || ||
Sbjct 5 AATGGCCGAGAAAGAAGAGGGTGTGAAGCTTATAGGGTCTTGGGCAAGCCCATTCAGCCG 64
Query 173 TCGAGTCGAGATGGCTCTCAAACTCAAAGGCGTGCCATACGAATACTTGGAAGAAGATT- 231
| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 65 TAGAGTCGAGATGGCTCTCAAACTCAAAGGCGTGCCATACGATTACTTGGACGAAGATTA 124
Query 232 T--GCCCAACAAGACCCCTTTGCTTCTGGAGCTAAACCCGCTTCACAAGAAAGTTCCGGT 289
| | | ||||| ||| ||||| || | || |||||| || |||| ||||| || ||
Sbjct 125 TTTGGTCGTCAAGAGCCCGTTGCTACTTCAACTCAACCCGGTTTACAAAAAAGTCCCTGT 184
Query 290 TCTTG-TCCACAATGACAAAATATTACTCGAGTCACATCTGATTCTCGAATACATCGATC 348
| ||| ||||||||| |||||||||| ||||||||| ||||| || ||||||||||| |
Sbjct 185 T-TTGGTCCACAATGGTAAAATATTACCCGAGTCACAACTGATCCTTGAATACATCGACC 243
Query 349 AGACGTGGAAGAACAGTCCAATTCTTCCTCAAGATCCTTACGAGAAGGCCATGGCTCGAT 408
| || |||| ||||| ||||||||| || |||||||||||||| || |||||||||||||
Sbjct 244 AAACATGGACGAACAATCCAATTCTACCGCAAGATCCTTACGACAAAGCCATGGCTCGAT 303
Query 409 TTTGGGCCAAGTTCATCGATGACCA-GATC-C-TAACACTAGGGTTTAGGTCCCTTGTAA 465
|||||||||| ||| ||||||| || | || | | | ||||||| ||||| || || |
Sbjct 304 TTTGGGCCAAATTCGTCGATGAACAAG-TCACATTG-A-TAGGGTTCAGGTCTCTAGTGA 360
Query 466 AAGCAGAGAA-AGGAAGAGAGGTTGCTATTGAAGAGACT-CGGGAACTGCTTATGTTTCT 523
|| ||||||| || || || ||||| || || || | | | ||||| ||||||| ||
Sbjct 361 AATCAGAGAAGAG-AATTGATGTTGCAATCGAGGA-AGTTCAAGAACTTATTATGTTGCT 418
Query 524 TGAGAAAGAAGTCACTGGAAAAGAT-TTCTTCGGTGGCA-AGACAATCGGATTCTTGGAC 581
|||||| || |||| |||||| | || |||||||| | |||| || ||||||||||||
Sbjct 419 TGAGAATCAAATCAC-GGAAAAAAAATTATTCGGTGG-AGAGACGATAGGATTCTTGGAC 476
Query 582 ATGATCGCAGGAAGTATGATCCCATTTTGTCTAGCTAGACTTTGGAAAGGTATTGGAATT 641
||| ||| ||||||||||| || |||||||||||| | |||| ||||||| ||||||
Sbjct 477 ATGGTCGTGGGAAGTATGATACCGTTTTGTCTAGCTCGGGGTTGGGAAGGTATGGGAATT 536
Query 642 GATATGATTCCAGAGGAGAAGTTTCCGGAATTAAATAGATGGATCAAGAATTTGGAAGAA 701
||||||||||||||||| |||||||| ||| |||| |||||||||||||||||| |||||
Sbjct 537 GATATGATTCCAGAGGAAAAGTTTCCAGAACTAAACAGATGGATCAAGAATTTGAAAGAA 596
Query 702 GTTGAGG-CAGTGAGGGGATGTATTCCTC-CAAGAGAGAAACAAATTGAGCGCATGACCA 759
||||| | || | || |||||||||| || |||||||||| ||||||| ||||| |
Sbjct 597 ATTGAGATC-GTAAAGGAATGTATTCCTGACA-GAGAGAAACATATTGAGCACATGATGA 654
Query 760 AAATTGCAGAGAC-AAT 775
|||||| || ||| |||
Sbjct 655 AAATTGTAG-GACGAAT 670
> Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1
Length=737
Score = 398 bits (215), Expect = 5e-110
Identities = 516/658 (78%), Gaps = 34/658 (5%)
Strand=Plus/Plus
Query 135 GTGAAGCTTCTAGGGTTTTGGGCAAGCCCTTTTAGTCGTC-GAGTCGAGATGGCTCTCAA 193
||||||||| |||| |||||||||||||| || |||| || ||||||||||||||||
Sbjct 46 GTGAAGCTTTTAGGAACATGGGCAAGCCCTTTCAGCCGTCGGA-TCGAGATGGCTCTCAA 104
Query 194 ACTCAAAGGCGTGCCATACGAATACTTGGAAGAAGATTTGCCCAACAAGACCCCTTTGCT 253
|||||||||||| || |||||||||||||| |||||| || ||| |||| | |||||||
Sbjct 105 ACTCAAAGGCGTACCGTACGAATACTTGGAGGAAGATCTGGACAATAAGAGCTCTTTGCT 164
Query 254 TCTGGAGCTAAACCCGCTTCACAAGAAAGTTCCG-GTTCTTGTCCACAATGACAAAAT-A 311
||| | |||| ||| |||||||||| | ||| |||||||| ||||||| |||| |
Sbjct 165 TCTTGCTCTAAGCCCTATTCACAAGAA-GATCCCTGTTCTTGTTCACAATGGTAAAACCA 223
Query 312 TTACTCGAGTCACATCTGATTCTCGAATACATCGATCAGACGTGGAAGA-ACAGTCCAAT 370
||| ||||||| ||| |||| ||||||||||||||| |||| ||||| | ||| ||| ||
Sbjct 224 TTA-TCGAGTCGCATGTGATCCTCGAATACATCGATGAGACTTGGAA-ACACAATCCCAT 281
Query 371 TCTTCCTCAAGATCCTTACGAGAAGG-CCATGGCTCGATT-TTGGGCCAAGTTCATCGAT 428
||||||||| ||||||| | | ||| ||| ||||||| | || | | || || | |||
Sbjct 282 TCTTCCTCAGGATCCTTTCCA-AAGATCCAAGGCTCGAGTCTTAG-CAAAACTCGTTGAT 339
Query 429 GACCAGATCCTAACAC-TAGGGTTTAGG-TCCCTTG-TAAAAGCAGAGAAAGGAAGAGAG 485
|| ||||| ||| | | |||||| | || || | ||||| |||||||||||||||||
Sbjct 340 GAACAGATAGTAA-ATGTCGGGTTT-GCCTCACTGGCTAAAA-CAGAGAAAGGAAGAGAG 396
Query 486 GTTGCT-ATTGAAG-AGACTCGGGAACTGCTTATGTTTCTTGAGAAAGAAGTCACTGGAA 543
||| | || || | |||| | ||| || ||||| ||| || |||||| || | ||||
Sbjct 397 GTTT-TGATCGA-GCAGACAAGAGAATTGATTATGAGTCTCGAAAAAGAACTCGCCGGAA 454
Query 544 AAGATTTCTTCGGTGGCAAGACAATCGGATTCTTGGACAT-GATCGCAGGAAGTATGATC 602
|||||| |||||| ||||||||| |||||||||||||| | | |||| ||||||||||||
Sbjct 455 AAGATTACTTCGGGGGCAAGACAGTCGGATTCTTGGACTTTG-TCGCCGGAAGTATGATC 513
Query 603 CCATTTTGTCTAGCTAGA-CTTTGGAAAGGTATTGGAATTGATATGATTCCAGAGGAGAA 661
|| |||||| | | || ||| |||| || || ||| | || |||||| ||||| | ||
Sbjct 514 CCGTTTTGTTTGGAGAGGGCTTGGGAA-GGAATGGGAGTGGAGATGATTACAGAGAAAAA 572
Query 662 GTTTCCGGAATTA-AATAGATGGATCAAGAATTTGGAAGAAG-TTGAGG-CAGTGAGGGG 718
|||||| |||| | || | |||| | ||||| || ||| || ||||| | || | |
Sbjct 573 GTTTCCAGAAT-ACAACAAATGGGTGAAGAAGCTG-AAGGAGGTTGAGATC-GTT-GTTG 628
Query 719 AT-GTATTCCTCCAAGAGAGAAACAAATTGAGCGCATGACCAAAATTGCAGAGACAAT 775
|| |||||||||||||||||||||| ||||| | ||||| ||| || ||||||| |||
Sbjct 629 ATTGTATTCCTCCAAGAGAGAAACATATTGAACACATGAACAATATGGCAGAGAAAAT 686
> Ahg933422 jgi|Araly1|933422|scaffold_401410.1
Length=750
Score = 289 bits (156), Expect = 3e-77
Identities = 203/226 (90%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 102 GAGAGATATCGAATGGCGGAGAAAGAAGAGAGTGTGAAGCTTCTAGGGTTTTGGGCAAGC 161
|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 10 GAGAGAGATCTAATGGCGAAGAAAGAAGAGAGTGTGAAGCTTCTAGGGTTTTGGATAAGC 69
Query 162 CCTTTTAGTCGTCGAGTCGAGATGGCTCTCAAACTCAAAGGCGTGCCATACGAATACTTG 221
|||||||||||| |||||||||||||||||||| | |||||||| |||||||| ||||||
Sbjct 70 CCTTTTAGTCGTAGAGTCGAGATGGCTCTCAAAATTAAAGGCGTACCATACGAGTACTTG 129
Query 222 GAAGAAGATTTGCCCAACAAGACCCCTTTGCTTCTGGAGCTAAACCCGCTTCACAAGAAA 281
|||||||| || ||||| |||| | |||| ||||| |||||||| ||| ||||||||||
Sbjct 130 GAAGAAGACTTACCCAAAAAGAGCACTTTACTTCTTGAGCTAAATCCGGTTCACAAGAAG 189
Query 282 GTTCCGGTTCTTGTCCACAATGACAAAATATTACTC-GAGTCACAT 326
||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 190 GTTCCGGTTCTTGTCCACAATGAAAAAATATTA-TCCGAGTCACAT 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5